genome.fa.s8.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  135  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48292468--48292523	27	2.1	27	96	0	103	48	3	25	23	1.67
48296711--48296800	39	2.2	41	84	3	112	38	5	5	50	1.49
48298811--48298843	16	2.1	16	88	11	50	45	3	6	45	1.43
48299200--48299229	11	2.7	11	100	0	60	26	20	0	53	1.46
48312671--48312704	16	2.1	16	88	0	50	35	20	2	41	1.68
48318466--48318513	20	2.5	20	83	6	64	68	0	4	27	1.07
48321117--48321170	28	2.0	26	82	7	63	46	1	5	46	1.37
48322060--48322389	95	3.5	95	97	1	619	40	4	14	40	1.66
48322409--48322698	126	2.3	125	90	0	454	33	18	21	27	1.96
48323313--48323526	59	3.7	59	73	16	205	47	7	5	40	1.53
48323918--48323960	18	2.4	18	88	0	59	44	9	27	18	1.80
48324022--48324081	30	2.0	30	86	0	84	5	16	45	33	1.69
48325762--48325834	11	6.6	11	78	6	85	49	0	28	21	1.50
48325762--48325834	23	3.3	21	87	9	101	49	0	28	21	1.50
48326596--48326638	20	2.3	18	84	8	50	2	30	4	62	1.28
48345931--48345999	3	23.0	3	100	0	138	66	0	0	33	0.92
48351383--48351460	38	2.1	38	97	0	147	48	10	17	23	1.78
48352607--48352697	43	2.1	43	87	2	130	42	12	12	32	1.79
48355277--48355323	24	1.9	23	83	12	58	34	12	10	42	1.78
48358984--48359167	41	4.5	41	80	6	194	34	30	17	17	1.93
48358984--48359167	82	2.2	82	84	3	228	34	30	17	17	1.93
48365583--48365613	16	1.9	16	93	0	53	61	32	6	0	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48366469--48366511	21	2.0	21	82	8	52	41	4	2	51	1.35
48379722--48379764	11	3.7	11	76	11	50	65	0	2	32	1.06
48387785--48387839	21	2.7	20	80	5	65	67	3	27	1	1.17
48388600--48388708	37	2.8	40	78	17	138	22	15	25	35	1.94
48403440--48403480	22	1.9	21	85	14	57	24	4	4	65	1.32
48405136--48405193	19	3.2	18	81	13	66	27	1	1	68	1.08
48405136--48405225	19	5.3	18	69	24	61	32	1	1	65	1.07
48405190--48405257	22	3.0	22	76	18	77	42	0	0	57	0.98
48407663--48407775	25	4.5	25	82	8	140	29	23	23	23	1.99
48407663--48407776	50	2.3	50	87	3	158	28	22	24	23	1.99
48415025--48415115	25	3.6	25	80	5	112	27	20	26	25	1.99
48431724--48431763	21	1.9	21	89	0	62	47	5	10	37	1.59
48434157--48434852	344	2.0	344	96	0	1284	32	15	20	30	1.94
48447448--48447850	164	2.5	164	95	0	716	34	22	18	24	1.96
48454381--48454443	27	2.4	26	80	12	67	61	3	3	31	1.27
48459509--48459552	6	7.2	6	94	5	79	15	15	15	52	1.75
48467903--48468150	123	2.0	124	98	0	480	33	8	18	38	1.82
48473073--48473158	31	2.7	31	84	8	95	18	32	37	11	1.87
48473098--48473150	18	3.2	17	70	25	51	13	33	41	11	1.80
48473098--48473174	31	2.5	31	87	4	111	16	32	37	12	1.87
48474724--48474796	37	2.0	37	89	5	112	30	8	26	35	1.85
48476460--48476512	19	2.7	19	83	11	63	50	3	0	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476471--48476515	20	2.2	20	84	7	56	53	4	0	42	1.21
48478776--48478830	16	3.8	15	77	11	53	41	3	3	50	1.37
48479132--48479169	14	2.7	15	88	12	62	26	0	31	42	1.56
48479460--48479486	14	1.9	14	100	0	54	33	0	29	37	1.58
48479523--48479580	22	2.6	23	76	15	61	25	1	36	36	1.67
48479799--48479903	47	2.1	49	86	13	146	47	8	0	42	1.40
48480444--48480485	21	2.0	22	85	4	59	64	4	2	28	1.26
48480302--48480610	153	2.0	153	90	6	484	55	6	8	30	1.54
48480552--48480653	50	2.1	50	82	14	124	45	8	1	44	1.46
48481198--48481248	16	3.2	16	74	0	57	11	43	21	23	1.85
48481748--48481777	14	2.1	14	100	0	60	26	13	6	53	1.64
48481993--48482036	22	2.0	22	95	0	79	31	13	15	38	1.87
48482586--48482633	12	4.3	12	71	28	52	52	14	0	33	1.42
48482581--48482637	20	2.9	20	87	12	75	49	14	0	36	1.43
48482543--48482731	54	3.5	54	74	15	151	48	14	3	33	1.60
48482656--48482853	9	23.7	9	66	20	99	44	22	2	30	1.66
48482656--48482794	63	2.4	56	79	17	158	46	20	3	29	1.68
48482674--48482808	63	2.2	63	90	4	193	46	22	2	28	1.66
48482685--48482831	25	6.0	25	68	19	78	44	22	2	30	1.67
48482768--48482849	41	2.0	41	90	0	128	45	21	0	32	1.53
48482799--48482876	25	3.3	25	80	8	92	44	19	0	35	1.51
48482662--48482824	16	9.9	16	72	13	125	46	22	2	29	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48484616--48484673	21	2.8	21	100	0	116	39	20	34	5	1.75
48485013--48485148	43	3.2	42	85	5	166	25	22	28	24	1.99
48486389--48486436	24	2.0	24	88	8	71	64	2	0	33	1.05
48487551--48487603	21	2.5	22	81	6	63	45	0	1	52	1.11
48487525--48487590	29	2.4	27	82	10	71	42	0	1	56	1.08
48487568--48487610	21	2.0	22	95	4	79	44	0	0	55	0.99
48487455--48487770	157	2.0	158	99	0	625	39	6	8	46	1.58
48487708--48487760	21	2.5	22	81	6	63	45	0	1	52	1.11
48487682--48487747	29	2.4	27	82	10	71	42	0	1	56	1.08
48487725--48487767	21	2.0	22	95	4	79	44	0	0	55	0.99
48487690--48487775	29	2.9	29	79	8	84	43	0	1	55	1.07
48494157--48494219	31	2.0	32	81	3	74	17	14	9	58	1.61
48494925--48494968	22	2.0	22	86	0	61	38	2	2	56	1.24
48510912--48510975	22	2.9	22	97	2	119	15	17	25	42	1.88
48510912--48510970	10	5.4	10	81	18	73	16	18	22	42	1.89
48516704--48516737	17	1.9	17	88	5	50	82	2	5	8	0.93
48524321--48524440	43	2.8	43	97	0	222	28	19	26	25	1.99
48531298--48531464	45	3.7	45	75	7	153	42	12	19	25	1.86
48531549--48531629	27	3.0	27	76	3	83	40	14	23	20	1.90
48560523--48560574	24	2.1	25	86	10	72	44	1	42	11	1.51
48564992--48565030	19	2.1	19	100	0	78	38	15	25	20	1.92
48566633--48566693	30	2.0	31	87	3	88	40	6	26	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48571231--48571302	15	4.8	15	73	11	58	45	6	19	27	1.76
48571223--48571306	30	2.8	30	92	0	132	45	5	21	27	1.75
48571462--48571488	2	13.5	2	100	0	54	0	48	0	51	1.00
48573874--48574212	170	2.0	169	99	0	669	42	18	11	26	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135

The End!