genome.fa.s8.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  125  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45140422--45140446	11	2.3	11	100	0	50	68	8	0	24	1.16
45146343--45146369	4	6.8	4	100	0	54	74	0	0	25	0.83
45150681--45150711	3	10.3	3	100	0	62	64	0	35	0	0.94
45154224--45154358	69	2.0	69	85	2	182	32	13	24	29	1.93
45154496--45154587	25	3.7	25	77	0	76	23	21	20	33	1.97
45171358--45171396	19	2.1	19	85	9	53	41	5	5	48	1.47
45186391--45186434	21	2.1	21	95	0	79	40	11	9	38	1.73
45190746--45190813	26	2.6	26	78	0	73	36	11	7	44	1.69
45190748--45190813	13	5.1	13	78	7	62	36	10	7	45	1.67
45195451--45195514	9	7.1	9	87	0	92	40	23	12	23	1.88
45195538--45195595	20	3.0	20	75	10	57	24	1	8	65	1.30
45205888--45205923	16	2.2	16	100	0	72	38	36	0	25	1.56
45206831--45206864	11	3.1	11	100	0	68	55	0	0	44	0.99
45210369--45210394	2	13.0	2	100	0	52	50	0	50	0	1.00
45218211--45218427	108	2.0	109	99	0	427	31	12	12	42	1.81
45221376--45221416	21	2.0	21	85	0	55	19	26	34	19	1.96
45221515--45221581	21	3.2	21	87	4	100	26	32	19	20	1.97
45222873--45222942	24	2.8	25	74	26	76	42	0	7	50	1.30
45223972--45224800	126	6.6	126	99	0	1622	40	6	13	40	1.70
45225171--45225219	21	2.3	21	80	13	55	28	0	4	67	1.09
45225397--45225438	16	2.7	16	85	3	50	61	0	4	33	1.17
45231654--45231694	21	2.0	21	85	0	55	19	26	34	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45231793--45231859	21	3.2	21	87	4	100	26	32	19	20	1.97
45242714--45242790	25	3.2	23	71	15	66	44	2	1	51	1.23
45242720--45242816	48	2.0	48	82	10	115	40	3	3	53	1.32
45248336--45248375	21	1.9	21	85	10	55	30	10	15	45	1.78
45253936--45253975	20	2.0	20	95	0	71	30	10	12	47	1.74
45253955--45253991	15	2.5	15	86	4	58	29	8	18	43	1.79
45256313--45256367	25	2.2	26	93	3	94	38	12	29	20	1.89
45265559--45265612	27	2.0	27	96	0	99	31	22	27	18	1.97
45269682--45269750	25	3.0	22	75	17	61	50	0	2	46	1.16
45275846--45276313	121	3.8	121	93	1	749	29	16	20	32	1.95
45288833--45288880	23	2.2	21	92	7	78	60	0	0	39	0.97
45288830--45288892	33	1.9	33	90	0	99	58	0	0	41	0.98
45288925--45288961	11	3.2	12	81	11	51	40	0	27	32	1.57
45288895--45289006	51	2.2	51	90	4	181	41	0	27	29	1.62
45288981--45289028	22	2.2	22	100	0	96	41	0	33	25	1.55
45289312--45289342	13	2.4	13	94	0	53	54	16	0	29	1.42
45289812--45289848	19	1.9	19	100	0	74	21	10	0	67	1.21
45303330--45303383	20	2.7	20	85	0	63	14	16	22	46	1.84
45307455--45308208	218	3.5	218	90	0	1159	26	18	26	28	1.98
45307821--45307936	45	2.6	44	82	6	119	25	18	27	29	1.98
45307647--45308194	44	12.5	44	71	10	211	26	17	25	29	1.98
45309392--45309460	30	2.3	30	100	0	138	18	31	39	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45315702--45315738	18	2.1	18	89	0	56	29	5	5	59	1.42
45315728--45315761	2	17.0	2	100	0	68	50	0	0	50	1.00
45320230--45320278	14	3.3	14	77	11	53	40	0	4	55	1.19
45327698--45327740	21	2.0	22	82	13	54	16	20	25	37	1.93
45335150--45335314	41	4.0	41	94	0	276	23	23	23	30	1.99
45335150--45335343	82	2.4	82	87	0	289	23	22	23	30	1.99
45335150--45335343	41	4.7	41	88	2	246	23	22	23	30	1.99
45338638--45338750	45	2.5	45	86	0	145	20	18	19	41	1.90
45345754--45345791	18	2.1	18	85	9	51	44	0	0	55	0.99
45348257--45348300	21	2.1	21	95	0	79	43	20	20	15	1.88
45352785--45352966	91	2.0	90	81	1	211	40	14	19	25	1.90
45354450--45354566	43	2.7	43	75	8	132	27	27	23	22	1.99
45355299--45355378	21	3.8	21	79	0	88	7	41	15	36	1.75
45355299--45355394	21	4.6	21	80	0	75	6	42	14	36	1.71
45355299--45355391	42	2.2	42	84	0	114	6	43	15	35	1.72
45369535--45369843	113	2.7	112	86	5	422	30	25	23	20	1.99
45374420--45374466	1	47.0	1	91	0	76	95	0	4	0	0.25
45379641--45380858	22	56.0	22	83	5	1367	43	29	1	26	1.62
45379670--45380858	43	27.5	43	83	4	1283	42	29	1	26	1.62
45379641--45380858	65	18.7	65	83	5	1258	43	29	1	26	1.62
45380034--45380114	27	3.2	25	79	16	80	43	34	1	20	1.60
45380059--45380111	27	2.0	27	92	0	88	43	32	1	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45380952--45381119	37	4.4	38	64	14	105	42	9	7	41	1.65
45380858--45381136	114	2.4	114	96	0	522	42	9	6	41	1.64
45384055--45384422	126	2.9	126	90	0	592	30	20	15	33	1.94
45392966--45393214	136	1.8	136	100	0	498	25	10	26	37	1.89
45397818--45397876	22	2.7	22	84	10	84	28	16	25	28	1.97
45403121--45403158	18	2.1	18	85	9	51	39	0	2	57	1.12
45403147--45403178	7	4.9	7	85	14	50	25	0	0	75	0.81
45403133--45403193	19	3.2	19	77	9	63	32	0	1	65	1.02
45403147--45403193	20	2.4	19	85	3	58	27	0	2	70	0.99
45404539--45404578	18	2.2	19	90	4	64	10	5	10	75	1.19
45404621--45404881	135	2.0	131	83	4	335	15	13	15	55	1.69
45406364--45406494	65	2.0	65	95	0	235	31	15	16	36	1.90
45409509--45409554	2	23.0	2	95	0	83	52	47	0	0	1.00
45410367--45410405	5	7.8	5	100	0	78	41	0	0	58	0.98
45410474--45410513	20	2.0	20	95	0	71	25	10	22	42	1.84
45410634--45410698	30	2.2	30	94	0	112	27	26	4	41	1.75
45413076--45413108	14	2.3	15	89	5	50	21	0	6	72	1.05
45419675--45419725	26	2.0	26	92	0	84	27	15	27	29	1.96
45420420--45420593	60	2.9	61	81	6	201	43	2	14	39	1.60
45421355--45421401	22	2.1	22	100	0	94	31	4	29	34	1.77
45422828--45422906	39	2.0	39	100	0	158	30	20	15	34	1.93
45426983--45427024	20	2.1	20	86	0	57	47	0	7	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45432081--45432122	20	2.1	20	86	0	57	47	0	7	45	1.30
45434600--45434653	17	3.1	17	80	15	56	66	0	27	5	1.13
45439381--45439442	30	2.1	30	96	0	115	38	11	16	33	1.84
45443474--45443526	23	2.4	22	79	14	56	69	11	0	18	1.17
45443659--45443832	54	3.2	54	89	8	255	5	29	2	61	1.34
45443828--45443856	9	3.0	10	90	10	51	0	51	0	48	1.00
45445277--45445389	43	2.6	42	77	15	106	27	17	24	30	1.97
45446843--45447140	23	12.6	23	78	7	267	28	13	17	40	1.87
45446841--45447138	92	3.1	94	86	4	375	28	12	17	40	1.87
45447039--45447155	24	5.0	23	84	4	110	25	12	19	41	1.87
45450094--45450126	2	16.5	2	100	0	66	48	0	0	51	1.00
45450352--45450388	9	4.1	9	89	0	56	45	10	10	32	1.74
45451298--45451324	5	5.4	5	100	0	54	22	18	18	40	1.91
45458119--45458340	23	9.4	23	68	17	91	38	17	12	31	1.87
45458170--45458307	73	1.9	72	83	8	181	38	18	13	29	1.89
45458247--45458340	47	2.0	45	89	4	143	41	15	11	30	1.83
45458271--45458414	76	1.9	74	92	2	243	40	15	10	33	1.81
45458314--45458369	29	1.9	29	96	0	103	39	16	10	33	1.83
45458369--45458453	21	3.9	21	71	17	66	45	14	10	29	1.78
45458347--45458444	45	2.2	45	92	0	160	43	14	11	30	1.80
45459305--45459434	43	3.0	42	82	16	176	30	29	19	21	1.97
45462476--45462513	20	1.9	20	88	0	58	52	13	5	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45462497--45462536	14	2.9	14	84	0	53	42	17	7	32	1.77
45469121--45469167	21	2.2	21	88	7	69	27	0	2	70	0.99
45470110--45470150	21	2.0	21	85	0	55	53	7	12	26	1.64
45476782--45476949	83	2.0	83	92	0	282	36	16	22	25	1.94
45479530--45479567	18	2.1	18	90	0	58	42	21	15	21	1.89
45479887--45479963	9	8.4	9	81	8	84	24	10	24	40	1.86
45483383--45483432	23	2.2	22	80	13	57	36	8	12	44	1.71
45491086--45491125	21	1.9	21	84	0	53	15	30	22	32	1.94
45501273--45501524	131	1.9	131	87	1	371	52	15	14	17	1.75
45516024--45516064	15	2.8	14	85	10	55	73	9	9	7	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135