genome.fa.s8.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  81  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31674712--31675516	402	2.0	402	100	0	1610	32	14	20	33	1.92
31681804--31681853	23	2.2	23	92	3	84	40	0	10	50	1.36
31685902--31685954	25	2.1	25	100	0	106	39	7	20	32	1.81
31686169--31686213	17	2.6	18	89	10	67	31	4	2	62	1.27
31686163--31686227	16	4.0	16	82	4	67	33	3	1	61	1.21
31686181--31686239	14	3.9	14	79	20	50	38	6	0	54	1.27
31694900--31694953	22	2.4	21	79	11	63	29	3	0	66	1.09
31694957--31695137	90	2.0	91	80	3	204	34	9	18	38	1.83
31708519--31708574	18	3.1	17	77	10	58	60	3	3	32	1.31
31712430--31712837	77	5.4	76	70	12	214	42	16	14	27	1.86
31712390--31712692	152	2.0	153	80	8	350	40	15	15	28	1.87
31713002--31713779	94	8.5	94	78	8	676	39	13	22	24	1.91
31713180--31713352	23	7.4	23	65	17	79	40	19	21	19	1.92
31713022--31713775	140	5.5	139	72	11	397	39	13	23	23	1.90
31713002--31713775	46	16.8	45	70	12	380	39	13	22	23	1.91
31713429--31713775	23	14.8	24	66	14	73	39	12	24	24	1.89
31713254--31713495	128	1.9	126	84	5	326	39	12	24	23	1.90
31713590--31713762	23	7.4	23	69	14	86	41	12	23	22	1.88
31723897--31723958	24	2.6	24	82	5	72	19	17	22	40	1.91
31727462--31727492	13	2.3	14	94	5	55	35	0	0	64	0.94
31735461--31735486	2	13.0	2	100	0	52	50	0	0	50	1.00
31741028--31741114	43	2.0	43	100	0	174	43	13	18	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31751641--31751697	21	2.7	21	91	0	87	38	8	8	43	1.67
31752992--31753494	251	2.0	252	94	0	873	30	10	19	39	1.86
31756313--31756338	2	13.0	2	100	0	52	0	50	0	50	1.00
31761984--31762010	2	13.5	2	100	0	54	48	0	0	51	1.00
31763902--31763926	12	2.1	12	100	0	50	40	8	20	32	1.81
31766837--31766893	25	2.3	25	85	11	73	57	17	0	24	1.39
31767513--31767602	26	3.4	26	68	17	67	41	8	2	47	1.47
31773216--31773254	16	2.4	16	86	0	60	33	17	5	43	1.72
31782916--31782980	16	3.8	18	78	17	50	52	4	0	43	1.22
31782950--31782982	12	2.6	13	85	4	50	63	0	0	36	0.95
31789582--31789648	33	2.0	34	97	2	127	58	14	0	26	1.37
31799870--31799927	20	2.9	20	76	0	62	29	17	36	17	1.92
31804707--31804790	30	2.8	30	87	0	123	29	19	7	44	1.77
31804712--31804792	15	5.3	16	71	16	73	29	18	6	45	1.73
31805778--31805839	19	3.5	19	69	26	55	38	0	1	59	1.07
31805784--31805853	32	2.2	32	97	0	131	41	0	1	57	1.08
31809489--31809539	25	2.1	24	82	10	59	15	7	0	76	1.00
31809503--31809553	24	2.1	25	82	10	61	13	9	0	76	1.02
31810909--31810947	19	1.9	19	90	10	60	48	0	5	46	1.24
31811269--31811301	17	1.9	17	100	0	66	42	9	0	48	1.35
31816075--31816102	4	7.0	4	100	0	56	75	0	0	25	0.81
31817968--31818036	33	2.0	33	83	8	84	26	7	10	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31818132--31818237	33	3.2	33	74	10	126	29	0	11	59	1.32
31818130--31818260	66	2.0	65	91	4	210	29	0	9	60	1.29
31818224--31818260	19	1.9	19	88	0	56	29	0	2	67	1.04
31820110--31820173	24	2.7	23	80	4	65	34	21	29	14	1.93
31820206--31820306	26	4.0	26	72	12	84	34	19	24	20	1.96
31823060--31823151	46	2.0	46	95	0	166	27	26	8	38	1.85
31824573--31824613	18	2.3	18	95	0	73	26	24	12	36	1.91
31825748--31825815	33	2.1	33	94	0	118	26	25	19	29	1.98
31830718--31830778	26	2.3	26	83	5	70	31	19	26	22	1.98
31833678--31833706	2	14.5	2	100	0	58	51	0	0	48	1.00
31837922--31838003	41	2.0	41	100	0	164	39	14	26	19	1.90
31839222--31839291	29	2.3	29	90	4	104	34	10	14	41	1.79
31839222--31839301	31	2.6	30	88	5	108	32	8	13	45	1.75
31839222--31839310	29	3.0	29	85	8	90	32	10	13	43	1.77
31839442--31839528	31	2.9	30	79	5	104	39	13	12	34	1.83
31851793--31851844	19	2.7	20	85	14	65	34	0	5	59	1.21
31860119--31860304	93	2.0	94	94	1	329	32	8	36	23	1.84
31862114--31862255	73	1.9	73	91	0	230	35	19	18	26	1.94
31863656--31863713	9	6.4	9	79	0	62	27	12	22	37	1.89
31863656--31863713	18	3.2	18	82	4	73	27	12	22	37	1.89
31865092--31865152	31	2.0	31	90	0	95	31	16	11	40	1.84
31865154--31865185	16	2.0	16	93	0	55	18	15	12	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31867549--31867745	96	2.1	96	92	0	322	34	19	9	36	1.84
31867760--31867784	12	2.1	12	100	0	50	48	16	0	36	1.46
31872005--31872067	30	2.1	30	90	0	99	53	15	3	26	1.57
31877878--31877915	2	19.5	2	89	5	60	47	0	2	50	1.15
31880138--31880466	4	82.2	4	98	0	613	25	1	24	48	1.58
31881798--31881825	12	2.3	12	100	0	56	57	14	0	28	1.38
31885650--31885768	61	2.0	61	96	0	220	27	9	9	53	1.63
31892102--31892141	17	2.4	16	84	8	53	75	2	0	22	0.93
31893384--31893416	1	33.0	1	100	0	66	0	0	0	100	0.00
31900924--31901009	3	28.7	3	82	9	104	65	3	2	29	1.22
31903257--31903450	110	1.8	105	86	7	282	51	6	8	33	1.58
31903703--31903742	20	2.0	21	90	5	64	45	27	5	22	1.73
31903702--31903749	20	2.3	21	82	3	62	43	33	4	18	1.69
31903568--31903864	151	2.0	151	85	4	411	40	30	6	22	1.79
31903872--31903913	14	3.0	14	83	16	52	26	0	30	42	1.55
31903862--31903912	21	2.5	22	81	12	63	25	0	31	43	1.55
31907301--31907339	20	2.0	20	90	5	62	30	23	2	43	1.67
31912415--31912786	144	2.6	144	96	0	681	29	23	18	28	1.97
31924438--31924500	30	2.1	29	88	8	92	68	0	1	30	0.99
31925626--31925701	33	2.4	32	86	4	109	30	2	0	67	1.05
31925663--31925688	7	3.7	7	100	0	52	11	0	0	88	0.52
31925626--31925711	33	2.7	32	83	3	93	27	2	3	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31928074--31928098	9	2.8	9	100	0	50	56	20	12	12	1.67
31928612--31928692	41	2.0	41	100	0	162	19	28	4	46	1.70
31935944--31935982	16	2.4	16	82	0	51	51	2	10	35	1.50
31935995--31936061	31	2.2	31	81	5	73	53	1	7	37	1.38
31939370--31939487	60	2.0	60	89	0	182	29	20	25	24	1.99
31940212--31940249	16	2.4	16	95	0	67	36	2	34	26	1.71
31940231--31940323	44	2.1	46	93	4	163	27	4	31	36	1.76
31940231--31940336	39	2.5	44	85	11	141	29	3	32	34	1.75
31942552--31942578	4	6.8	4	100	0	54	25	0	22	51	1.48
31944695--31944973	153	1.8	155	88	3	429	43	15	10	31	1.80
31945638--31945713	31	2.5	31	89	4	118	26	17	14	42	1.87
31946153--31947932	890	2.0	890	100	0	3560	37	14	14	32	1.88
31956130--31956185	25	2.2	25	83	0	67	26	19	5	48	1.70
31956138--31956186	25	2.0	25	87	0	71	24	16	6	53	1.66
31958978--31959066	46	1.9	46	93	0	151	35	10	24	29	1.88
31961411--31961550	46	3.0	46	90	0	217	30	25	7	37	1.84
31967420--31967693	125	2.2	125	88	3	410	28	16	22	32	1.95
31982599--31982737	40	3.3	42	88	6	201	25	20	24	29	1.99
31983157--31983209	11	4.6	11	76	17	54	64	0	0	35	0.94
31987328--31987357	14	2.2	14	94	5	53	13	10	0	76	1.01
31988678--31988741	27	2.4	27	82	10	80	59	3	4	32	1.34
31989883--31989933	19	2.7	19	84	0	57	19	5	3	70	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31989902--31989945	18	2.4	19	92	3	72	22	2	0	75	0.92
31991043--31991112	32	2.2	32	92	0	113	20	45	12	21	1.84
31992669--31992707	18	2.2	18	100	0	78	46	10	0	43	1.37
31994242--31994281	19	2.1	19	90	0	62	50	7	42	0	1.30
31994784--31994813	9	3.3	9	95	0	51	60	0	0	40	0.97
31994881--31994938	29	2.0	30	82	3	73	41	8	12	37	1.73
31996457--31996601	72	2.0	73	98	1	283	44	2	2	49	1.31
32007861--32007899	15	2.6	15	87	0	51	35	2	30	30	1.71
32020727--32020812	4	21.5	4	97	0	145	25	3	24	46	1.68
32022096--32022146	25	2.0	25	100	0	102	43	15	15	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135