genome.fa.s8.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  88  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33643883--33643935	21	2.5	22	82	14	74	64	5	0	30	1.17
33643886--33643965	23	3.5	25	75	14	75	60	5	2	32	1.32
33643987--33644033	3	15.7	3	86	0	67	61	4	2	31	1.27
33644316--33644349	4	8.5	4	100	0	68	26	0	23	50	1.50
33644563--33644609	3	15.7	3	86	0	67	61	4	2	31	1.27
33645131--33645183	21	2.5	22	82	14	74	64	5	0	30	1.17
33645134--33645213	23	3.5	25	75	14	75	60	5	2	32	1.32
33645235--33645328	3	31.3	3	93	0	161	64	2	1	31	1.12
33646650--33646691	22	1.9	22	90	0	66	21	21	14	42	1.88
33648203--33648252	25	1.9	27	84	8	68	36	2	4	58	1.29
33649212--33649246	17	2.0	18	94	5	63	31	0	11	57	1.34
33651349--33651418	32	2.2	33	87	7	99	15	21	37	25	1.93
33652901--33652928	14	2.0	14	100	0	56	28	21	35	14	1.92
33654998--33655044	20	2.3	21	77	3	51	23	4	4	68	1.26
33665713--33666213	255	2.0	255	91	1	808	38	17	14	29	1.89
33674796--33674842	23	2.0	23	92	8	78	44	0	6	48	1.28
33674799--33674857	23	2.7	23	82	12	70	49	1	5	44	1.34
33678627--33678680	17	2.8	19	83	16	76	46	7	0	46	1.31
33679899--33679966	29	2.3	29	84	0	82	45	2	10	41	1.53
33679914--33679969	29	1.9	29	92	0	94	41	1	10	46	1.49
33682384--33682429	21	2.3	19	85	7	56	56	4	6	32	1.45
33683740--33683776	2	18.5	2	94	0	65	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33702418--33702478	3	20.3	3	100	0	122	32	0	0	67	0.91
33705177--33705210	13	2.6	13	90	0	50	50	2	0	47	1.16
33710490--33710515	10	2.6	10	100	0	52	0	0	11	88	0.52
33710968--33711025	30	1.9	30	86	6	82	34	10	1	53	1.45
33711045--33711083	12	3.2	12	85	0	51	41	7	2	48	1.45
33714526--33714559	18	1.9	18	88	5	52	85	2	0	11	0.71
33714992--33715039	19	2.6	19	90	3	71	79	4	16	0	0.89
33714990--33715040	26	2.0	26	88	7	77	78	3	17	0	0.90
33715995--33716134	45	3.1	44	78	8	149	29	23	25	21	1.99
33716132--33716325	95	2.0	95	93	0	334	30	18	22	28	1.97
33716399--33716493	49	2.0	48	85	6	129	25	21	27	26	1.99
33716483--33716702	46	4.9	46	67	11	132	25	20	25	29	1.99
33716267--33716627	181	2.0	181	91	2	582	25	19	25	28	1.99
33716448--33716790	134	2.6	132	95	0	605	25	20	24	28	1.99
33719424--33719588	89	1.8	90	83	6	219	30	5	23	40	1.77
33719529--33719811	90	3.3	87	74	13	244	30	6	25	37	1.82
33727727--33727793	3	22.7	3	82	8	75	34	4	0	61	1.16
33727803--33727843	21	2.0	21	90	0	64	36	2	2	58	1.24
33728547--33729070	110	4.8	110	100	0	1048	32	14	17	35	1.91
33734218--33734411	102	1.9	102	81	6	236	29	14	22	32	1.94
33735564--33735609	16	2.8	17	74	6	51	32	2	17	47	1.60
33743819--33743908	34	2.6	34	89	0	135	41	16	10	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33745557--33747506	876	2.2	874	82	5	2356	28	15	14	40	1.87
33751272--33751474	27	7.5	27	76	1	183	37	21	18	21	1.94
33751271--33751474	80	2.5	81	84	2	241	38	21	18	21	1.94
33751497--33751544	24	2.0	24	95	0	87	22	8	20	47	1.77
33751504--33751560	24	2.4	24	87	0	78	21	8	22	47	1.78
33751686--33751738	26	2.0	26	85	0	70	13	22	28	35	1.92
33751744--33751911	32	5.3	32	85	0	203	20	19	20	39	1.92
33756453--33757087	324	2.0	324	84	5	836	29	17	12	40	1.87
33767117--33767172	29	1.9	29	100	0	112	33	3	25	37	1.73
33769565--33769595	12	2.6	12	94	0	53	25	38	25	9	1.86
33774269--33774311	22	2.0	22	90	0	68	39	6	11	41	1.68
33777093--33777132	17	2.4	17	100	0	80	15	27	37	20	1.92
33782870--33782920	19	2.8	18	85	5	66	27	7	1	62	1.33
33783106--33783130	12	2.1	12	100	0	50	24	0	0	76	0.80
33784437--33784487	21	2.4	21	96	0	93	31	27	29	11	1.92
33789594--33789623	10	3.0	10	90	0	51	40	23	0	36	1.55
33792082--33792111	10	3.0	10	90	0	51	40	23	0	36	1.55
33793930--33794342	221	1.8	226	86	6	599	40	29	8	21	1.83
33806264--33806372	19	5.8	19	86	4	168	35	14	11	37	1.83
33806268--33806372	36	2.8	37	92	2	158	36	14	12	37	1.84
33806257--33806372	55	2.1	55	87	6	164	36	14	11	37	1.82
33809128--33809606	239	2.0	240	99	0	951	45	7	12	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33811978--33812046	34	2.0	34	100	0	138	42	31	5	20	1.76
33812866--33812931	30	2.2	30	91	0	105	31	13	0	54	1.39
33813232--33813270	20	2.0	20	89	0	60	28	10	12	48	1.74
33813217--33813282	34	1.9	34	84	6	89	33	9	12	45	1.73
33820146--33820222	37	2.1	37	95	0	136	33	7	6	51	1.56
33820306--33820348	23	1.9	23	95	4	79	65	2	2	30	1.18
33827385--33827576	100	1.9	98	84	8	253	54	13	9	22	1.68
33833324--33833509	98	1.9	98	87	6	279	43	11	17	27	1.83
33836278--33836312	6	5.8	6	86	0	52	14	45	0	40	1.45
33836265--33836312	24	2.0	24	87	0	69	12	41	4	41	1.62
33838748--33838787	21	2.0	21	85	14	57	60	2	0	37	1.11
33840056--33840134	18	4.5	17	87	10	106	40	24	11	24	1.87
33840054--33840126	9	8.2	9	88	8	114	42	23	10	23	1.85
33842476--33842519	18	2.4	18	88	0	61	18	0	40	40	1.50
33845572--33845661	27	3.3	27	73	11	85	25	27	13	33	1.93
33845577--33845682	54	2.0	54	86	0	149	27	29	13	30	1.94
33845616--33845688	27	2.7	26	74	17	69	26	30	12	31	1.92
33845586--33845699	54	2.1	54	83	3	140	26	29	12	31	1.92
33857605--33857670	27	2.4	27	92	5	107	27	21	18	33	1.96
33857605--33857689	27	3.2	26	83	6	89	25	22	17	34	1.96
33859176--33859218	18	2.5	17	76	3	50	34	0	2	62	1.08
33859303--33859363	16	3.9	15	74	6	50	63	0	3	32	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33859935--33860000	27	2.4	27	92	5	107	27	21	18	33	1.96
33859935--33860019	27	3.2	26	83	6	89	25	22	17	34	1.96
33861506--33861548	18	2.5	17	76	3	50	34	0	2	62	1.08
33864630--33864810	27	6.7	28	86	8	234	32	16	14	36	1.89
33864630--33864810	81	2.2	82	87	5	262	32	16	14	36	1.89
33866090--33866120	12	2.5	12	94	5	53	64	0	0	35	0.94
33866687--33866809	41	3.3	41	61	27	99	19	34	31	13	1.91
33866687--33866859	71	2.4	71	100	0	346	21	34	31	12	1.91
33868427--33868497	34	2.2	33	89	5	108	28	23	22	25	2.00
33872530--33872963	114	3.8	112	77	8	371	24	22	26	26	2.00
33873237--33873274	14	2.7	14	84	12	51	13	5	34	47	1.65
33873603--33873684	21	3.9	19	77	13	65	19	2	31	46	1.63
33873603--33873684	7	12.0	6	75	16	56	19	2	31	46	1.63
33873603--33873684	14	5.9	13	77	17	67	19	2	31	46	1.63
33874213--33874590	73	5.2	73	70	15	330	22	15	21	39	1.92
33874191--33874611	147	2.9	146	96	1	761	22	16	22	38	1.92
33874649--33874988	173	2.0	169	88	3	511	23	39	9	28	1.85
33876645--33877121	9	54.8	9	68	17	199	47	18	2	30	1.64
33876642--33876788	44	3.5	40	79	13	152	49	16	2	31	1.59
33876720--33877085	16	22.8	16	67	18	124	47	19	2	30	1.62
33876708--33876756	25	2.0	24	84	4	62	51	14	2	32	1.54
33876753--33876827	12	6.3	12	81	9	91	49	14	1	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33876876--33877123	25	9.9	25	81	6	259	44	20	3	31	1.67
33876895--33877083	99	1.9	99	92	2	317	43	21	3	31	1.70
33881667--33881723	21	2.7	21	91	0	87	35	21	42	1	1.63
33881688--33881735	12	4.2	12	74	15	57	37	20	41	0	1.53
33882187--33882437	42	5.9	42	86	3	288	26	23	19	31	1.98
33882186--33882456	85	3.2	85	82	4	278	26	22	19	30	1.98
33893684--33893721	20	2.0	19	85	10	51	31	31	7	28	1.86
33895636--33895769	42	3.1	43	75	8	137	24	15	26	33	1.95
33896297--33896445	78	1.9	77	94	1	262	33	7	17	41	1.77
33907163--33907519	131	2.7	131	95	0	624	31	13	15	40	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135