genome.fa.s8.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  91  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34518259--34518297	12	3.3	12	83	16	55	41	0	0	58	0.98
34523227--34523257	15	2.1	15	93	0	53	70	19	6	3	1.22
34524581--34524630	22	2.2	23	92	3	84	36	30	12	22	1.90
34527341--34527386	24	2.0	24	95	4	85	41	26	4	28	1.74
34529970--34530001	6	5.3	6	100	0	64	50	0	15	34	1.45
34532565--34532602	16	2.5	16	87	8	53	47	7	10	34	1.67
34533589--34533625	2	18.5	2	94	0	65	48	0	2	48	1.15
34534609--34534670	27	2.3	28	86	13	94	22	30	20	25	1.98
34534833--34535163	102	3.1	108	84	9	434	55	16	1	26	1.50
34535219--34535357	72	1.9	71	98	1	269	54	15	0	29	1.42
34535219--34535328	34	3.1	34	67	15	98	53	17	0	29	1.44
34535244--34535361	38	3.2	38	69	13	129	55	16	0	27	1.41
34535363--34535417	27	2.0	27	86	6	76	27	27	27	18	1.98
34536017--34536071	24	2.2	25	87	3	76	43	1	0	54	1.10
34536231--34536267	7	5.3	7	100	0	74	0	59	13	27	1.35
34536564--34536648	11	7.5	11	68	5	53	35	0	8	56	1.29
34536566--34536725	57	2.9	57	90	3	238	36	0	10	52	1.36
34536572--34536736	53	3.0	54	88	5	226	33	0	12	53	1.39
34536803--34536916	60	1.9	59	87	5	169	30	0	14	55	1.39
34536876--34537211	103	3.3	100	82	11	382	26	0	17	55	1.46
34539577--34539869	76	3.8	77	87	5	416	25	7	10	56	1.57
34542938--34542994	27	2.1	27	86	0	78	29	24	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34544365--34544426	29	2.1	31	88	11	94	48	9	0	41	1.36
34545067--34545121	23	2.3	25	82	17	73	61	5	0	32	1.19
34545285--34545323	20	1.9	20	85	15	53	46	0	0	53	1.00
34547601--34547722	60	2.0	60	95	0	217	28	20	17	33	1.95
34550589--34550636	3	16.0	3	84	0	60	60	4	4	31	1.35
34551612--34551649	14	2.5	16	87	8	53	7	10	2	78	1.04
34557829--34558146	43	7.4	43	89	3	392	24	28	20	26	1.99
34560129--34560177	25	2.0	25	91	0	80	34	0	22	42	1.54
34560148--34560242	16	5.8	16	77	9	86	30	2	20	47	1.61
34560141--34560487	9	42.2	9	65	24	103	34	1	19	44	1.60
34560128--34560220	41	2.3	41	88	0	132	32	1	20	46	1.58
34560128--34560211	25	3.4	25	82	8	77	32	0	20	47	1.50
34560166--34560239	25	3.0	25	85	0	94	29	2	21	45	1.65
34560141--34560242	41	2.5	41	82	6	127	31	1	20	46	1.62
34560234--34560310	32	2.3	34	80	17	97	41	0	15	42	1.47
34560259--34560301	12	4.0	11	77	17	54	41	0	11	46	1.40
34560286--34560310	13	1.9	13	100	0	50	36	0	16	48	1.46
34560354--34560436	25	3.3	25	78	6	96	34	1	20	43	1.60
34560392--34560479	16	5.5	16	70	18	51	28	2	21	47	1.63
34561551--34561599	18	2.7	18	96	0	89	38	20	0	40	1.53
34561899--34561960	32	1.9	32	96	0	115	46	16	16	20	1.83
34563570--34563623	23	2.5	22	82	8	58	44	0	7	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34563572--34563638	20	3.2	21	73	14	50	47	0	7	44	1.31
34563645--34563689	21	2.2	20	88	11	65	13	6	0	80	0.91
34563877--34563905	2	14.5	2	100	0	58	48	0	0	51	1.00
34564541--34564573	7	5.0	7	85	14	52	30	54	0	15	1.41
34564541--34564565	12	2.1	12	100	0	50	32	52	0	16	1.44
34564607--34564640	15	2.3	15	90	5	52	35	29	0	35	1.58
34565046--34565323	41	6.8	40	87	3	351	26	29	24	19	1.98
34565377--34565495	40	3.0	40	80	3	143	24	18	19	37	1.94
34567090--34567907	113	7.2	113	77	8	838	33	17	20	27	1.96
34567035--34568062	227	4.6	227	90	3	1598	33	17	21	28	1.95
34568604--34568637	14	2.3	15	90	5	52	35	0	29	35	1.58
34569052--34569127	7	10.9	7	81	5	64	21	1	46	31	1.60
34569046--34569124	21	3.8	21	74	12	72	22	1	43	32	1.62
34569105--34569275	89	1.9	89	83	2	218	29	1	26	41	1.66
34569324--34569377	21	2.6	21	72	21	51	50	1	5	42	1.36
34569372--34569415	20	2.2	20	87	0	61	63	4	6	25	1.38
34569401--34569449	18	2.7	18	78	12	55	79	2	4	14	0.97
34569401--34569449	12	4.0	12	79	12	55	79	2	4	14	0.97
34569412--34569455	19	2.2	20	88	8	63	79	2	4	13	0.98
34569442--34569535	47	2.0	47	85	0	125	41	7	3	47	1.47
34569899--34570324	198	2.2	198	95	0	773	28	15	19	35	1.93
34576205--34576328	42	2.9	41	85	8	133	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34576234--34576348	42	2.7	43	87	8	162	22	23	22	31	1.99
34576295--34576658	182	2.0	182	97	0	683	25	20	25	29	1.99
34579520--34579649	68	2.0	64	83	8	163	51	3	3	40	1.38
34586474--34586564	45	2.0	45	84	0	119	59	6	14	19	1.57
34589335--34589522	44	4.3	44	79	4	209	29	27	15	27	1.96
34589346--34589522	88	2.0	88	90	2	275	29	28	15	26	1.96
34590178--34590315	44	3.2	43	69	19	140	23	24	24	27	2.00
34590209--34590434	44	5.2	43	67	15	124	23	22	25	28	1.99
34590159--34590526	88	4.2	88	90	2	460	25	23	23	27	2.00
34590159--34590526	175	2.1	175	85	5	485	25	23	23	27	2.00
34591498--34591545	6	8.0	6	81	9	53	0	16	4	79	0.89
34591977--34592030	8	6.5	8	81	8	63	7	3	5	83	0.91
34591977--34592030	25	2.2	25	82	0	63	7	3	5	83	0.91
34591972--34592040	17	4.0	17	81	7	77	5	4	7	82	0.94
34591991--34592040	8	6.0	8	84	9	55	6	2	6	86	0.79
34595490--34595580	45	2.0	45	84	0	119	59	6	14	19	1.57
34597908--34597954	25	1.9	25	82	4	60	53	6	10	29	1.60
34598066--34598109	19	2.1	20	84	16	54	61	4	0	34	1.16
34600129--34600162	14	2.4	14	85	0	50	67	5	2	23	1.26
34600173--34600211	11	3.5	11	83	13	53	64	17	12	5	1.46
34601093--34601149	16	3.5	16	75	17	55	75	1	17	5	1.07
34605488--34605554	32	2.1	32	100	0	134	28	14	5	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34608469--34608547	40	2.0	40	85	5	106	15	29	17	37	1.90
34609898--34609935	16	2.5	15	83	8	51	68	0	0	31	0.90
34612541--34612591	5	10.2	5	100	0	102	39	19	0	41	1.52
34613337--34613410	28	2.4	31	76	17	82	32	22	22	21	1.98
34613342--34613407	28	2.4	28	87	2	89	30	22	24	22	1.99
34613537--34613616	26	3.1	26	88	0	115	36	21	22	20	1.95
34613750--34613896	27	5.5	27	83	8	160	21	19	20	38	1.93
34613766--34613881	53	2.2	53	84	4	153	22	16	23	37	1.93
34613780--34613896	27	4.4	27	84	11	161	20	19	19	40	1.92
34616247--34616271	5	5.0	5	100	0	50	80	0	0	20	0.72
34617949--34617986	19	2.0	20	89	5	60	39	0	2	57	1.12
34618265--34618316	26	2.0	27	84	3	70	28	1	1	67	1.12
34625015--34625051	9	4.3	9	80	13	51	35	0	0	64	0.94
34625084--34625535	228	2.0	228	95	0	823	38	9	6	45	1.62
34625544--34625587	21	2.1	21	83	8	54	38	2	2	56	1.24
34632117--34632145	13	2.2	13	100	0	58	27	24	17	31	1.97
34633071--34633108	20	1.9	20	84	10	51	50	5	5	39	1.48
34635665--34636107	221	2.0	222	99	0	870	29	20	18	30	1.97
34639658--34639713	17	3.5	16	79	11	62	44	1	0	53	1.11
34647908--34647960	28	1.9	27	84	3	70	64	1	5	28	1.27
34647938--34647981	23	2.0	21	86	8	61	63	2	4	29	1.26
34648008--34648078	3	22.7	3	83	8	54	60	7	1	30	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34648103--34648163	30	2.0	30	100	0	122	54	13	13	19	1.71
34651855--34651915	27	2.3	27	100	0	122	44	18	13	24	1.85
34651866--34651921	27	2.3	23	82	17	62	46	12	17	23	1.82
34659461--34659488	13	2.2	13	100	0	56	50	21	7	21	1.72
34660892--34660934	20	2.2	20	95	0	77	65	16	0	18	1.28
34667347--34667475	50	2.6	50	83	0	159	27	21	29	20	1.98
34668169--34668203	17	2.1	17	89	5	54	65	0	34	0	0.93
34668963--34668994	6	5.3	6	100	0	64	84	0	0	15	0.63
34669084--34669129	2	23.0	2	100	0	92	0	0	50	50	1.00
34669658--34669785	45	3.2	38	76	15	123	17	22	22	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135