genome.fa.s8.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  75  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29381413--29381996	129	4.8	125	76	13	554	14	28	14	42	1.84
29380606--29383294	240	11.4	228	77	11	2230	14	28	14	42	1.85
29382009--29383317	123	11.0	121	79	8	1369	15	28	14	42	1.86
29380606--29383194	714	3.7	713	85	7	3112	14	28	14	42	1.85
29384745--29384819	30	2.5	30	80	4	89	34	16	5	44	1.70
29397035--29397122	44	2.0	44	93	0	149	47	10	6	35	1.64
29397468--29397525	15	3.8	15	78	17	66	31	0	0	68	0.89
29397488--29397538	23	2.2	24	82	10	61	35	1	0	62	1.06
29398202--29398239	16	2.4	16	90	0	58	36	2	31	28	1.71
29402545--29402573	11	2.6	11	100	0	58	20	27	6	44	1.77
29402580--29402623	12	3.8	12	81	3	54	40	0	0	59	0.98
29403781--29403824	12	3.8	12	81	3	54	40	0	0	59	0.98
29404730--29404778	21	2.3	21	79	6	55	34	36	26	2	1.68
29404993--29405171	45	3.9	44	78	14	143	48	26	0	25	1.52
29404994--29405171	46	3.9	46	80	7	193	48	26	0	25	1.52
29404994--29405181	70	2.7	68	83	9	222	48	25	0	25	1.51
29404993--29405181	23	8.2	23	77	10	172	48	25	0	25	1.51
29405176--29405946	115	6.7	115	99	0	1497	39	8	7	43	1.64
29409058--29409097	19	2.1	19	95	0	71	25	0	15	60	1.35
29409157--29409206	11	4.5	11	80	12	50	50	6	0	44	1.26
29409155--29409195	21	1.9	22	90	5	66	53	4	0	41	1.22
29414383--29414420	5	7.6	5	93	0	67	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29415085--29415139	25	2.2	26	78	12	62	14	20	5	60	1.54
29434345--29434462	21	5.7	21	70	6	96	14	22	20	43	1.87
29434406--29434487	21	3.9	21	78	0	83	14	20	19	45	1.85
29434345--29434485	42	3.4	42	82	6	171	15	21	19	43	1.88
29455271--29456261	201	5.0	201	89	4	1377	19	30	19	30	1.96
29456097--29456392	162	1.8	162	91	1	486	21	31	20	26	1.98
29459068--29459124	27	2.1	28	83	9	73	50	0	3	45	1.18
29462119--29462143	12	2.1	12	100	0	50	64	0	16	20	1.30
29462290--29462346	26	2.2	26	87	6	80	43	17	14	24	1.86
29464990--29465014	11	2.3	11	100	0	50	0	12	0	88	0.53
29470876--29471020	64	2.2	64	84	8	186	39	2	11	46	1.54
29470906--29471062	64	2.5	61	81	12	169	38	2	13	45	1.57
29482357--29482400	23	2.0	23	82	13	56	38	0	20	40	1.53
29482613--29482766	37	4.2	37	76	3	139	19	14	27	38	1.90
29488808--29488877	16	4.4	16	96	0	113	35	2	35	25	1.71
29498460--29498572	43	2.7	43	84	4	140	31	24	16	26	1.96
29502551--29502585	17	2.2	17	90	10	56	20	34	31	14	1.92
29506979--29507040	19	3.2	19	71	17	56	27	3	6	62	1.35
29509216--29509269	29	1.9	27	85	7	72	55	0	3	40	1.17
29513553--29513581	14	2.0	15	93	6	51	0	37	6	55	1.27
29517288--29517338	20	2.6	19	84	9	66	41	15	15	27	1.88
29518055--29518091	12	3.0	13	76	15	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29519873--29519935	24	2.6	24	92	2	99	39	19	25	15	1.91
29520377--29520419	21	2.0	21	90	0	68	39	18	0	41	1.51
29522151--29522199	10	5.3	9	86	11	64	73	2	0	24	0.94
29522144--29522198	19	2.8	20	86	10	71	72	1	0	25	0.94
29522921--29522957	18	2.1	18	94	0	65	59	2	13	24	1.47
29526333--29526365	15	2.2	15	100	0	66	39	0	18	42	1.50
29533603--29533628	13	2.0	13	100	0	52	61	30	0	7	1.24
29537690--29537728	21	1.9	20	84	5	51	64	2	15	17	1.41
29538625--29538743	25	4.8	24	71	11	80	18	23	21	36	1.95
29538697--29538826	25	5.3	25	71	17	85	19	26	20	33	1.96
29538697--29538804	49	2.2	49	86	6	148	19	27	20	32	1.97
29546377--29546436	29	2.1	29	93	0	102	16	25	33	25	1.96
29547348--29547400	17	3.2	16	92	7	88	45	5	26	22	1.74
29551404--29551453	17	2.9	17	87	0	73	42	4	26	28	1.73
29565579--29566768	641	1.9	641	82	4	1497	38	9	17	34	1.82
29571200--29571277	24	3.2	24	75	12	86	17	29	21	30	1.97
29574255--29574298	14	3.1	14	86	3	61	45	11	29	13	1.79
29589272--29589310	20	2.0	20	90	10	62	15	23	5	56	1.59
29595749--29595860	27	4.2	27	93	2	190	17	18	21	41	1.90
29595749--29595860	53	2.1	54	94	1	199	17	18	21	41	1.90
29611203--29611675	31	15.6	29	65	18	96	28	9	19	43	1.81
29611139--29611810	180	3.7	183	87	4	933	28	9	19	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29626353--29626524	86	2.0	86	93	0	290	28	22	17	31	1.97
29638884--29638971	44	2.0	44	100	0	176	29	4	11	54	1.56
29639841--29639954	58	2.0	58	98	0	219	35	21	18	24	1.95
29641846--29641882	17	2.2	17	100	0	74	40	5	5	48	1.49
29642736--29642810	33	2.3	34	76	6	82	33	1	0	65	1.01
29650993--29651030	13	2.7	14	88	8	51	55	5	23	15	1.61
29651730--29651783	26	2.1	26	92	0	90	25	18	5	50	1.69
29654485--29654590	52	2.0	52	94	0	185	37	15	2	44	1.61
29655566--29655623	30	1.9	30	89	0	89	41	3	24	31	1.71
29655961--29656265	56	5.8	53	84	5	340	26	21	28	23	1.99
29655961--29656265	50	5.8	50	86	2	322	26	21	28	23	1.99
29659308--29659556	50	4.8	50	88	3	309	25	22	29	21	1.99
29662246--29662411	27	6.6	24	72	10	91	33	17	25	22	1.96
29662303--29662411	27	4.1	27	76	15	102	36	14	24	23	1.93
29662464--29662564	25	4.1	25	79	2	71	36	16	23	22	1.94
29662477--29662564	25	3.6	25	81	1	106	36	17	23	22	1.94
29675934--29676002	36	1.9	36	90	0	111	47	8	2	40	1.49
29691154--29691195	16	2.6	16	75	14	50	54	0	0	45	0.99
29697637--29697669	17	1.9	17	88	11	50	21	0	12	66	1.23
29697715--29697739	13	1.9	13	100	0	50	32	0	4	64	1.12
29698908--29698943	14	2.6	14	95	0	63	27	0	0	72	0.85
29699829--29699871	19	2.3	18	84	15	52	20	23	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29701136--29701172	17	2.1	18	90	5	58	29	24	0	45	1.53
29701888--29701940	16	3.2	17	76	15	58	83	11	0	5	0.81
29716721--29716758	14	2.5	15	87	8	51	71	0	15	13	1.16
29717872--29717901	15	2.0	15	100	0	60	0	53	13	33	1.40
29717887--29718680	88	9.0	88	90	0	1219	27	22	24	25	2.00
29724668--29724767	11	8.7	11	70	16	60	63	7	4	26	1.38
29724703--29724750	25	1.9	25	87	8	71	60	10	2	27	1.41
29724668--29724767	22	4.4	22	72	15	69	63	7	4	26	1.38
29724714--29724775	22	2.6	22	77	10	61	66	8	6	19	1.40
29727144--29727391	134	1.9	134	94	1	444	27	25	11	35	1.90
29732775--29732969	95	2.0	96	99	1	383	45	6	6	42	1.54
29732986--29733019	17	2.1	17	88	5	52	29	0	0	70	0.87
29737947--29738219	136	2.0	137	98	0	530	50	11	12	26	1.74
29743987--29744030	21	2.1	21	91	8	72	34	31	4	29	1.78
29748435--29748484	6	8.3	6	100	0	100	34	0	16	50	1.45
29748768--29748801	11	3.4	10	88	11	52	0	8	0	91	0.43
29748826--29749474	321	2.0	322	98	0	1264	32	12	22	32	1.92
29750841--29751112	88	3.1	85	83	5	323	36	19	12	31	1.89
29751233--29751348	19	5.9	19	69	17	58	62	0	3	33	1.18
29751265--29751327	32	2.0	32	83	0	81	65	1	1	31	1.12
29751246--29751369	42	2.9	41	78	19	105	62	1	2	33	1.18
29751225--29751369	21	7.2	20	69	16	86	62	2	2	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29751264--29751369	10	10.2	10	69	13	63	63	1	1	33	1.16
29751575--29751607	17	2.0	16	94	5	57	18	9	0	72	1.10
29755080--29755316	118	2.0	119	96	0	440	44	24	18	13	1.85
29756183--29756226	11	4.0	11	82	8	54	11	2	4	81	0.92
29756511--29756567	26	2.2	26	81	12	64	31	8	1	57	1.39
29760960--29761657	44	16.2	44	66	10	208	31	16	21	30	1.96
29761345--29761721	85	4.4	85	68	10	221	32	16	20	30	1.95
29760908--29761698	129	6.1	129	92	0	1244	31	16	21	30	1.96
29765331--29765400	30	2.4	29	80	2	77	44	2	5	47	1.41
29765974--29766041	31	2.3	30	87	5	93	29	5	14	50	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135