genome.fa.s8.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  126  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45520064--45520123	18	3.3	18	76	19	54	26	3	0	70	1.03
45525236--45525269	17	2.0	17	88	0	50	58	2	8	29	1.43
45531228--45531277	18	2.6	19	81	6	57	20	26	2	52	1.57
45568125--45568166	19	2.2	19	83	8	50	28	4	0	66	1.12
45569594--45569646	27	2.0	27	82	14	65	58	3	0	37	1.16
45582297--45582358	30	2.0	31	81	9	74	35	14	3	46	1.61
45584081--45584127	22	2.1	22	96	0	85	61	0	6	31	1.21
45584675--45584752	39	2.0	38	95	2	138	34	21	17	25	1.96
45595663--45595896	50	4.7	50	88	2	317	25	20	31	22	1.98
45601514--45601553	16	2.5	16	91	0	62	47	2	7	42	1.45
45601626--45601653	9	3.1	9	100	0	56	32	0	10	57	1.33
45601542--45601833	68	4.3	68	98	0	561	40	4	8	46	1.54
45601694--45601721	9	3.1	9	100	0	56	32	0	10	57	1.33
45601762--45601789	9	3.1	9	100	0	56	32	0	10	57	1.33
45602109--45602149	4	10.2	4	94	0	73	48	0	24	26	1.51
45602147--45602190	3	14.7	3	95	0	79	63	2	0	34	1.07
45607482--45607520	17	2.2	17	86	9	51	51	2	30	15	1.57
45609666--45609729	31	2.1	31	84	0	83	15	26	32	25	1.95
45618432--45618459	2	14.0	2	100	0	56	50	50	0	0	1.00
45619762--45619797	2	18.0	2	88	0	54	52	2	0	44	1.15
45619894--45620017	57	2.2	57	82	7	153	45	5	17	31	1.72
45619979--45620041	31	2.0	31	87	0	90	42	9	19	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45622015--45622083	17	4.1	17	77	7	59	20	20	26	33	1.97
45622030--45622092	17	3.6	17	82	6	74	19	17	28	34	1.94
45627291--45627331	22	2.0	21	86	13	59	24	2	24	48	1.63
45627857--45627910	21	2.7	20	79	2	63	25	25	29	18	1.98
45630383--45630429	23	2.1	21	85	14	60	25	2	27	44	1.65
45635382--45635425	15	2.9	15	75	3	52	54	2	2	40	1.25
45635382--45635482	31	3.3	30	78	13	116	51	3	2	41	1.35
45635382--45635455	29	2.4	29	84	10	87	50	2	2	44	1.30
45638171--45638206	9	4.0	9	100	0	72	33	11	0	55	1.35
45641398--45641434	2	18.0	2	94	5	65	48	0	2	48	1.15
45644845--45644957	3	37.7	3	78	13	117	30	2	2	63	1.22
45645064--45645144	3	26.3	3	75	18	69	33	3	2	60	1.27
45645430--45645465	16	2.2	16	90	0	54	33	11	5	50	1.61
45648427--45648587	80	2.0	81	98	1	315	43	3	14	37	1.64
45652079--45652111	2	16.5	2	93	0	57	48	3	0	48	1.17
45653481--45653518	9	4.3	9	86	3	51	68	5	2	23	1.23
45657463--45657575	43	2.6	43	83	2	138	32	21	16	29	1.95
45657492--45657700	43	4.8	43	73	8	140	31	19	18	30	1.96
45657855--45658032	88	2.0	89	98	1	349	50	8	12	28	1.70
45664836--45664928	48	1.9	48	93	0	159	26	19	16	37	1.92
45665554--45665596	21	2.0	21	82	8	52	13	16	13	55	1.69
45674202--45674253	21	2.5	21	87	0	77	28	7	32	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45674461--45674523	33	2.0	31	84	6	81	41	0	4	53	1.22
45676541--45676578	7	5.4	7	90	0	58	42	7	28	21	1.81
45676536--45676578	21	2.0	21	90	0	68	39	9	27	23	1.85
45676541--45676578	14	2.7	14	95	0	67	42	7	28	21	1.81
45676492--45676621	65	2.0	65	93	0	224	33	14	23	27	1.94
45676588--45676656	35	2.0	35	82	0	84	36	15	20	27	1.93
45676623--45676753	51	2.6	51	82	1	156	35	15	21	28	1.94
45683137--45683174	7	5.4	7	90	0	58	42	7	28	21	1.81
45683137--45683174	14	2.7	14	95	0	67	42	7	28	21	1.81
45683132--45683174	21	2.0	21	90	0	68	39	9	27	23	1.85
45690842--45690872	12	2.5	13	89	10	55	48	0	0	51	1.00
45697758--45697791	17	2.0	17	100	0	68	35	5	23	35	1.79
45702296--45702349	23	2.3	23	81	9	65	70	1	0	27	0.98
45706632--45706668	16	2.3	16	95	0	65	18	5	5	70	1.27
45709623--45709677	24	2.3	23	81	9	65	45	0	5	49	1.25
45719757--45719800	13	3.3	14	84	9	56	50	0	0	50	1.00
45719759--45719798	14	2.8	16	78	21	52	47	0	0	52	1.00
45720178--45720243	29	2.3	29	100	0	132	39	22	13	24	1.90
45729563--45729596	16	2.1	17	88	5	52	76	11	0	11	1.02
45731038--45731079	14	3.2	13	90	10	59	76	4	0	19	0.96
45731081--45731164	21	3.8	20	72	20	60	73	2	2	21	1.06
45731038--45731135	12	8.1	11	72	22	56	74	3	2	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45731059--45731168	46	2.4	45	82	13	127	74	2	1	20	1.03
45731101--45731168	8	8.8	8	74	6	50	77	1	1	19	0.92
45731898--45731946	20	2.5	20	93	0	80	57	20	4	18	1.57
45734341--45734387	23	2.1	22	92	4	76	76	0	21	2	0.89
45738249--45738298	21	2.4	21	80	6	57	34	22	16	28	1.95
45738162--45738410	113	2.2	113	94	0	435	31	16	18	33	1.94
45738352--45738410	21	2.8	22	70	14	52	28	18	18	33	1.95
45744738--45744921	83	2.2	83	92	3	300	30	13	12	42	1.81
45744769--45744944	83	2.1	83	85	2	228	31	15	13	39	1.85
45748258--45748343	32	2.7	32	78	8	93	46	16	9	27	1.77
45754819--45755126	154	2.0	154	100	0	616	41	6	7	44	1.59
45755256--45755338	33	2.5	33	80	5	105	38	16	18	26	1.92
45758934--45759008	39	1.9	39	88	0	114	28	4	20	48	1.67
45758943--45759028	39	2.2	39	83	4	102	27	4	20	46	1.71
45763789--45763922	25	5.3	25	69	4	72	32	21	13	32	1.92
45763805--45763899	50	1.9	50	83	12	124	31	23	14	30	1.94
45763835--45763981	76	1.9	76	84	2	197	32	19	12	34	1.90
45763911--45764031	50	2.4	50	83	2	145	36	18	10	34	1.85
45763943--45763998	25	2.2	26	78	9	62	35	17	12	33	1.88
45770042--45770241	43	4.7	43	76	10	162	35	24	18	22	1.95
45770004--45770238	42	5.6	43	78	8	223	34	23	18	22	1.96
45770004--45770203	85	2.4	85	90	2	314	34	24	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45770004--45770239	85	2.8	83	85	3	312	34	24	18	22	1.96
45770217--45770267	26	2.0	26	92	0	84	23	33	25	17	1.96
45775863--45775913	25	2.0	26	84	3	68	43	11	5	39	1.66
45776019--45776063	11	4.1	11	77	11	56	48	0	0	51	1.00
45776020--45776063	17	2.7	17	82	6	56	50	0	0	50	1.00
45776236--45776287	23	2.3	23	89	0	77	25	36	23	15	1.93
45779412--45779552	68	2.1	68	81	7	162	26	23	14	35	1.93
45792845--45793041	32	6.2	32	78	1	153	36	22	21	19	1.95
45792839--45793021	64	2.9	64	81	3	199	36	21	21	20	1.95
45794533--45794760	53	4.3	52	76	10	196	26	13	18	41	1.87
45794492--45794760	80	3.4	80	81	6	298	26	13	17	42	1.87
45794506--45794760	27	9.6	27	78	5	218	26	12	18	42	1.86
45795539--45795580	21	2.0	21	95	0	75	38	21	14	26	1.91
45799490--45799543	28	1.9	28	85	7	74	31	20	27	20	1.97
45799735--45799801	32	2.1	32	86	2	91	38	20	20	19	1.93
45799749--45799811	32	2.0	32	93	0	108	34	19	23	22	1.96
45799827--45799890	27	2.4	27	82	12	71	31	21	25	21	1.98
45799955--45800013	24	2.5	23	83	8	82	45	23	8	22	1.79
45800053--45800200	27	5.5	27	85	3	181	25	17	19	37	1.93
45800047--45800200	54	2.9	53	88	4	211	24	18	20	36	1.95
45800053--45800207	81	1.9	81	86	2	222	25	19	18	36	1.94
45800724--45800833	32	3.4	32	73	5	123	34	25	22	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45800719--45800889	32	5.4	31	72	6	103	35	21	22	21	1.96
45800714--45800874	64	2.5	64	84	2	216	35	21	22	20	1.96
45801599--45801638	21	1.9	21	94	0	71	42	20	2	35	1.65
45811940--45812080	63	2.2	63	88	0	210	20	26	24	28	1.99
45812679--45812758	39	2.1	39	100	0	160	72	7	17	2	1.19
45822695--45822755	30	2.0	30	100	0	122	34	19	9	36	1.85
45824382--45824434	21	2.5	21	81	6	72	33	9	33	22	1.86
45829736--45829810	37	2.1	36	84	2	96	36	14	9	40	1.78
45835650--45835679	11	2.7	11	94	0	51	40	0	3	56	1.16
45843977--45844001	11	2.3	11	100	0	50	0	0	8	92	0.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135