genome.fa.s8.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  130  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46889003--46889147	72	2.0	72	100	0	290	33	11	19	36	1.87
46897620--46898139	258	2.0	257	95	1	934	22	15	21	40	1.91
46902746--46902908	50	3.3	50	84	1	202	37	22	13	26	1.91
46902828--46902908	25	3.2	25	72	6	83	33	22	17	27	1.96
46906393--46906444	24	2.2	24	92	0	86	38	13	34	13	1.84
46912903--46912991	23	3.9	23	81	0	88	47	25	14	12	1.79
46919637--46919771	25	5.4	24	77	7	101	36	23	16	23	1.94
46931319--46931343	3	8.3	3	100	0	50	0	32	0	68	0.90
46936154--46936196	14	3.3	13	78	12	52	74	9	13	2	1.16
46937441--46937706	132	2.0	133	99	0	525	26	15	9	47	1.77
46940487--46940530	18	2.4	18	80	3	52	52	11	9	27	1.67
46940702--46940743	21	2.0	21	100	0	84	19	0	19	61	1.34
46945524--46945562	18	2.2	18	95	0	69	12	5	10	71	1.28
46945529--46945574	18	2.5	19	82	10	60	13	6	6	73	1.22
46948061--46948120	30	2.0	30	87	3	86	10	30	33	26	1.89
46957859--46957933	23	3.3	23	81	3	82	41	21	18	18	1.91
46958253--46958302	25	2.0	25	84	11	66	36	22	0	42	1.54
46958674--46958698	11	2.3	11	100	0	50	28	20	0	52	1.47
46958912--46958943	5	6.6	5	96	3	57	0	18	0	81	0.70
46962762--46962816	22	2.5	21	91	2	83	52	23	5	18	1.65
46964967--46965369	43	9.4	43	98	0	727	25	34	19	21	1.96
46965535--46965588	21	2.6	21	87	0	81	7	46	14	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46965556--46965753	87	2.3	87	83	5	231	12	29	18	40	1.86
46969040--46969093	26	2.1	26	96	0	99	37	22	18	22	1.95
46969617--46972380	74	37.4	74	99	0	5512	33	20	17	28	1.95
46972834--46973081	41	6.0	41	85	5	313	33	23	24	18	1.97
46972836--46973081	123	2.0	124	86	5	347	32	23	24	19	1.97
46973277--46973301	12	2.1	12	100	0	50	32	36	24	8	1.84
46978286--46978550	41	6.5	41	81	6	281	32	23	24	18	1.97
46978304--46978536	123	1.9	122	84	4	317	33	25	24	16	1.96
46978666--46978796	42	3.2	40	85	8	131	17	24	22	35	1.95
46978716--46978800	42	2.0	43	97	2	163	18	23	21	36	1.95
46978788--46978812	12	2.1	12	100	0	50	32	36	24	8	1.84
47002773--47002855	29	2.9	29	90	0	130	34	25	10	28	1.90
47008711--47008804	49	1.9	49	91	0	152	24	25	7	42	1.80
47011341--47011381	16	2.4	17	88	8	57	24	7	2	65	1.30
47011462--47011713	43	5.9	43	89	2	364	31	30	17	20	1.96
47012357--47012423	23	2.9	23	82	12	84	34	22	5	37	1.79
47012358--47013167	46	17.5	45	71	12	380	40	23	5	30	1.76
47012463--47012605	23	6.3	23	71	15	91	38	25	4	30	1.77
47012387--47012722	91	3.6	91	90	4	485	39	25	5	29	1.77
47012360--47012629	23	11.8	23	70	11	83	39	25	4	30	1.75
47012569--47012765	101	2.0	101	84	4	263	40	23	5	30	1.76
47012358--47013041	160	4.2	160	79	9	772	39	23	5	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47012655--47013164	137	3.7	137	83	5	527	40	22	5	30	1.76
47012358--47013164	160	5.0	160	77	9	710	40	23	5	30	1.77
47012652--47013167	23	22.6	23	75	8	394	40	23	5	30	1.76
47016091--47016168	41	1.9	40	89	2	120	30	29	17	21	1.97
47016230--47016329	40	2.5	40	82	4	123	17	26	24	33	1.96
47017607--47017644	2	19.0	2	88	0	58	50	5	0	44	1.24
47024185--47024222	19	2.0	19	85	10	51	26	2	13	57	1.49
47024926--47024988	33	1.9	33	87	12	94	65	0	4	30	1.13
47024926--47024996	35	2.1	33	84	12	90	63	0	5	30	1.17
47026835--47026859	7	3.6	7	100	0	50	0	12	0	88	0.53
47027753--47027792	19	2.1	19	100	0	80	37	5	10	47	1.59
47029110--47029552	125	3.5	125	89	0	681	32	18	19	28	1.96
47032407--47032457	16	2.8	19	67	27	56	37	0	11	50	1.39
47032373--47032567	102	1.9	102	95	0	354	37	7	9	45	1.65
47033189--47033230	18	2.3	18	87	0	57	45	7	28	19	1.76
47033877--47033909	7	4.7	7	100	0	66	57	15	0	27	1.38
47034076--47034116	21	2.0	21	85	9	57	58	7	0	34	1.26
47035114--47035167	22	2.5	22	80	19	69	46	1	29	22	1.62
47038992--47039031	20	2.0	20	85	0	53	47	2	10	40	1.50
47039413--47039476	32	2.0	32	100	0	128	43	9	12	34	1.75
47045912--47045952	20	2.0	20	85	0	55	26	21	17	34	1.95
47046841--47046894	21	2.7	20	82	5	65	38	16	16	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47063697--47063858	50	3.2	50	70	8	148	22	18	23	35	1.96
47064045--47064445	44	8.7	44	69	18	208	28	21	18	31	1.97
47063905--47064415	142	3.6	142	93	0	826	27	21	18	32	1.97
47072998--47073045	19	2.5	19	83	9	62	43	10	20	25	1.83
47076805--47076846	12	3.4	12	81	15	50	59	0	9	30	1.29
47079903--47079942	19	2.1	19	85	0	53	72	12	0	15	1.12
47085690--47085722	17	1.9	17	93	0	57	51	6	27	15	1.66
47086223--47086286	26	2.5	26	81	0	83	26	14	26	32	1.94
47100300--47100330	15	2.1	15	93	0	53	48	35	0	16	1.46
47101065--47101132	26	2.6	26	83	4	75	30	22	23	23	1.99
47101545--47101577	17	1.9	17	88	11	50	36	9	6	48	1.60
47102674--47102713	13	2.8	14	88	11	55	5	30	5	60	1.40
47105190--47105223	18	1.9	18	88	5	52	38	0	17	44	1.49
47105287--47105341	5	11.0	5	100	0	110	20	0	20	60	1.37
47105353--47105379	13	2.1	13	100	0	54	29	22	0	48	1.51
47110741--47110780	18	2.2	18	86	8	55	25	0	7	67	1.16
47116645--47116683	3	13.0	3	88	0	60	64	2	0	33	1.08
47117212--47117256	21	2.1	22	91	4	74	55	2	4	37	1.32
47121237--47121295	29	2.0	31	83	6	77	20	38	0	40	1.53
47124477--47124772	147	2.0	147	99	0	583	25	14	16	43	1.86
47127377--47127531	86	1.8	84	86	6	224	35	23	14	26	1.93
47128726--47128755	15	2.0	15	93	0	51	50	0	10	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47128750--47128791	18	2.4	17	84	15	50	35	0	7	57	1.26
47132709--47132775	4	16.0	4	75	20	50	23	2	0	73	0.97
47132704--47132772	22	3.1	21	76	14	68	23	2	0	73	0.96
47132702--47132776	17	4.5	17	72	22	61	25	2	0	72	0.98
47132709--47132783	26	3.0	26	86	5	102	24	4	0	72	1.02
47132930--47132989	22	2.8	21	82	5	57	25	46	10	18	1.79
47133925--47134113	101	1.8	101	85	5	263	28	15	24	30	1.96
47134718--47134752	15	2.4	15	90	4	54	48	0	8	42	1.33
47134756--47134788	18	1.9	17	88	11	50	30	0	12	57	1.35
47139610--47139810	68	3.1	63	76	17	187	40	4	4	50	1.43
47145490--47145516	6	4.5	6	100	0	54	44	0	0	55	0.99
47151882--47151928	19	2.6	18	83	6	58	48	2	2	46	1.25
47152479--47152569	31	2.9	31	86	3	112	39	8	12	39	1.74
47153754--47153778	13	1.9	13	100	0	50	32	0	4	64	1.12
47157455--47157518	31	2.1	31	84	0	83	42	9	9	39	1.70
47167064--47167104	13	3.1	14	75	10	50	51	17	12	19	1.76
47167530--47167572	18	2.4	18	84	3	52	18	34	27	18	1.95
47172374--47172421	22	2.2	22	85	7	62	29	18	18	33	1.95
47176453--47176700	123	2.0	123	95	0	442	27	16	14	41	1.87
47180625--47180661	7	5.1	7	96	3	65	83	0	2	13	0.74
47181402--47181933	131	4.1	131	89	2	813	25	24	19	29	1.99
47181402--47181932	260	2.0	261	90	2	843	25	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47181734--47181930	44	4.5	44	66	14	120	24	24	21	29	1.99
47202486--47202581	22	4.4	22	85	5	124	27	31	0	41	1.56
47203744--47203769	7	3.7	7	100	0	52	26	0	15	57	1.38
47204428--47204463	18	2.0	18	94	0	63	22	30	5	41	1.76
47204956--47205420	29	16.1	28	84	6	553	45	29	1	23	1.60
47204956--47205420	58	8.1	58	88	4	674	45	29	1	23	1.60
47204956--47205420	87	5.4	87	84	4	618	45	29	1	23	1.60
47205417--47205700	37	7.7	37	95	0	505	39	12	1	46	1.50
47208543--47208919	125	3.0	124	92	1	612	34	23	14	28	1.93
47210763--47210843	33	2.5	32	92	5	137	40	9	13	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135