genome.fa.s8.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  133  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47701240--47701355	54	2.1	54	88	3	171	38	23	18	18	1.93
47701233--47701366	27	5.0	26	83	6	126	36	23	19	20	1.95
47701240--47701357	27	4.4	27	85	8	152	38	22	19	19	1.94
47707361--47707517	27	5.8	27	87	0	197	36	18	23	21	1.95
47707361--47707544	54	3.4	53	81	3	197	38	19	22	20	1.94
47707361--47707561	81	2.5	81	85	3	262	38	18	21	20	1.93
47707386--47707561	27	6.5	26	83	5	181	39	20	21	18	1.93
47707736--47707811	26	2.9	26	90	0	107	15	21	23	39	1.92
47707923--47707977	28	2.0	28	92	0	92	23	27	25	23	2.00
47721925--47722084	79	2.0	79	97	0	302	25	27	15	32	1.95
47723405--47723450	24	1.9	24	100	0	92	39	13	30	17	1.87
47731285--47731320	18	2.1	17	89	5	54	5	2	13	77	1.05
47734105--47734131	13	2.1	13	100	0	54	7	14	7	70	1.32
47741083--47741353	135	2.0	136	99	0	535	40	6	8	44	1.60
47741319--47741348	10	3.0	10	90	0	51	53	0	0	46	1.00
47749110--47749142	14	2.3	15	89	5	50	78	6	3	12	1.04
47749104--47749146	15	2.9	15	82	10	52	79	6	2	11	1.02
47756839--47758174	510	2.6	509	91	2	2140	32	26	14	26	1.95
47758321--47758364	10	4.4	10	82	8	54	81	9	0	9	0.87
47762608--47762644	15	2.5	15	86	0	56	43	29	0	27	1.55
47763254--47763301	20	2.5	20	83	10	55	58	4	0	37	1.18
47764390--47764428	18	2.1	19	85	4	53	25	0	5	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47764849--47764888	20	2.0	20	90	0	62	47	2	7	42	1.45
47765448--47765503	28	2.0	28	96	0	103	53	5	10	30	1.58
47766184--47766230	11	4.2	11	86	13	60	21	36	2	40	1.65
47766184--47766248	22	2.9	22	78	15	71	24	33	1	40	1.65
47766183--47766248	11	5.9	11	78	16	57	24	33	1	40	1.64
47768298--47768337	18	2.2	18	86	0	53	17	30	7	45	1.76
47768579--47768625	21	2.2	21	88	0	67	36	36	23	4	1.75
47768593--47768641	21	2.3	21	86	6	64	34	38	26	0	1.57
47768899--47769825	43	21.5	43	83	6	1059	45	29	0	24	1.56
47768899--47769825	65	14.3	65	83	6	1082	45	29	0	24	1.56
47768899--47769825	22	43.0	21	81	8	994	45	29	0	24	1.56
47769628--47769661	15	2.3	15	89	0	50	41	29	0	29	1.57
47773179--47773795	125	4.9	125	86	3	857	29	22	16	31	1.96
47773179--47773748	126	4.6	125	87	3	853	30	21	16	31	1.96
47775817--47775874	29	1.9	30	89	6	91	65	0	1	32	1.03
47775840--47775869	11	2.6	11	94	5	51	60	0	3	36	1.14
47776942--47777057	59	2.0	59	87	0	169	17	20	18	43	1.89
47778034--47778071	19	2.0	19	94	0	67	55	0	21	23	1.44
47781755--47781821	33	2.0	33	88	0	98	38	31	13	16	1.87
47783051--47783088	19	2.0	19	94	0	67	55	0	21	23	1.44
47784560--47784607	24	2.0	25	83	4	62	68	6	6	18	1.32
47785071--47785128	26	2.1	28	84	6	75	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47796464--47796506	18	2.3	18	84	4	50	62	4	2	30	1.28
47798047--47798728	44	15.7	43	69	16	304	28	23	19	29	1.98
47798047--47798728	217	3.1	217	93	0	1125	28	23	19	29	1.98
47810961--47811008	23	2.1	23	84	0	60	66	6	2	25	1.26
47810998--47811043	24	2.0	23	82	4	56	69	6	2	21	1.22
47813443--47813823	193	2.0	193	90	0	600	35	22	7	34	1.83
47815809--47815859	2	25.5	2	100	0	102	0	0	49	50	1.00
47816570--47816608	19	1.9	20	85	15	53	41	5	20	33	1.74
47825091--47825157	31	2.2	31	88	0	98	49	7	14	28	1.71
47829951--47829980	15	2.0	15	93	0	51	36	3	0	60	1.14
47831398--47831431	2	17.0	2	93	0	59	47	0	2	50	1.16
47839179--47839211	9	3.7	9	100	0	66	9	24	0	66	1.20
47842757--47842801	23	1.9	23	81	4	54	71	6	17	4	1.25
47854411--47854452	20	2.1	20	86	8	59	35	4	19	40	1.72
47856932--47856966	10	3.3	10	88	11	52	11	2	0	85	0.69
47860877--47860927	23	2.2	23	96	0	93	37	21	11	29	1.89
47861020--47861090	11	6.4	11	72	13	56	83	7	4	5	0.92
47862514--47862674	87	1.8	86	80	10	193	27	20	25	26	1.99
47862455--47862806	131	2.7	131	92	0	562	29	20	24	25	1.99
47862818--47863205	42	9.1	43	81	10	189	36	24	17	22	1.95
47862934--47863188	84	3.0	85	91	2	349	35	25	17	21	1.95
47862986--47863188	42	4.8	42	99	0	397	35	25	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47868150--47868278	66	2.0	66	92	3	215	24	21	20	32	1.98
47869856--47869892	19	2.0	19	89	5	58	45	0	2	51	1.15
47870242--47870276	11	3.3	11	84	8	54	34	0	0	65	0.93
47870233--47870275	21	2.1	20	91	4	68	27	2	0	69	1.00
47870242--47870283	21	2.0	21	85	0	57	35	0	0	64	0.94
47873986--47874069	43	2.0	43	92	0	141	29	16	14	39	1.88
47874793--47874847	27	2.0	27	96	0	101	34	21	16	27	1.95
47878051--47878185	66	2.0	66	87	2	191	11	24	20	43	1.85
47884718--47884760	21	2.1	21	86	4	61	27	6	0	65	1.18
47885643--47885692	20	2.6	19	84	12	66	34	2	34	30	1.69
47885655--47885697	20	2.2	20	91	0	68	30	0	34	34	1.58
47885786--47885875	41	2.2	40	82	5	110	16	28	18	35	1.93
47886080--47886120	12	3.4	12	93	0	64	34	36	26	2	1.70
47886158--47886401	129	1.9	128	90	4	393	27	29	18	24	1.98
47886139--47886408	43	6.3	43	85	4	352	26	28	18	26	1.98
47887853--47888168	158	2.0	158	99	0	623	33	18	19	29	1.95
47891006--47891057	22	2.4	21	80	3	59	36	40	1	21	1.64
47891531--47891811	41	6.9	41	85	1	323	32	29	21	16	1.95
47891883--47891973	39	2.3	40	83	5	105	23	24	19	32	1.97
47891897--47891973	40	2.0	38	84	5	100	27	24	18	29	1.98
47896350--47896375	2	13.0	2	100	0	52	50	0	0	50	1.00
47896948--47896974	7	3.9	7	100	0	54	0	14	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47898421--47898465	23	2.0	23	91	4	74	37	4	17	40	1.70
47898431--47898475	23	2.0	23	86	4	65	33	4	15	46	1.66
47898905--47898947	3	14.3	3	85	9	61	32	0	0	67	0.91
47898889--47898946	15	3.7	15	76	13	55	31	0	1	67	1.01
47905046--47905534	88	5.6	88	88	0	656	27	27	24	21	1.99
47905534--47905953	44	9.7	44	83	4	496	28	18	24	27	1.98
47905574--47905907	170	2.0	170	86	1	472	29	18	24	27	1.98
47905534--47905947	214	1.9	214	86	2	591	28	19	24	27	1.98
47906253--47906414	44	3.8	44	73	9	120	29	20	22	27	1.99
47906788--47906841	19	2.8	19	97	0	99	37	9	16	37	1.81
47906801--47906864	19	3.0	22	86	8	80	37	6	17	39	1.75
47906830--47906875	23	2.0	23	87	4	67	32	4	15	47	1.65
47907043--47907081	19	2.0	21	85	10	55	15	10	5	69	1.34
47907305--47907344	3	13.3	3	89	10	64	35	0	0	65	0.93
47907305--47907345	13	3.0	14	86	13	59	36	0	0	63	0.95
47912549--47912594	16	2.9	16	81	9	58	36	0	4	58	1.18
47916555--47916588	14	2.4	14	90	5	50	11	2	0	85	0.71
47917166--47917248	3	27.0	3	72	18	64	31	3	3	61	1.30
47917166--47917227	13	4.5	13	76	11	61	30	4	1	62	1.25
47918739--47918800	31	2.0	31	83	0	79	37	6	6	50	1.54
47924103--47924166	11	5.7	11	79	1	65	23	26	1	48	1.60
47924117--47924166	22	2.3	22	89	0	73	24	28	2	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47926543--47926595	26	2.0	25	86	13	72	47	0	0	52	1.00
47926555--47926595	7	6.0	7	86	13	59	46	0	0	53	1.00
47926657--47926697	7	6.0	7	86	13	59	46	0	0	53	1.00
47926645--47926697	26	2.0	25	86	13	72	47	0	0	52	1.00
47926526--47926931	102	4.0	102	98	0	760	47	15	1	35	1.54
47926759--47926799	7	6.0	7	86	13	59	46	0	0	53	1.00
47926747--47926799	26	2.0	25	86	13	72	47	0	0	52	1.00
47926932--47927005	22	3.4	22	89	9	116	44	32	0	22	1.53
47926932--47927005	21	3.4	21	92	5	121	44	32	0	22	1.53
47927036--47927161	58	2.2	59	91	2	202	41	10	10	38	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135