genome.fa.s8.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  41  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16107155--16107185	2	16.0	2	93	6	55	51	0	0	48	1.00
16110702--16110737	18	1.9	19	88	5	56	25	0	27	47	1.52
16110937--16110978	22	1.9	22	90	0	66	21	19	23	35	1.96
16114971--16115005	7	4.9	7	89	3	52	40	42	0	17	1.49
16119647--16119721	39	1.9	39	86	0	105	16	17	29	37	1.91
16120250--16120281	15	2.0	17	88	11	50	46	0	31	21	1.52
16125127--16125406	124	2.3	124	94	1	499	29	15	21	33	1.94
16127298--16127455	56	2.8	56	93	0	280	42	10	10	36	1.74
16127474--16128547	36	32.3	36	84	14	1149	27	0	28	44	1.56
16127985--16128546	29	18.6	29	83	11	695	26	0	26	46	1.53
16130615--16130665	22	2.3	21	90	9	84	35	0	35	29	1.58
16130614--16130716	52	2.0	52	96	0	188	35	0	33	31	1.58
16130637--16130695	30	2.0	30	96	0	109	35	0	35	28	1.58
16130667--16130716	22	2.3	22	92	0	82	38	0	32	30	1.58
16135577--16135613	19	1.9	19	88	0	56	72	5	2	18	1.15
16136287--16136360	30	2.6	28	81	8	80	45	0	4	50	1.20
16142290--16142350	19	3.3	19	71	17	65	52	1	37	8	1.41
16142293--16142366	36	2.1	36	92	0	121	51	2	37	8	1.46
16144082--16144275	50	3.9	50	79	4	196	28	21	27	22	1.99
16148550--16148597	5	9.6	5	91	8	80	81	0	0	18	0.70
16148550--16148590	14	2.9	14	96	3	73	80	0	0	19	0.71
16148548--16148597	24	2.0	25	96	3	93	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16153513--16153559	20	2.2	21	82	14	53	46	0	27	25	1.53
16158917--16158990	38	1.9	38	91	0	121	28	16	21	33	1.95
16161127--16161317	50	3.7	50	79	8	190	27	20	28	23	1.99
16161128--16161366	49	4.7	50	80	6	216	28	20	27	23	1.99
16161566--16161604	12	3.2	12	85	0	51	51	5	23	20	1.67
16161567--16161609	20	2.2	20	91	0	68	53	6	23	16	1.67
16167479--16167822	50	6.8	50	87	3	465	24	30	18	25	1.98
16174651--16174690	19	2.1	19	85	0	53	62	2	0	35	1.09
16174685--16174713	11	2.6	11	100	0	58	51	0	0	48	1.00
16182996--16183047	26	2.0	26	96	0	95	38	7	17	36	1.78
16184231--16184417	92	2.0	93	93	1	322	43	6	17	32	1.74
16184758--16184914	81	1.9	81	90	0	251	35	13	24	26	1.93
16184981--16185147	50	3.4	50	80	5	144	28	22	26	21	1.99
16207122--16207153	13	2.5	13	94	0	55	56	12	0	31	1.37
16210215--16210298	46	1.9	45	83	11	113	58	3	3	34	1.33
16210798--16210868	32	2.2	32	90	2	108	38	40	9	11	1.74
16214082--16214118	9	4.1	9	92	0	65	45	13	10	29	1.77
16214851--16214876	5	5.2	5	100	0	52	19	19	19	42	1.90
16219684--16219716	7	4.7	7	85	14	50	84	0	3	12	0.72
16224101--16224168	29	2.3	29	100	0	136	26	0	20	52	1.46
16238517--16238543	14	1.9	14	100	0	54	55	7	7	29	1.55
16238958--16239004	24	2.0	24	82	0	58	17	19	31	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16240612--16240774	79	2.0	80	98	1	319	71	1	9	17	1.20
16243687--16244050	27	13.5	27	83	4	373	44	18	20	17	1.87
16250226--16250250	11	2.3	11	100	0	50	28	0	32	40	1.57
16251262--16251711	27	16.7	27	84	5	457	43	18	19	18	1.88
16252000--16252091	28	3.3	28	86	3	123	23	22	21	31	1.98
16252016--16252100	28	3.0	27	80	10	82	23	21	21	34	1.97
16260320--16260475	75	2.1	75	97	1	296	21	3	28	45	1.69
16261983--16262056	16	4.6	16	84	5	96	41	5	22	29	1.76
16262036--16262128	44	2.1	45	88	6	136	33	3	24	38	1.72
16268109--16268151	22	2.0	22	90	0	68	11	20	25	41	1.86
16268243--16268557	43	7.3	43	88	2	350	30	30	18	20	1.96
16275004--16275136	22	6.4	21	68	22	84	35	0	16	47	1.52
16275010--16275104	9	10.6	9	73	17	81	33	1	18	46	1.57
16275010--16275104	16	5.3	18	74	15	81	33	1	18	46	1.57
16275038--16275132	38	2.4	38	91	3	145	33	1	18	46	1.57
16275226--16275265	21	1.9	21	85	10	55	50	2	5	42	1.37
16275129--16275323	69	2.8	69	83	6	220	43	5	7	44	1.55
16276900--16276945	24	2.0	22	91	8	74	23	0	41	34	1.55
16278953--16279108	41	3.8	40	73	9	127	38	25	16	19	1.92
16278936--16279050	41	2.8	42	77	7	112	37	26	15	20	1.92
16281912--16281945	18	1.9	18	88	5	52	50	0	0	50	1.00
16295507--16295544	16	2.4	16	90	0	58	21	2	2	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295502--16295556	28	2.1	25	86	10	74	21	3	1	72	1.09
16296213--16296298	14	6.0	14	68	18	52	24	2	3	69	1.15
16296217--16296322	12	8.8	12	69	18	53	24	1	5	67	1.22
16296217--16296271	26	2.2	25	87	9	76	23	0	5	70	1.07
16296214--16296252	9	4.6	8	81	12	51	25	0	2	71	0.98
16296443--16296482	16	2.4	16	87	4	53	12	2	17	67	1.33
16297967--16298033	35	1.9	35	82	11	84	14	10	4	70	1.31
16298704--16298773	35	2.0	35	97	0	131	28	27	8	35	1.86
16305014--16305099	18	4.6	18	70	12	75	23	20	1	54	1.51
16305006--16305128	56	2.2	56	91	1	194	21	21	0	55	1.49
16313323--16313349	11	2.5	11	100	0	54	44	0	18	37	1.50
16317336--16317399	18	3.4	18	68	16	58	15	12	15	56	1.68
16317999--16318183	101	1.8	102	89	3	293	22	17	28	31	1.97
16317996--16318190	51	3.9	49	80	4	212	22	17	28	30	1.97
16318409--16318440	16	2.0	16	93	0	55	59	0	15	25	1.36
16322219--16322266	19	2.4	21	76	13	57	35	25	8	31	1.85
16336674--16336738	3	21.0	3	75	12	60	32	1	6	60	1.31
16337953--16338005	23	2.3	23	100	0	106	28	3	15	52	1.59
16352873--16352918	22	2.1	22	100	0	92	52	4	26	17	1.63
16357736--16357907	42	4.1	42	86	4	231	21	16	25	36	1.94
16364385--16364472	30	2.9	30	86	0	131	22	39	26	11	1.88
16371889--16371961	6	13.6	5	75	17	51	19	2	2	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16371917--16371955	20	1.9	21	85	15	55	17	2	0	79	0.84
16371889--16371960	26	2.6	27	81	14	69	18	2	2	76	1.03
16371895--16371946	17	3.1	16	86	5	68	17	3	1	76	1.02
16373789--16373846	30	1.9	30	89	0	89	18	36	31	13	1.90
16385095--16385294	50	3.9	50	78	7	197	25	20	30	24	1.99
16391923--16391966	16	2.8	16	96	3	81	75	0	6	18	1.02
16398344--16398382	20	2.0	20	85	10	53	35	2	0	61	1.10
16402469--16402523	25	2.2	25	87	3	76	36	1	0	61	1.06
16403297--16403339	18	2.4	18	88	3	61	46	0	4	48	1.22
16405230--16405379	62	2.4	62	95	0	264	20	22	31	26	1.98
16410186--16410302	47	2.5	47	84	6	141	23	15	16	45	1.85
16410196--16410303	23	4.7	23	77	8	112	22	15	15	46	1.84
16410297--16410322	13	2.0	13	100	0	52	23	7	23	46	1.78
16410310--16410488	70	2.6	70	91	2	281	26	12	19	41	1.86
16410326--16410452	23	5.5	22	76	7	119	25	14	18	40	1.89
16414937--16415165	126	1.8	126	85	0	323	24	16	30	29	1.96
16414938--16415169	63	3.7	63	81	3	261	24	17	29	29	1.97
16416518--16416623	37	2.9	37	85	2	142	39	18	14	27	1.89
16416507--16416636	37	3.5	37	80	6	138	37	18	12	31	1.88
16418226--16418280	25	2.2	25	87	3	76	14	27	23	34	1.94
16420845--16420915	33	2.2	33	100	0	142	40	11	19	28	1.86
16424336--16424392	24	2.3	24	82	8	62	22	24	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16424347--16424412	25	2.7	24	76	6	62	21	24	19	34	1.96
16426065--16426095	10	3.1	10	100	0	62	41	0	19	38	1.51
16426322--16426385	32	2.0	32	96	0	119	18	18	17	45	1.86
16426654--16426735	43	1.9	43	92	0	137	21	31	29	17	1.96
16430300--16430325	5	5.2	5	100	0	52	61	0	0	38	0.96
16435325--16435504	57	3.2	57	78	6	152	32	10	17	39	1.84
16435502--16436233	71	10.4	71	79	1	594	27	17	22	33	1.96
16435550--16436305	213	3.6	210	77	6	693	26	17	21	34	1.96
16445179--16445232	29	1.9	29	85	7	76	48	3	9	38	1.53
16453328--16453353	5	5.2	5	100	0	52	80	0	0	19	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135