genome.fa.s8.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  90  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34259673--34259750	19	4.2	19	71	15	63	42	3	11	42	1.59
34259688--34259732	20	2.3	20	88	3	65	44	4	8	42	1.56
34259610--34259865	56	4.8	57	78	10	204	45	10	12	32	1.75
34259746--34259789	21	2.2	20	87	4	61	40	9	11	38	1.73
34260173--34260197	5	5.0	5	100	0	50	80	0	0	20	0.72
34260375--34260399	7	3.6	7	100	0	50	0	12	0	88	0.53
34260368--34260409	18	2.3	18	88	8	59	0	16	0	83	0.65
34260365--34260422	11	5.4	11	73	17	50	0	20	0	79	0.74
34260440--34260537	24	4.3	24	80	13	118	2	30	43	23	1.65
34260440--34260537	48	2.2	42	87	10	133	2	30	43	23	1.65
34260550--34260592	18	2.3	20	84	11	56	0	13	6	79	0.93
34260554--34260592	20	2.0	20	85	10	53	0	12	5	82	0.83
34260715--34260783	17	3.9	17	75	14	68	1	24	0	73	0.91
34260715--34260794	13	5.9	14	75	17	71	1	26	0	72	0.92
34260714--34260792	20	4.0	20	76	11	74	1	25	0	73	0.91
34261756--34261801	12	3.9	12	78	21	53	0	30	0	69	0.89
34262150--34262318	30	5.7	30	80	2	171	37	5	23	32	1.79
34262601--34262783	76	2.4	77	85	1	260	33	22	16	27	1.96
34263001--34263266	77	3.5	77	91	4	421	34	18	16	30	1.93
34279331--34279706	17	21.4	16	70	15	171	44	10	13	32	1.77
34279504--34279603	20	5.3	19	75	10	89	43	9	12	36	1.73
34279506--34279628	56	2.2	55	87	4	176	43	10	13	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34279326--34279696	34	10.5	34	74	10	239	45	10	13	31	1.76
34279988--34280012	5	5.0	5	100	0	50	80	0	0	20	0.72
34280190--34280214	7	3.6	7	100	0	50	0	12	0	88	0.53
34280183--34280224	18	2.3	18	88	8	59	0	16	0	83	0.65
34280180--34280237	11	5.4	11	73	17	50	0	20	0	79	0.74
34280265--34280329	24	3.2	19	76	21	69	0	29	46	24	1.53
34280283--34280353	24	3.0	24	91	0	115	1	33	42	22	1.63
34280369--34280408	21	2.0	20	90	5	62	0	12	5	82	0.82
34280527--34280592	10	6.5	10	77	8	71	0	21	1	77	0.85
34280535--34280595	16	4.1	15	74	16	56	0	22	1	75	0.89
34280552--34280600	3	17.3	3	85	12	52	0	26	0	73	0.83
34280950--34281118	30	5.7	30	80	2	180	37	5	25	31	1.80
34280998--34281111	59	1.9	60	90	1	185	36	2	25	35	1.70
34281528--34282143	44	14.0	44	80	8	563	31	23	12	32	1.92
34281544--34282144	88	6.8	88	85	3	679	32	22	12	31	1.92
34281526--34282144	132	4.7	132	86	5	636	31	23	12	32	1.92
34283435--34283482	22	2.1	23	88	11	73	12	12	0	75	1.06
34288147--34288180	3	11.0	3	87	6	50	67	2	0	29	1.05
34290764--34290837	27	2.8	26	87	4	112	18	22	18	39	1.93
34294614--34294642	5	6.0	5	92	8	51	62	37	0	0	0.96
34296027--34296096	21	3.3	22	70	21	60	21	5	0	72	1.05
34300660--34301482	44	18.6	44	81	3	765	31	17	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34305581--34305659	3	25.3	3	72	10	52	30	6	2	60	1.35
34305580--34305652	30	2.4	29	80	15	78	28	8	2	60	1.40
34305707--34305760	27	2.0	27	96	0	99	18	27	33	20	1.96
34306309--34306350	16	2.5	17	76	11	50	38	2	0	59	1.10
34316684--34316717	4	8.5	4	87	12	52	73	0	23	2	0.97
34330667--34330712	19	2.3	20	78	10	51	65	4	2	28	1.23
34335464--34335608	69	2.1	71	88	6	215	40	13	11	34	1.80
34336971--34337153	50	3.7	50	84	0	222	21	28	22	26	1.99
34338551--34338655	41	2.6	41	79	0	102	31	22	16	29	1.96
34338737--34338877	75	1.9	74	80	5	167	43	19	4	32	1.70
34345929--34346082	69	2.2	71	86	5	206	42	16	10	31	1.81
34346396--34346540	75	1.9	75	80	5	168	44	17	4	34	1.68
34346795--34346838	2	22.0	2	80	0	52	50	9	0	40	1.34
34346796--34346836	6	6.8	6	88	0	64	51	9	0	39	1.35
34346795--34346842	12	3.8	12	94	5	78	50	10	0	39	1.37
34346796--34346843	18	2.7	18	90	0	69	50	12	0	37	1.41
34350070--34350105	17	2.1	17	100	0	72	33	11	5	50	1.61
34355887--34356054	36	4.6	36	97	0	309	52	4	5	37	1.45
34356031--34356080	20	2.9	16	85	11	55	56	0	8	36	1.29
34355887--34356080	72	2.7	71	91	4	255	53	4	6	36	1.45
34356071--34356129	26	2.3	26	77	19	61	50	8	3	37	1.49
34361639--34361695	3	19.0	3	100	0	114	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34366091--34366129	20	2.0	20	85	10	53	56	2	15	25	1.52
34367318--34367351	17	1.9	18	88	5	52	73	5	8	11	1.24
34369012--34369041	15	2.0	15	100	0	60	33	13	13	40	1.83
34370363--34370393	16	2.0	15	93	6	53	6	25	19	48	1.72
34370382--34371019	150	4.2	151	85	9	850	30	10	7	51	1.63
34370378--34371019	305	2.1	304	88	5	967	29	10	7	51	1.65
34370884--34371125	117	2.1	116	88	6	355	29	9	8	52	1.64
34371004--34371308	154	2.0	158	85	5	426	29	12	8	49	1.69
34370743--34371292	269	2.0	272	91	2	901	29	10	8	51	1.66
34374046--34374082	15	2.2	17	86	13	51	59	2	10	27	1.44
34374046--34374083	16	2.2	18	86	9	53	60	2	10	26	1.43
34374046--34374084	17	2.2	18	86	4	53	61	2	10	25	1.41
34379195--34379340	61	2.4	60	75	6	141	41	16	4	38	1.67
34380480--34380692	107	2.0	107	85	3	286	31	22	15	30	1.95
34391353--34391401	15	3.5	15	83	16	77	34	10	8	46	1.67
34391348--34391421	20	3.3	20	72	22	58	32	8	8	51	1.61
34391363--34391402	12	3.1	12	80	19	53	35	10	7	47	1.65
34395973--34396113	63	2.3	62	83	6	169	26	28	19	24	1.99
34397396--34397580	91	2.0	91	98	0	361	40	15	5	38	1.72
34400711--34400763	27	2.0	27	81	7	63	67	3	18	9	1.33
34400993--34401036	19	2.4	18	82	14	54	50	2	2	45	1.27
34401804--34401837	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34406692--34406725	11	3.0	11	91	4	50	58	11	0	29	1.33
34409138--34409171	11	3.0	11	91	4	50	58	11	0	29	1.33
34415484--34415541	16	3.7	16	75	11	57	48	0	1	50	1.11
34415596--34415630	17	2.1	17	88	0	52	60	0	0	40	0.97
34423563--34423605	20	2.2	20	82	0	50	32	2	9	55	1.44
34433127--34433170	22	2.0	22	82	8	54	34	15	15	34	1.90
34436196--34436236	14	2.7	15	85	7	57	21	2	2	73	1.07
34451732--34451771	20	2.0	20	100	0	80	30	10	10	50	1.69
34451876--34451986	54	2.1	54	98	0	213	38	10	5	45	1.62
34463061--34463093	6	5.5	6	100	0	66	15	0	0	84	0.61
34464299--34464513	107	2.0	108	99	0	423	41	5	11	41	1.64
34467572--34467730	82	2.0	82	82	7	200	34	18	13	32	1.91
34470989--34471476	244	2.0	244	98	0	949	35	12	19	32	1.89
34476435--34476705	131	2.1	133	97	1	510	43	18	15	23	1.88
34477586--34478395	403	2.0	404	99	0	1613	45	9	18	26	1.80
34484766--34484818	26	2.0	26	100	0	106	41	15	11	32	1.82
34488767--34488830	21	3.0	21	75	11	67	26	17	18	37	1.93
34489390--34489454	33	2.0	33	100	0	130	21	21	21	35	1.96
34492390--34492486	7	14.0	7	74	10	83	49	9	1	40	1.42
34492410--34492484	21	3.6	21	88	0	105	50	8	1	40	1.40
34494307--34494336	9	3.3	9	90	0	51	30	0	13	56	1.37
34494479--34494637	79	2.0	80	98	1	311	38	13	5	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34498612--34498668	29	2.0	29	89	0	87	66	3	0	29	1.08
34502106--34502179	28	2.7	27	87	6	105	43	9	1	45	1.44
34502165--34502202	17	2.2	18	90	4	60	71	15	0	13	1.16
34502253--34502313	27	2.3	27	91	0	95	26	27	29	16	1.97
34507616--34507655	18	2.2	18	86	4	53	12	0	17	70	1.18
34507644--34507715	28	2.6	29	82	4	94	48	1	9	40	1.45
34512532--34512619	39	2.2	40	84	6	108	35	5	19	39	1.75
34512820--34512926	46	2.4	45	87	4	153	21	18	17	42	1.90
34512906--34512954	6	7.8	6	86	2	62	18	18	14	48	1.80
34517962--34517993	16	1.9	17	93	6	57	50	0	9	40	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135