genome.fa.s8.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  124  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44828085--44828697	94	6.6	94	79	5	586	32	18	20	28	1.96
44828085--44828826	44	16.1	44	71	13	384	31	18	20	29	1.96
44828574--44829237	94	7.1	94	80	5	604	31	18	20	29	1.96
44830755--44830796	12	3.2	12	84	15	57	21	2	2	73	1.06
44830896--44830946	25	2.0	25	92	0	84	29	5	7	56	1.51
44835144--44835776	316	2.0	317	99	0	1259	46	13	10	30	1.76
44837381--44837405	13	1.9	13	100	0	50	44	0	8	48	1.32
44842007--44842058	24	2.2	24	82	0	59	51	5	5	36	1.50
44843979--44844030	24	2.2	24	89	0	77	53	7	3	34	1.48
44845659--44845714	22	2.7	20	73	24	53	32	8	8	50	1.65
44846700--44846753	17	3.3	17	79	10	76	59	0	3	37	1.15
44846703--44846772	13	4.8	13	70	21	50	62	1	2	32	1.18
44846707--44846770	15	4.2	15	79	13	69	64	1	3	31	1.19
44846732--44846770	14	2.9	14	84	3	53	64	2	2	30	1.21
44847705--44847759	27	2.1	26	80	16	60	20	14	5	60	1.54
44847720--44847761	13	3.2	13	86	0	57	19	11	7	61	1.52
44847720--44847822	12	8.3	12	72	10	73	24	14	8	52	1.70
44847739--44847822	25	3.4	24	77	9	80	27	14	9	48	1.74
44862609--44862634	12	2.2	12	100	0	52	23	15	0	61	1.33
44865808--44865847	22	1.9	22	85	10	57	40	0	2	57	1.12
44865980--44866019	16	2.5	15	84	11	53	40	7	2	50	1.44
44865995--44866055	22	2.7	23	80	7	63	44	1	1	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44868331--44868390	4	14.0	4	84	10	50	20	0	10	70	1.16
44868338--44868369	5	6.8	5	96	3	50	21	0	12	65	1.25
44868338--44868389	13	3.9	13	78	14	61	19	0	9	71	1.13
44870312--44870343	10	3.2	10	100	0	64	37	31	0	31	1.58
44870393--44870549	42	3.7	42	76	0	116	43	14	23	19	1.87
44878584--44879570	37	26.7	37	98	0	1879	26	19	13	39	1.89
44885332--44885450	25	4.8	25	69	13	84	33	21	26	17	1.96
44895058--44895082	11	2.3	11	100	0	50	56	8	0	36	1.29
44895789--44895835	21	2.2	21	84	0	58	0	29	6	63	1.19
44895926--44897181	626	2.0	627	99	0	2505	36	11	11	40	1.78
44897321--44897461	70	2.0	71	98	1	275	32	8	5	53	1.55
44898318--44898359	20	2.2	19	83	12	50	61	0	4	33	1.17
44899614--44899647	18	1.9	18	88	5	52	70	8	5	14	1.31
44904144--44904209	34	1.9	34	87	6	98	37	3	1	57	1.23
44905352--44905679	48	7.0	48	80	4	294	32	17	21	28	1.96
44905747--44906053	34	9.1	34	70	13	195	39	15	15	29	1.89
44905723--44905965	68	3.6	67	79	8	224	38	15	15	30	1.89
44905783--44905981	102	2.0	102	87	6	287	39	16	14	30	1.88
44905813--44906038	68	3.3	68	80	6	224	39	15	15	28	1.89
44905747--44906034	102	2.8	102	81	4	280	38	15	15	29	1.89
44905738--44906068	68	4.9	68	77	6	217	38	16	14	30	1.88
44907921--44907967	17	2.8	17	80	6	60	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44907918--44907967	25	2.0	25	81	14	59	62	0	0	38	0.96
44908804--44909107	150	2.0	151	98	1	583	41	10	9	38	1.73
44916157--44916206	25	2.0	25	88	0	73	42	20	26	12	1.86
44923080--44923120	15	2.7	15	88	7	57	68	7	14	9	1.39
44923610--44923675	25	2.6	26	69	7	64	43	18	19	18	1.88
44932189--44932245	20	2.8	22	85	15	79	49	5	0	45	1.24
44934395--44934422	13	2.2	13	100	0	56	28	0	21	50	1.49
44936183--44936387	102	2.0	102	100	0	410	45	9	16	28	1.79
44936480--44936518	6	6.7	6	94	2	53	41	7	0	51	1.31
44936506--44936566	27	2.3	27	86	5	90	55	0	4	39	1.21
44936665--44936706	21	2.0	22	90	4	68	54	4	4	35	1.42
44936702--44936733	3	10.7	3	100	0	64	34	31	0	34	1.58
44937707--44937895	97	1.9	98	98	1	371	42	5	13	38	1.66
44946492--44946675	91	2.0	92	98	1	361	52	7	1	38	1.40
44949517--44949559	11	3.9	11	84	0	50	23	0	9	67	1.19
44955583--44955618	15	2.4	15	90	0	63	77	0	2	19	0.88
44955621--44955675	14	3.9	14	77	15	60	72	1	21	3	1.09
44955621--44955675	29	1.9	29	88	3	85	72	1	21	3	1.09
44956359--44956405	24	2.0	24	84	16	62	34	0	14	51	1.43
44961385--44961445	30	2.0	30	100	0	122	22	19	6	50	1.70
44962688--44962772	9	9.4	9	92	0	116	42	23	8	25	1.82
44964996--44965130	72	1.9	72	90	0	216	29	17	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44965227--44965256	15	2.0	15	100	0	60	33	13	40	13	1.83
44973216--44973251	18	2.0	18	94	0	63	19	5	0	75	1.00
44981061--44981090	3	10.0	3	92	0	51	30	3	0	66	1.07
44984455--44984517	21	3.1	21	68	13	60	19	26	1	52	1.55
44991655--44991692	19	2.0	19	100	0	76	52	15	0	31	1.43
44993235--44993274	21	1.9	21	85	10	55	65	5	0	30	1.14
45011816--45011891	27	2.8	27	75	0	80	19	27	17	35	1.94
45018678--45019215	285	1.9	286	92	1	918	36	11	12	38	1.81
45023140--45023183	21	2.1	21	82	0	52	18	29	27	25	1.98
45036689--45036806	37	3.1	37	67	19	89	30	15	2	51	1.56
45043890--45043938	22	2.3	20	77	16	53	48	2	2	46	1.25
45043902--45043960	25	2.5	22	78	19	66	50	1	0	47	1.11
45044461--45044496	18	2.0	18	89	10	56	22	19	2	55	1.56
45045048--45045097	26	1.9	26	88	8	75	44	0	28	28	1.55
45045203--45045514	61	5.1	61	98	0	581	50	4	8	37	1.53
45046554--45046589	16	2.2	16	100	0	72	25	0	36	38	1.56
45053293--45053335	17	2.5	17	96	0	77	48	18	11	20	1.79
45053799--45053837	20	2.0	20	84	0	51	33	5	17	43	1.72
45073145--45073266	41	3.1	41	61	17	105	22	15	32	29	1.95
45073129--45073279	76	2.0	75	98	1	293	21	17	31	29	1.96
45081381--45081483	42	2.5	42	88	0	161	35	19	19	25	1.95
45085477--45085519	22	2.0	22	90	0	68	18	13	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45085542--45085593	26	2.0	26	84	0	68	25	23	19	32	1.97
45086216--45086241	11	2.4	11	100	0	52	38	0	34	26	1.57
45088379--45088581	32	6.4	32	81	0	219	20	20	21	37	1.94
45088379--45088581	96	2.1	95	85	0	262	20	20	21	37	1.94
45088573--45088637	22	3.0	22	76	0	67	16	18	20	44	1.87
45088777--45088830	28	1.9	28	92	0	90	16	27	25	29	1.97
45090544--45090582	18	2.2	17	86	13	53	33	0	20	46	1.51
45090808--45090860	23	2.3	23	96	0	97	20	20	28	30	1.98
45094124--45094176	21	2.5	21	84	0	79	30	22	28	18	1.98
45094124--45094184	21	2.8	21	85	5	77	32	22	26	18	1.97
45096567--45096631	33	2.0	33	96	0	121	47	7	4	40	1.53
45096590--45096639	23	2.2	23	85	0	64	44	10	4	42	1.56
45096600--45096646	23	2.0	23	91	0	76	42	10	4	42	1.59
45097208--45097422	108	2.0	108	93	0	367	27	11	18	42	1.84
45099986--45100033	24	2.0	23	84	4	60	66	4	0	29	1.10
45100393--45100436	23	2.0	20	83	12	52	47	9	15	27	1.76
45100444--45100487	20	2.1	21	87	4	63	54	4	4	36	1.41
45102643--45102682	20	2.0	20	90	0	62	40	20	0	40	1.52
45110799--45111186	131	2.9	132	88	3	557	26	23	19	30	1.98
45111004--45111186	44	4.2	44	68	8	120	25	26	18	29	1.98
45110775--45111188	132	3.1	131	87	2	571	26	24	18	30	1.98
45111180--45111474	89	3.3	89	87	1	387	24	23	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45111312--45111453	45	3.2	45	68	16	123	23	24	23	28	2.00
45112007--45112365	45	8.0	45	73	9	232	25	24	18	30	1.98
45112043--45112363	134	2.4	134	81	7	359	26	23	18	31	1.98
45117227--45117291	22	3.0	23	86	8	100	43	16	23	16	1.88
45117231--45117453	25	9.4	25	79	11	213	37	16	24	21	1.93
45123896--45123944	25	2.0	25	95	0	89	48	22	18	10	1.77
45129026--45129062	17	2.2	18	85	9	51	72	5	8	13	1.24
45129032--45129085	23	2.4	23	85	11	69	72	5	7	14	1.26
45137098--45137165	17	4.1	15	74	17	64	79	4	2	13	1.00
45137255--45137350	15	6.3	15	71	9	70	69	3	5	21	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135