genome.fa.s8.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  55  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22351287--22351311	2	12.5	2	100	0	50	48	0	0	52	1.00
22370122--22372062	970	2.0	970	100	0	3882	35	19	10	34	1.87
22372108--22372177	36	1.9	36	100	0	140	38	11	2	47	1.55
22372591--22372642	15	3.4	14	75	17	50	1	21	3	73	1.10
22372583--22372673	6	14.8	6	76	16	53	5	20	2	71	1.17
22372630--22372670	12	3.4	12	93	0	64	9	17	0	73	1.09
22372630--22372673	18	2.4	18	88	0	70	9	15	0	75	1.05
22373182--22373325	75	1.9	75	81	5	175	22	23	24	29	1.99
22374042--22374138	30	3.2	30	92	2	151	22	23	32	20	1.98
22374065--22374119	17	3.5	17	69	19	55	21	25	32	20	1.97
22375026--22375071	15	3.1	15	84	9	58	28	0	4	67	1.10
22376061--22376092	16	2.0	17	88	11	50	37	6	0	56	1.25
22386619--22386652	2	17.0	2	100	0	68	50	0	0	50	1.00
22394012--22394055	6	7.3	6	100	0	88	0	0	63	36	0.95
22403491--22403526	18	1.9	18	88	5	54	22	0	25	52	1.47
22403647--22403693	19	2.6	18	82	3	58	53	0	2	44	1.12
22403633--22403692	19	3.1	18	76	11	57	53	0	1	45	1.10
22403960--22404008	22	2.3	21	86	6	71	65	4	0	30	1.11
22425151--22425175	2	12.5	2	100	0	50	52	0	0	48	1.00
22425110--22425299	95	2.0	95	98	0	371	38	7	7	45	1.61
22425246--22425270	2	12.5	2	100	0	50	52	0	0	48	1.00
22432633--22433279	322	2.0	322	99	0	1285	29	18	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22453286--22453315	13	2.2	14	94	5	53	20	3	6	70	1.25
22454827--22454866	16	2.3	19	87	12	59	10	2	17	70	1.27
22457984--22458136	51	3.0	51	100	0	306	21	27	19	31	1.97
22465321--22465457	68	2.0	69	92	1	231	37	10	3	47	1.56
22465347--22465479	68	2.0	66	81	8	153	40	9	3	46	1.53
22467412--22467449	15	2.6	15	91	4	60	5	5	23	65	1.34
22493164--22493193	15	2.0	15	100	0	60	53	6	0	40	1.27
22493444--22493503	27	2.2	27	78	0	66	26	16	38	18	1.92
22494416--22494550	28	4.8	27	73	14	94	54	29	0	15	1.47
22494801--22494845	7	6.4	7	84	0	54	48	26	0	24	1.51
22494789--22494839	21	2.3	22	86	6	68	47	25	0	27	1.53
22495380--22495484	41	2.6	41	84	0	147	18	26	17	38	1.92
22505485--22505523	19	2.1	19	90	0	60	38	12	17	30	1.88
22510804--22510833	8	3.6	8	95	4	51	40	0	0	60	0.97
22510893--22511071	89	2.0	90	98	1	351	40	9	5	44	1.60
22517625--22517786	78	2.1	79	97	2	310	29	11	9	50	1.70
22518744--22518785	20	2.1	20	95	0	75	52	16	4	26	1.63
22520149--22520191	19	2.3	18	88	8	59	34	0	2	62	1.08
22520149--22520184	19	1.9	18	94	5	63	36	0	0	63	0.94
22526991--22527027	2	18.5	2	100	0	74	51	0	0	48	1.00
22527313--22527391	39	2.0	39	100	0	158	39	12	20	27	1.89
22527750--22527798	21	2.3	21	86	13	66	8	14	12	65	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22529391--22529422	9	3.6	9	100	0	64	34	0	0	65	0.93
22530005--22530047	7	5.7	7	84	10	50	27	0	2	69	1.00
22530004--22530041	8	4.8	8	84	12	51	26	0	2	71	1.00
22532001--22532030	16	1.9	15	93	6	51	3	6	0	90	0.56
22541720--22541776	19	2.9	18	80	19	62	49	7	0	43	1.29
22575288--22575335	15	3.2	16	75	21	50	37	0	4	58	1.18
22582414--22582441	2	14.0	2	100	0	56	50	0	0	50	1.00
22586895--22586933	18	2.2	18	100	0	78	20	23	15	41	1.90
22597193--22597217	9	2.8	9	100	0	50	52	36	12	0	1.39
22605955--22606010	29	1.9	29	82	7	69	33	28	10	26	1.90
22616736--22616776	21	2.0	21	85	0	55	17	19	21	41	1.90
22624898--22624922	12	2.1	12	100	0	50	24	36	24	16	1.94
22625083--22625344	9	29.1	9	89	2	384	38	28	11	21	1.88
22625083--22625344	18	14.6	18	96	1	463	38	28	11	21	1.88
22627710--22627743	18	1.9	17	88	5	50	70	2	5	20	1.21
22640706--22640772	33	2.0	33	97	0	125	50	11	10	26	1.71
22646255--22646298	22	2.0	21	82	4	52	27	0	4	68	1.09
22673404--22673746	126	2.7	127	89	2	526	25	20	21	32	1.98
22675911--22675945	15	2.4	14	86	9	52	68	2	14	14	1.32
22679880--22679952	31	2.4	30	80	11	85	45	9	4	41	1.56
22680574--22680627	18	3.2	18	71	15	60	40	18	7	33	1.78
22680565--22680627	33	1.9	33	93	0	108	36	17	7	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22680564--22680618	17	3.3	17	68	14	51	34	14	5	45	1.68
22685202--22685348	43	3.4	43	82	9	174	31	25	18	24	1.97
22708663--22708710	18	2.6	19	77	6	55	47	0	4	47	1.21
22709026--22709064	17	2.3	17	90	0	60	48	2	2	46	1.29
22715130--22715169	21	2.0	20	85	14	55	2	62	2	32	1.22
22727766--22727818	26	2.0	26	100	0	106	20	15	18	45	1.85
22727856--22727932	21	3.7	21	74	10	68	15	23	18	42	1.88
22730452--22730817	44	8.0	44	88	7	516	31	14	21	32	1.93
22732169--22732202	17	2.0	17	88	0	50	35	17	11	35	1.87
22735350--22735402	2	30.5	2	72	27	50	56	0	0	43	0.99
22735352--22735430	5	15.6	5	77	18	67	56	3	0	39	1.17
22735350--22735402	19	2.8	18	88	11	72	56	0	0	43	0.99
22735366--22735431	24	2.7	25	81	9	73	59	4	0	36	1.18
22737031--22737166	24	5.7	26	72	14	82	33	19	27	19	1.96
22739456--22739498	22	2.0	21	86	4	59	44	0	4	51	1.22
22755341--22755379	17	2.3	17	86	8	53	35	0	23	41	1.55
22757583--22757850	74	3.6	75	78	7	242	34	20	26	18	1.96
22757780--22757884	50	2.1	50	94	0	183	36	17	27	19	1.94
22757598--22757855	25	10.4	25	71	10	190	35	20	26	18	1.95
22757737--22757872	25	5.5	25	75	7	116	35	19	26	18	1.95
22769065--22769126	30	2.1	31	82	11	76	40	3	8	48	1.49
22778815--22778850	12	3.0	12	91	0	54	25	33	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22792067--22792120	22	2.4	23	81	9	67	38	18	27	14	1.90
22800090--22800152	22	3.2	22	64	36	61	41	4	12	41	1.64
22800088--22800158	37	1.9	37	100	0	142	40	5	12	40	1.67
22801702--22801778	35	2.2	36	86	9	113	29	3	15	50	1.62
22802904--22802980	14	5.0	15	72	20	61	41	15	10	32	1.81
22807421--22807466	24	2.0	24	86	4	67	32	0	28	39	1.57
22807836--22807880	6	7.5	6	81	18	58	80	0	2	17	0.82
22807836--22807869	11	3.1	11	87	12	52	82	0	0	17	0.67
22807836--22807890	17	3.1	17	85	14	76	78	0	1	20	0.85
22811521--22811563	18	2.4	18	92	0	68	30	9	20	39	1.84
22811787--22812285	249	2.0	250	98	0	964	31	20	15	33	1.93
22814679--22814902	43	5.3	43	86	2	292	22	20	25	31	1.98
22819013--22819089	13	5.9	13	90	0	100	28	7	29	33	1.85
22823270--22823295	1	26.0	1	100	0	52	0	0	0	100	0.00
22828574--22828712	46	3.0	46	87	0	188	28	24	10	36	1.88
22832650--22832870	109	2.0	110	99	0	435	47	9	1	40	1.47
22845974--22846019	1	46.0	1	95	0	83	97	2	0	0	0.15
22853881--22853914	18	1.9	18	88	5	52	29	0	5	64	1.17
22866301--22866444	41	3.5	41	93	0	234	31	15	22	29	1.95
22866909--22867292	41	9.4	41	100	0	768	26	21	29	22	1.99
22867546--22867575	2	15.0	2	100	0	60	50	0	0	50	1.00
22873468--22873498	15	2.1	15	100	0	62	29	38	6	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22881762--22881800	17	2.2	18	86	4	53	38	0	2	58	1.12
22883686--22883724	16	2.4	16	84	16	53	61	0	0	38	0.96
22887982--22888015	13	2.5	13	85	4	50	26	0	2	70	1.01
22889650--22889705	22	2.5	22	74	8	69	76	0	23	0	0.78
22889769--22889794	12	2.2	12	100	0	52	38	0	15	46	1.46
22889887--22890049	19	8.1	19	70	21	100	31	0	14	53	1.42
22889844--22890199	101	3.7	101	77	16	313	31	0	13	54	1.44
22889917--22890202	98	3.1	90	78	11	253	31	0	13	54	1.42
22889966--22890193	22	9.9	22	80	16	250	30	0	14	55	1.43
22889995--22890221	49	4.6	49	89	3	357	31	0	13	54	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135