genome.fa.s8.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  95  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35602312--35602385	29	2.5	29	82	4	85	29	16	10	43	1.82
35602397--35602423	12	2.2	12	100	0	54	22	14	25	37	1.93
35603494--35603531	19	2.0	20	84	5	51	76	2	5	15	1.08
35604654--35604702	15	3.4	15	80	5	57	67	2	0	30	1.02
35606882--35606920	6	6.5	6	100	0	78	33	17	15	33	1.92
35608172--35608208	18	2.1	18	94	0	65	45	8	10	35	1.69
35608557--35608605	17	2.8	16	79	14	53	26	32	0	40	1.56
35611306--35611612	111	2.8	107	88	4	431	26	18	21	33	1.96
35611613--35612113	107	4.9	103	70	15	382	31	17	17	33	1.93
35611613--35611895	105	2.7	105	80	8	326	34	16	14	34	1.89
35612312--35612348	19	1.9	19	88	0	56	29	2	8	59	1.40
35613699--35614097	106	3.7	105	85	5	469	28	16	19	36	1.93
35614103--35614520	107	3.9	107	81	4	479	32	18	17	30	1.95
35615156--35615202	17	2.7	17	75	15	51	63	2	4	29	1.25
35615536--35615573	14	2.9	14	80	11	53	31	0	0	68	0.90
35615534--35615610	18	4.2	18	72	21	63	33	0	2	63	1.08
35634701--35634747	17	2.7	17	75	15	51	63	2	4	29	1.25
35635081--35635118	14	2.9	14	80	11	53	31	0	0	68	0.90
35635079--35635155	18	4.2	18	72	21	63	33	0	2	63	1.08
35635802--35635836	18	1.9	18	88	11	54	42	5	0	51	1.25
35638500--35638524	12	2.1	12	100	0	50	92	0	8	0	0.40
35639499--35639543	3	15.3	3	90	4	65	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35647334--35647512	46	3.9	46	91	4	299	29	24	9	36	1.87
35650088--35650136	22	2.2	22	85	0	62	34	22	22	20	1.97
35659628--35659836	33	6.3	33	89	2	294	31	18	23	26	1.97
35659629--35659836	66	3.2	66	91	1	328	31	18	23	26	1.97
35659629--35659867	33	7.2	33	87	0	237	31	18	23	25	1.97
35659629--35659867	66	3.6	65	88	3	309	31	18	23	25	1.97
35670372--35670404	17	2.0	17	88	5	50	51	0	0	48	1.00
35670701--35671416	118	6.1	118	98	0	1362	37	18	3	40	1.68
35672479--35673299	150	5.4	151	86	6	1115	29	10	7	52	1.63
35673254--35673279	13	2.0	13	100	0	52	15	15	7	61	1.55
35675674--35675717	21	2.1	21	82	0	52	52	22	4	20	1.65
35676959--35676991	17	1.9	17	88	11	50	48	21	0	30	1.50
35689063--35689115	23	2.3	23	80	9	63	16	11	5	66	1.42
35691539--35691591	24	2.3	23	78	15	56	15	16	0	67	1.23
35692182--35692208	14	1.9	14	100	0	54	3	7	51	37	1.48
35693835--35693878	20	2.2	20	88	8	63	54	0	4	40	1.21
35704116--35704190	21	3.7	21	91	3	118	13	25	18	42	1.87
35707268--35707311	13	3.3	13	83	3	52	47	0	6	45	1.29
35714249--35714289	21	2.0	21	85	9	57	43	0	34	21	1.53
35714225--35714284	30	2.0	30	83	3	77	43	0	36	20	1.52
35714777--35714845	4	17.8	4	71	11	54	66	0	2	30	1.06
35714788--35714843	12	4.9	11	77	16	60	64	0	1	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35716939--35716973	5	7.2	5	93	6	63	60	0	40	0	0.97
35716939--35716981	15	2.9	15	89	6	52	60	2	37	0	1.10
35719870--35719909	16	2.6	16	88	4	55	22	2	2	72	1.09
35720307--35720459	51	3.0	51	99	0	297	22	7	18	50	1.72
35720798--35720839	21	2.0	21	90	0	66	54	23	9	11	1.66
35731016--35731428	40	10.3	40	95	0	682	12	13	28	46	1.79
35733214--35733269	28	2.0	28	100	0	112	25	21	25	28	1.99
35737558--35737587	6	5.0	6	95	0	51	16	30	0	53	1.44
35739625--35739786	27	6.0	27	76	10	143	39	19	9	30	1.84
35740243--35740306	28	2.3	28	86	2	85	15	21	23	39	1.92
35743366--35743502	55	2.5	55	90	0	184	21	24	26	27	2.00
35744980--35745016	17	2.2	17	95	4	67	48	8	2	40	1.47
35744970--35745022	17	2.7	20	68	31	51	45	9	1	43	1.47
35746586--35746641	29	1.9	29	85	7	78	35	7	44	12	1.70
35753201--35753250	26	1.9	26	87	0	73	18	16	36	30	1.92
35753277--35753537	42	6.2	41	78	11	251	22	14	25	37	1.93
35753227--35753545	85	3.8	85	91	2	468	22	15	26	35	1.94
35753274--35753545	43	6.4	43	79	11	303	22	15	25	36	1.94
35762426--35762509	28	3.0	28	89	0	132	32	20	22	25	1.98
35762617--35762670	26	2.1	26	85	0	72	35	22	22	20	1.96
35762850--35762959	27	4.1	27	80	6	125	21	14	23	40	1.90
35762850--35762959	54	2.0	54	84	3	141	21	14	23	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35773605--35773655	19	2.7	19	74	20	61	41	3	3	50	1.39
35781607--35781635	15	1.9	15	100	0	58	27	13	13	44	1.82
35787444--35787596	19	7.9	19	91	2	252	37	11	15	35	1.82
35787445--35787596	59	2.6	59	96	2	281	38	11	14	36	1.82
35788335--35788391	22	2.5	22	91	5	87	29	0	7	63	1.21
35792541--35792597	15	3.8	15	88	6	80	80	8	10	0	0.90
35792545--35792604	26	2.2	29	88	8	90	81	8	10	0	0.87
35794266--35794736	132	3.6	132	88	1	685	28	17	22	31	1.97
35794304--35794617	44	7.1	44	64	15	110	29	16	22	31	1.96
35814799--35814829	10	3.1	10	90	0	53	6	9	0	83	0.79
35815855--35815897	10	4.2	10	80	13	52	72	0	6	20	1.08
35815856--35815908	27	1.9	28	84	3	72	73	0	7	18	1.06
35815855--35815923	11	6.0	12	75	24	53	75	0	5	18	1.00
35815868--35815909	17	2.6	16	80	3	57	76	0	7	16	1.00
35815855--35815915	27	2.3	27	80	5	70	75	0	6	18	1.01
35815863--35815922	12	5.3	11	77	18	52	78	0	5	16	0.92
35825150--35825192	23	1.9	22	86	13	61	37	2	9	51	1.47
35826740--35826788	25	1.9	26	91	4	82	55	4	2	38	1.31
35836325--35836610	142	2.0	143	97	1	538	36	22	9	31	1.86
35836599--35836635	2	19.0	2	88	5	58	45	0	2	51	1.15
35850077--35850125	18	2.7	19	84	9	66	73	6	4	16	1.19
35852238--35853034	46	17.4	46	89	1	1120	30	26	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35853923--35854238	97	3.0	106	83	10	416	49	7	16	26	1.73
35854504--35854584	5	16.8	5	71	20	57	4	14	0	80	0.88
35854503--35854588	6	14.3	6	72	26	51	4	15	0	80	0.87
35854510--35854585	15	5.1	14	79	14	71	3	14	0	81	0.83
35854520--35854596	32	2.4	31	79	16	86	3	16	0	79	0.88
35854515--35854590	16	5.0	15	75	21	70	3	15	0	80	0.86
35854617--35854679	33	1.9	33	96	0	117	28	19	19	33	1.96
35859006--35859054	18	2.7	19	84	9	66	73	6	4	16	1.19
35861778--35861820	23	1.9	22	86	13	61	37	2	9	51	1.47
35879151--35879190	20	2.0	20	95	0	71	37	12	5	45	1.64
35887655--35887697	23	1.9	22	86	13	61	37	2	9	51	1.47
35899771--35899837	29	2.3	29	92	0	107	40	11	20	26	1.88
35900236--35900325	9	10.0	9	83	4	83	34	6	22	36	1.80
35900763--35900915	75	2.0	75	100	0	306	32	6	37	23	1.80
35901932--35902314	27	14.2	27	78	5	355	44	18	15	22	1.87
35902467--35902531	26	2.5	25	85	5	76	26	23	21	29	1.99
35902492--35902569	26	3.0	26	76	0	84	24	21	23	30	1.99
35902492--35902598	52	2.1	52	80	3	117	23	19	22	34	1.96
35902707--35902817	30	3.8	29	80	4	109	22	27	21	27	1.99
35909088--35909446	27	13.1	27	78	8	357	42	16	18	22	1.89
35909308--35909375	33	2.1	33	86	5	93	41	13	23	22	1.89
35909442--35909494	27	2.0	27	84	0	70	35	15	20	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35909661--35909762	26	3.9	26	76	10	93	21	21	21	35	1.96
35909869--35909965	30	3.3	30	86	2	135	20	25	22	30	1.98
35912452--35912497	23	1.9	24	83	16	60	21	8	10	58	1.58
35918478--35918520	10	4.1	10	80	11	50	39	2	0	58	1.11
35926686--35927050	183	2.0	183	97	0	685	37	6	21	33	1.80
35930174--35930236	29	2.3	29	89	10	98	49	20	0	30	1.49
35941605--35941745	74	2.0	72	87	9	211	45	18	4	31	1.69
35941629--35941745	37	3.2	37	65	18	107	44	16	4	35	1.67
35941936--35941968	14	2.5	13	95	5	57	75	0	0	24	0.80
35951970--35952035	14	4.8	14	74	20	59	33	24	19	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135