genome.fa.s8.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  96  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35951955--35952035	41	2.0	41	85	4	110	32	23	20	23	1.98
35953660--35953742	23	3.6	23	79	6	96	26	19	18	36	1.94
35954004--35954098	23	4.1	23	81	5	102	32	14	17	34	1.91
35953990--35954092	46	2.2	48	84	3	129	33	12	17	36	1.88
35955632--35955697	32	2.1	32	97	0	123	50	18	7	24	1.72
35956467--35956501	17	2.1	17	100	0	70	5	17	5	71	1.25
35969926--35969956	12	2.6	12	100	0	62	45	0	25	29	1.54
35977864--35977954	45	2.0	45	85	2	121	37	28	6	27	1.82
35977935--35977998	16	3.9	16	95	4	119	35	39	0	25	1.56
35977935--35977997	33	1.9	33	100	0	126	34	39	0	25	1.56
35978638--35978861	44	5.1	45	62	15	126	30	20	23	25	1.98
35978582--35978894	88	3.5	88	92	1	502	30	21	25	23	1.99
35983711--35983779	29	2.3	29	92	2	111	47	5	15	30	1.69
35983977--35984012	18	1.9	19	88	5	56	55	11	11	22	1.66
35985518--35985673	44	3.6	42	77	10	120	26	22	21	29	1.99
35985604--35985714	41	2.7	40	88	4	159	27	18	22	31	1.97
35985868--35986028	44	3.7	43	70	11	119	34	21	14	29	1.93
35986079--35986309	45	5.2	45	86	2	279	25	22	19	32	1.98
35986057--35986345	90	3.2	90	80	4	271	26	23	18	31	1.98
35986057--35986309	134	1.9	133	80	2	301	26	22	19	31	1.98
35986057--35986345	89	3.2	89	80	4	278	26	23	18	31	1.98
35995226--35995260	18	1.9	18	88	0	52	51	17	14	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35996879--35996910	15	2.2	14	94	5	55	31	31	0	37	1.58
36000951--36001007	25	2.3	25	90	0	96	33	14	21	31	1.92
36007293--36007326	12	2.7	13	90	9	61	23	5	14	55	1.61
36008998--36009072	29	2.6	29	86	0	96	20	22	32	25	1.98
36009008--36009087	29	2.8	29	84	0	97	18	20	35	26	1.95
36014630--36014692	29	2.2	28	83	5	83	41	19	15	23	1.90
36015617--36015729	60	1.9	60	96	0	208	53	14	0	31	1.41
36017894--36017948	24	2.3	24	80	0	74	29	29	10	30	1.91
36022166--36022225	18	3.3	18	76	17	70	13	43	1	41	1.54
36024906--36024965	20	2.9	21	87	5	61	36	13	15	35	1.86
36024918--36024967	20	2.5	20	96	0	91	38	10	16	36	1.82
36031271--36031311	21	1.9	22	85	5	57	29	7	21	41	1.80
36038328--36038371	22	2.0	22	90	0	70	29	15	18	36	1.92
36039551--36039597	18	2.6	18	100	0	94	55	4	0	40	1.19
36045960--36046000	19	2.2	19	90	0	64	53	2	14	29	1.54
36046900--36047017	27	4.4	27	77	5	123	38	22	17	20	1.93
36046900--36047004	54	1.9	54	84	3	140	40	20	19	19	1.91
36047021--36047064	21	2.1	21	95	0	79	25	4	29	40	1.75
36049473--36049524	26	2.0	26	92	3	88	57	7	9	25	1.57
36049788--36049885	51	1.9	50	83	2	124	24	32	7	35	1.83
36055800--36055959	78	2.0	79	98	1	313	34	8	7	49	1.62
36055971--36056010	20	2.1	20	86	9	57	35	2	0	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36059983--36060081	25	4.0	25	91	0	162	37	18	26	18	1.93
36059983--36060094	25	4.5	25	85	6	147	37	16	25	19	1.93
36060059--36060105	25	1.9	25	82	4	60	36	17	23	23	1.95
36060601--36060626	8	3.2	8	100	0	52	34	23	0	42	1.54
36061258--36061294	15	2.5	15	100	0	74	24	5	0	70	1.08
36066451--36066566	28	3.3	36	69	23	95	6	27	9	56	1.54
36069707--36069816	45	2.6	43	79	11	120	31	28	5	34	1.80
36070122--36070155	14	2.3	15	90	5	52	38	23	35	2	1.70
36070660--36070693	16	2.2	16	89	5	52	32	0	0	67	0.91
36073218--36073338	34	3.5	35	79	6	122	45	9	22	22	1.81
36073185--36073338	71	2.2	69	83	10	190	46	9	21	22	1.80
36073243--36073340	34	2.9	33	81	4	124	42	10	24	22	1.84
36076078--36076146	29	2.3	29	82	5	84	20	40	0	39	1.52
36076303--36076391	40	2.2	40	94	4	153	25	44	2	26	1.66
36077744--36077783	14	2.9	14	84	0	53	32	7	17	42	1.77
36077767--36077806	20	2.0	20	90	0	62	27	10	12	50	1.72
36077752--36077818	34	1.9	35	90	3	109	31	8	13	46	1.74
36077746--36077822	14	5.0	15	71	20	52	32	9	15	42	1.78
36081389--36081414	10	2.6	10	100	0	52	57	23	0	19	1.40
36084164--36084211	22	2.2	22	81	7	53	68	6	22	2	1.23
36084188--36084245	30	2.0	29	82	3	71	62	1	32	3	1.22
36088728--36088914	51	3.7	50	79	4	223	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36088726--36088910	101	1.8	101	89	3	291	30	27	17	24	1.97
36093602--36093676	23	3.3	23	86	0	105	34	25	18	21	1.96
36093895--36093933	18	2.2	17	86	13	53	46	20	0	33	1.51
36099447--36099625	81	2.2	82	96	2	333	50	10	1	37	1.45
36112178--36112204	6	4.5	6	100	0	54	70	14	14	0	1.17
36116036--36116091	28	2.0	29	89	6	89	44	5	0	50	1.25
36117194--36117259	30	2.3	30	92	5	109	50	3	16	30	1.61
36117419--36117449	9	3.4	9	90	0	53	25	12	22	38	1.90
36117503--36117539	9	4.1	9	92	0	65	45	13	10	29	1.77
36118663--36118700	20	1.9	19	94	5	67	39	2	0	57	1.12
36119634--36119862	104	2.3	96	79	10	248	43	8	22	25	1.82
36119661--36119868	103	2.0	105	86	1	294	44	9	21	25	1.81
36120105--36120245	74	1.9	74	82	5	178	41	12	16	30	1.84
36120179--36120311	60	2.2	60	86	2	187	42	15	17	24	1.88
36120266--36120358	47	2.0	47	86	0	132	39	13	20	25	1.90
36135042--36135145	52	2.0	52	92	7	176	35	14	3	46	1.63
36136653--36136790	57	2.3	60	83	12	169	21	25	21	31	1.98
36140029--36140066	20	1.9	20	84	10	51	42	21	23	13	1.88
36143995--36144074	33	2.5	32	80	10	90	13	38	26	21	1.90
36145722--36145900	50	3.6	51	87	3	256	19	30	22	27	1.98
36150497--36150526	15	2.0	15	93	0	51	23	3	6	66	1.30
36152139--36152177	19	2.1	19	100	0	78	38	30	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36152583--36152940	45	7.9	45	90	2	450	22	19	15	43	1.88
36152689--36152986	90	3.3	90	89	2	269	23	19	16	40	1.90
36157431--36157469	19	2.1	19	85	9	53	35	7	7	48	1.61
36158733--36158865	60	2.2	61	80	7	146	41	12	5	41	1.64
36159506--36159715	52	4.0	52	87	1	267	25	14	20	40	1.90
36159506--36159715	107	2.0	104	83	2	267	25	14	20	40	1.90
36165023--36165127	6	17.7	6	82	3	124	49	0	15	34	1.51
36165361--36165400	17	2.4	17	95	0	71	57	0	5	37	1.21
36165374--36165412	18	2.2	17	86	4	51	64	0	5	30	1.15
36165795--36165840	23	2.0	23	91	0	74	41	21	8	28	1.83
36169824--36170029	93	2.3	92	84	4	265	57	11	5	25	1.55
36169853--36170029	93	1.9	93	91	0	291	57	12	5	24	1.55
36177046--36177092	3	15.7	3	100	0	94	65	0	0	34	0.93
36177986--36178010	13	1.9	13	100	0	50	80	0	8	12	0.92
36178055--36178104	17	2.8	17	78	6	55	56	0	4	40	1.18
36178183--36178229	20	2.3	20	85	0	67	55	0	8	36	1.31
36179261--36179296	18	2.0	18	100	0	72	16	11	11	61	1.57
36179262--36179305	18	2.4	18	92	0	70	15	13	9	61	1.56
36179864--36180001	44	3.1	45	89	3	183	26	23	20	28	1.99
36179886--36180001	44	2.6	44	94	0	196	26	27	18	27	1.98
36179953--36180600	132	4.9	130	88	2	886	28	22	18	29	1.98
36179970--36180600	264	2.4	263	90	1	992	28	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36180348--36180523	44	4.0	45	62	12	103	28	23	18	28	1.98
36180660--36180803	44	3.3	44	69	7	112	20	22	31	25	1.98
36180588--36180815	88	2.6	88	90	2	366	19	23	26	30	1.98
36186799--36186823	13	1.9	13	100	0	50	80	0	8	12	0.92
36186831--36186913	41	2.1	41	93	4	143	54	4	6	34	1.46
36186961--36187007	20	2.3	20	85	0	67	55	0	8	36	1.31
36189522--36189562	20	2.0	20	85	9	55	36	0	2	60	1.10
36189553--36189613	29	2.1	29	87	6	88	54	3	0	42	1.17
36191662--36191933	43	6.4	43	85	4	356	33	21	22	22	1.98
36191664--36191933	85	3.2	84	87	4	391	32	21	22	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135