genome.fa.s8.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  42  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16455000--16455198	43	4.6	43	83	5	251	32	26	17	24	1.97
16455000--16455198	86	2.3	86	88	1	292	32	26	17	24	1.97
16463356--16463479	42	3.1	41	76	12	114	24	23	19	33	1.97
16463807--16464041	7	33.0	7	70	13	68	42	33	1	22	1.62
16463807--16464046	14	16.9	14	72	12	87	43	32	1	22	1.62
16463931--16464035	22	4.9	22	69	16	58	48	28	0	21	1.57
16465261--16465420	7	22.4	7	71	8	72	46	30	1	21	1.60
16465231--16465352	57	2.1	57	87	0	172	41	34	0	23	1.55
16465283--16465330	15	3.3	15	88	5	71	41	41	0	16	1.48
16465261--16465371	50	2.2	50	81	0	132	46	31	0	21	1.52
16465255--16465364	29	3.8	29	78	7	100	45	32	0	21	1.52
16465231--16465366	57	2.4	57	85	2	157	42	33	0	23	1.54
16465430--16465479	24	2.1	24	100	0	100	46	8	4	42	1.52
16465674--16465993	157	2.0	158	98	0	624	41	13	13	31	1.83
16466024--16466494	40	11.9	40	74	9	360	28	22	20	28	1.98
16465907--16466494	275	2.1	276	84	3	756	28	21	20	28	1.98
16477311--16477435	60	2.1	60	87	0	178	40	14	29	16	1.87
16479269--16479393	60	2.1	60	87	0	178	40	14	29	16	1.87
16480430--16480619	94	2.0	95	98	1	373	31	16	7	45	1.75
16481303--16482272	5	194.0	5	96	0	1780	39	20	0	39	1.58
16499185--16499269	43	2.0	43	92	0	143	50	2	21	25	1.60
16502854--16502883	15	2.0	15	93	0	51	70	0	23	6	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16508711--16509008	30	9.9	29	73	7	229	25	25	13	35	1.92
16508714--16508885	92	1.9	92	85	2	238	25	25	13	36	1.93
16508723--16509008	60	4.7	60	84	1	347	25	26	11	36	1.91
16508707--16509009	90	3.4	90	78	3	313	26	25	12	35	1.92
16518882--16518913	17	1.9	16	93	6	55	6	37	3	53	1.42
16519222--16519268	19	2.4	20	85	7	69	59	0	4	36	1.17
16519241--16519296	29	2.0	29	86	10	80	60	1	0	37	1.07
16519623--16519889	91	2.9	90	83	9	292	36	9	17	35	1.83
16522519--16522682	76	2.1	75	81	11	190	41	0	30	27	1.61
16523221--16523280	17	3.4	17	76	17	52	56	3	1	38	1.26
16532567--16532789	27	8.3	28	87	5	259	42	16	21	20	1.89
16532567--16532791	81	2.8	81	84	4	294	42	16	20	20	1.89
16533026--16533126	26	3.9	26	80	0	121	15	18	24	40	1.90
16533021--16533120	52	1.9	53	89	6	159	19	19	23	39	1.93
16533236--16533349	30	3.9	29	76	3	111	21	26	21	29	1.99
16542692--16542718	13	2.1	13	100	0	54	33	0	22	44	1.53
16542976--16543004	14	2.0	15	93	6	51	31	0	6	62	1.22
16546030--16546144	19	5.6	22	85	9	70	40	16	6	36	1.76
16546066--16546159	19	4.9	19	97	0	179	37	15	9	37	1.81
16546043--16546159	38	3.0	38	91	5	180	38	16	8	36	1.79
16553800--16553910	55	2.0	56	87	1	161	37	8	10	43	1.69
16553800--16553946	55	2.5	55	81	7	159	36	8	12	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16559673--16559710	16	2.4	16	95	0	67	39	10	18	31	1.85
16569953--16570047	45	2.1	45	90	3	147	29	21	20	29	1.98
16577996--16578048	21	2.5	20	79	11	61	43	15	0	41	1.46
16578320--16579034	238	3.0	239	91	2	1172	36	14	13	35	1.86
16579405--16579449	24	1.9	24	86	4	65	44	2	44	8	1.47
16587817--16587928	56	2.0	56	98	0	215	40	8	25	26	1.83
16588058--16588106	25	2.0	24	92	4	80	34	10	16	38	1.82
16600288--16600326	20	1.9	21	89	5	62	46	0	5	48	1.24
16605582--16605821	102	2.3	102	85	1	318	31	27	20	21	1.97
16613349--16613413	28	2.2	29	89	8	105	35	3	20	41	1.68
16614347--16614379	8	4.1	8	100	0	66	12	0	24	63	1.28
16616282--16616665	27	14.3	27	79	5	379	41	20	20	17	1.90
16616282--16616664	54	7.1	54	84	6	467	41	20	20	17	1.90
16616663--16616714	27	2.0	26	85	11	70	32	19	21	26	1.97
16616845--16616925	26	3.1	26	87	3	119	18	24	25	30	1.98
16617675--16617822	53	2.8	53	88	4	235	43	14	18	22	1.87
16618366--16618563	53	3.7	53	88	0	270	41	15	20	23	1.89
16618366--16618563	107	1.9	106	85	1	279	41	15	20	23	1.89
16618961--16619028	30	2.3	30	79	5	75	17	20	23	38	1.93
16621457--16621511	29	1.9	28	85	3	74	21	36	29	12	1.91
16626863--16626918	28	2.0	28	96	0	103	35	19	3	41	1.69
16627268--16627351	42	2.0	42	97	0	159	34	19	0	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16635902--16635944	22	2.0	22	90	0	68	48	2	0	48	1.14
16638632--16638751	64	1.9	64	92	0	204	48	21	5	25	1.70
16638729--16638771	19	2.3	19	92	8	70	58	16	0	25	1.38
16638729--16638774	10	4.9	9	84	7	56	56	17	0	26	1.41
16638877--16638969	19	5.1	19	68	21	72	45	12	9	32	1.75
16638867--16638992	54	2.3	54	93	0	216	42	15	9	33	1.79
16639725--16639755	16	1.9	16	93	0	53	0	12	6	80	0.89
16651263--16651302	18	2.2	18	86	8	55	37	0	2	60	1.11
16652892--16652926	8	4.5	8	96	3	63	25	0	0	74	0.82
16652892--16652931	16	2.6	15	88	7	62	22	2	0	75	0.93
16653154--16653228	37	2.0	37	92	5	123	54	8	6	30	1.55
16661860--16661898	18	2.2	18	86	9	53	25	17	2	53	1.56
16663413--16663458	21	2.1	23	84	8	60	36	4	15	43	1.66
16665972--16666016	19	2.4	19	85	7	56	26	24	11	37	1.89
16669800--16669880	24	3.4	24	88	6	119	34	12	23	29	1.91
16670155--16670916	44	17.1	44	78	5	572	31	19	23	25	1.98
16670158--16670909	178	4.2	177	83	4	756	30	19	23	25	1.98
16670158--16670854	223	3.1	220	82	4	810	30	19	23	25	1.98
16670985--16671079	51	2.0	48	82	12	115	30	20	24	25	1.98
16670786--16671053	143	1.9	143	85	1	376	28	19	23	27	1.98
16671001--16671104	51	2.0	51	90	0	163	31	18	22	27	1.97
16670858--16671219	194	1.9	195	87	2	541	30	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16671165--16671595	45	9.7	45	65	12	136	29	22	21	26	1.99
16671170--16671724	89	6.2	89	85	0	633	29	22	21	26	1.99
16671367--16671668	45	6.8	46	68	14	159	29	22	22	25	1.99
16671405--16671632	44	5.1	44	67	14	135	28	24	23	23	2.00
16671722--16671997	131	2.1	133	86	4	380	30	19	25	25	1.98
16678620--16678763	49	2.9	49	84	6	193	30	29	14	25	1.95
16679634--16679905	102	2.7	102	91	1	429	31	27	19	20	1.97
16679781--16679862	27	2.8	27	87	10	101	31	30	21	15	1.95
16683325--16683372	17	2.7	17	80	6	51	56	4	0	39	1.19
16683331--16683400	27	2.5	27	81	9	70	61	1	2	34	1.20
16696390--16696453	24	2.6	25	80	9	69	73	4	3	18	1.14
16696390--16696454	25	2.6	26	78	7	71	73	4	3	18	1.13
16698324--16698535	50	4.3	50	82	3	214	23	28	21	26	1.99
16698394--16698562	50	3.3	50	80	6	151	21	30	21	26	1.99
16698683--16698727	22	2.0	23	82	4	56	57	4	6	31	1.44
16701549--16701575	14	1.9	14	100	0	54	14	22	14	48	1.81
16705133--16705339	50	4.3	50	80	11	241	22	29	22	25	1.99
16705212--16705339	44	2.8	45	86	7	177	25	32	18	24	1.97
16705169--16705339	94	1.8	94	88	2	263	23	30	21	23	1.99
16714350--16714406	30	1.9	29	82	10	71	33	10	12	43	1.76
16715066--16715362	126	2.4	126	85	2	382	37	18	17	27	1.93
16715437--16715502	25	2.6	25	88	4	89	53	1	21	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16721959--16722019	30	2.0	30	100	0	122	26	19	9	44	1.82
16728436--16728479	21	2.1	21	82	0	52	27	6	2	63	1.31
16733347--16733444	1	98.0	1	67	0	52	83	4	11	1	0.83
16733370--16733445	6	13.0	6	80	16	81	82	0	15	1	0.73
16733347--16733444	35	2.8	35	80	14	112	83	4	11	1	0.83
16733728--16733912	97	1.9	93	90	4	289	26	16	10	47	1.78
16734789--16735407	44	14.2	44	68	11	333	28	20	25	25	1.99
16734833--16735206	87	4.3	86	69	9	254	28	21	25	24	1.99
16734735--16735491	131	5.8	131	91	2	1214	29	20	25	24	1.99
16735423--16735611	88	2.2	88	90	2	292	28	19	25	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135