genome.fa.s8.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  128  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46180859--46180894	17	2.1	18	89	5	56	50	5	0	44	1.25
46184448--46184474	11	2.5	11	100	0	54	29	7	14	48	1.71
46184008--46184892	440	2.0	440	94	0	1563	29	11	16	42	1.83
46197642--46197699	26	2.2	26	78	6	64	55	3	5	36	1.39
46201269--46201461	28	6.9	28	78	9	164	25	22	13	38	1.91
46201306--46201463	84	1.9	84	86	5	230	25	18	12	43	1.85
46202837--46202868	15	2.1	15	100	0	64	6	31	6	56	1.49
46209945--46209985	15	2.7	15	85	10	57	41	4	0	53	1.22
46209945--46209989	16	2.9	16	87	9	58	42	6	0	51	1.28
46238611--46238670	24	2.7	22	80	12	61	63	10	23	3	1.40
46241717--46241750	17	2.0	17	88	0	50	52	8	20	17	1.71
46242174--46242210	18	2.1	18	90	10	58	18	29	8	43	1.79
46246855--46246902	23	2.1	23	88	0	69	41	20	8	29	1.81
46249530--46249560	15	2.1	15	100	0	62	19	25	12	41	1.87
46269861--46269900	18	2.2	19	86	4	55	35	7	2	55	1.42
46269867--46269901	17	2.0	18	88	5	54	40	2	5	51	1.40
46273041--46273082	19	2.3	18	92	8	75	26	0	4	69	1.08
46275795--46275841	24	1.9	25	86	4	69	38	2	34	25	1.68
46275795--46275854	24	2.6	24	82	12	65	35	1	38	25	1.66
46276421--46276559	27	5.2	27	87	1	190	41	23	17	17	1.90
46276421--46276559	53	2.6	54	89	1	217	41	23	17	17	1.90
46284393--46284516	66	1.9	66	86	3	178	22	18	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46284651--46284711	11	5.5	11	78	0	68	19	36	1	42	1.61
46284834--46284875	11	3.8	11	87	0	57	23	30	0	45	1.53
46284676--46284980	161	1.9	163	91	4	510	26	16	5	51	1.66
46291375--46291413	18	2.0	20	90	9	64	46	5	0	48	1.24
46291424--46291477	22	2.7	19	78	18	56	68	3	3	24	1.22
46299704--46299744	20	2.0	22	85	9	59	39	2	12	46	1.54
46308779--46308819	18	2.3	19	80	16	52	29	2	2	65	1.18
46310689--46310732	7	6.3	7	100	0	88	13	0	13	72	1.12
46310695--46310741	21	2.2	21	84	0	58	14	4	14	65	1.41
46311226--46311267	17	2.4	17	84	15	50	30	0	4	64	1.14
46313162--46313219	25	2.3	25	75	0	62	13	22	24	39	1.90
46313238--46313298	25	2.4	25	86	5	79	19	29	19	31	1.97
46322158--46322192	18	1.9	18	94	0	61	25	28	8	37	1.85
46322451--46322491	21	2.0	21	100	0	82	29	53	17	0	1.44
46325743--46326140	126	3.2	125	87	2	584	28	16	16	38	1.90
46326196--46326330	34	3.9	34	80	5	155	42	13	0	43	1.43
46326382--46326427	22	2.0	23	84	12	60	47	41	0	10	1.38
46328362--46328443	42	2.0	42	97	0	155	40	0	21	37	1.54
46328374--46328442	21	3.3	21	67	15	61	42	0	20	37	1.52
46328615--46328655	16	2.8	15	85	10	50	56	14	0	29	1.39
46332904--46332939	15	2.4	15	95	0	63	27	33	22	16	1.95
46337208--46337254	20	2.4	19	80	13	51	55	2	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46338821--46338867	20	2.4	19	80	13	51	55	2	2	40	1.24
46340245--46340297	18	3.1	16	81	10	52	45	1	0	52	1.11
46340256--46340293	16	2.4	16	90	0	58	44	2	0	52	1.14
46340245--46340283	16	2.3	18	86	8	55	43	0	0	56	0.99
46341363--46341437	31	2.4	31	82	4	89	22	17	16	44	1.87
46344260--46344480	89	2.5	89	83	4	286	38	20	8	33	1.82
46346377--46346408	2	16.0	2	100	0	64	50	0	0	50	1.00
46347714--46347749	18	1.9	19	88	5	56	50	0	0	50	1.00
46348044--46348081	19	2.0	19	85	10	51	47	10	2	39	1.52
46350493--46350517	2	12.5	2	100	0	50	48	0	0	52	1.00
46357087--46357964	439	2.0	439	91	1	1438	32	18	21	27	1.96
46362900--46362964	22	3.0	21	75	4	67	46	18	18	16	1.85
46362956--46363094	32	4.4	32	85	0	163	37	20	22	19	1.94
46363248--46363315	24	2.9	24	82	6	68	44	22	8	25	1.81
46363336--46363520	27	7.0	27	73	3	133	23	18	20	37	1.94
46364960--46365298	51	6.7	51	78	9	286	28	15	26	29	1.96
46364960--46365301	102	3.4	102	82	4	390	28	15	26	29	1.96
46370233--46370594	164	2.2	164	97	0	697	19	18	17	44	1.87
46373675--46373779	44	2.5	40	76	15	113	31	29	4	34	1.78
46373673--46373782	45	2.6	44	81	8	131	31	29	5	33	1.80
46373761--46373798	16	2.4	16	90	0	58	34	34	0	31	1.58
46376415--46376648	35	6.5	36	79	6	208	25	17	14	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46376426--46376589	36	4.6	36	82	6	190	25	17	16	41	1.89
46376426--46376648	71	3.1	71	80	6	225	25	17	15	41	1.88
46376404--46376649	108	2.3	108	82	9	299	26	17	15	41	1.89
46380639--46380672	17	1.9	18	94	5	61	17	0	0	82	0.67
46381539--46381612	21	3.5	21	73	14	71	25	32	18	22	1.97
46383977--46384011	2	17.5	2	93	0	61	2	0	45	51	1.16
46391775--46391824	26	1.9	26	91	0	82	30	34	18	18	1.94
46391801--46391948	41	3.6	41	89	0	224	24	25	19	30	1.98
46397512--46397571	30	2.0	30	83	3	75	41	0	38	20	1.52
46399485--46399528	22	1.9	24	90	9	74	0	18	4	77	0.94
46403089--46403247	62	2.6	62	78	0	165	20	23	27	28	1.99
46407820--46407864	23	2.0	23	86	8	65	35	11	17	35	1.86
46413332--46413402	20	3.4	21	81	12	85	28	2	15	53	1.56
46413319--46413402	20	4.3	19	73	19	66	28	3	15	52	1.59
46413319--46413402	41	2.1	38	86	6	114	28	3	15	52	1.59
46413369--46413465	28	3.4	28	84	4	124	24	1	18	55	1.49
46413319--46413466	9	15.8	9	71	22	101	27	2	16	54	1.53
46413886--46413923	18	2.1	18	85	9	51	42	0	21	36	1.53
46418810--46418901	25	3.8	25	77	9	111	16	27	22	33	1.95
46418827--46418919	47	2.0	46	87	6	134	17	27	21	33	1.96
46418827--46418919	46	2.0	47	87	6	136	17	27	21	33	1.96
46422516--46422555	21	1.9	21	89	0	62	62	7	25	5	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46425409--46425523	25	4.6	25	98	0	212	42	0	13	43	1.44
46425519--46426118	33	20.5	31	73	19	445	46	24	0	28	1.53
46425566--46425639	24	3.0	24	79	11	87	44	25	0	29	1.54
46425524--46426179	87	7.5	87	97	1	1199	46	25	0	28	1.53
46425653--46425726	24	3.0	24	79	11	87	44	25	0	29	1.54
46425740--46425813	24	3.0	24	79	11	87	44	25	0	29	1.54
46425741--46425830	24	3.5	24	67	21	65	47	24	0	27	1.52
46425829--46425900	24	3.0	24	78	11	83	44	26	0	29	1.55
46425934--46426064	25	4.7	25	69	22	84	47	25	0	26	1.52
46426093--46426252	29	6.1	29	65	28	106	45	25	0	28	1.54
46426148--46426262	23	4.8	23	76	17	117	46	24	0	27	1.58
46426162--46426207	22	2.2	20	88	11	67	45	28	0	26	1.54
46426125--46426236	51	2.3	49	88	8	174	43	28	0	27	1.55
46426259--46426475	116	1.9	116	87	5	323	37	9	10	42	1.72
46426883--46428666	892	2.0	892	92	1	2941	27	24	19	28	1.98
46430406--46430774	124	3.0	125	89	1	562	31	23	15	29	1.95
46433223--46433302	39	2.1	39	97	0	151	16	23	13	46	1.83
46435202--46435248	22	2.1	22	92	0	76	19	31	0	48	1.49
46439887--46439951	31	2.1	31	85	5	87	27	18	18	35	1.94
46440432--46440471	20	2.0	20	90	0	62	27	10	12	50	1.72
46440417--46440483	34	1.9	35	87	3	100	32	8	11	46	1.72
46440464--46440549	33	2.6	31	78	12	91	26	9	17	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46443502--46443530	3	9.7	3	100	0	58	34	0	0	65	0.93
46447548--46447596	21	2.4	21	86	3	64	69	2	2	26	1.10
46447548--46447596	10	4.8	10	75	5	53	69	2	2	26	1.10
46447572--46447666	41	2.3	42	78	14	99	63	4	7	25	1.39
46448021--46448254	90	2.6	85	83	9	265	34	11	19	33	1.89
46449390--46450269	248	3.6	247	88	2	1241	42	11	14	32	1.81
46452248--46452281	8	4.2	8	100	0	68	35	23	0	41	1.55
46457170--46457421	125	2.0	125	96	0	468	26	15	26	30	1.96
46462107--46462297	26	7.6	26	76	11	159	38	22	24	14	1.92
46462115--46462297	49	3.7	49	73	13	160	37	22	24	14	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135