genome.fa.s8.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  82  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32031038--32031070	15	2.2	15	94	0	57	39	21	21	18	1.93
32039985--32040078	49	1.9	49	84	4	127	26	6	20	46	1.74
32044064--32044116	27	2.0	26	82	14	63	9	24	1	64	1.34
32044308--32044332	12	2.1	12	100	0	50	92	0	8	0	0.40
32045991--32046119	67	1.9	67	87	0	186	30	16	19	34	1.94
32048442--32048496	28	2.0	27	89	6	85	38	3	21	36	1.71
32052328--32052377	13	3.8	13	78	2	55	36	0	0	64	0.94
32052266--32052504	119	2.0	120	99	0	471	41	1	4	53	1.30
32052437--32052511	35	2.1	37	82	12	93	38	0	1	60	1.06
32052458--32052503	21	2.2	21	88	7	67	36	0	0	63	0.95
32052445--32052495	18	2.8	18	74	11	50	37	0	0	62	0.95
32052494--32052550	29	2.0	28	83	10	71	43	7	0	49	1.29
32053456--32053489	15	2.3	15	89	0	50	50	0	2	47	1.16
32053991--32054041	9	5.2	10	76	11	52	66	1	0	31	1.03
32053991--32054050	19	3.1	19	80	7	59	63	1	1	33	1.14
32057630--32057803	33	5.3	33	88	1	226	14	34	13	37	1.86
32061853--32061911	31	1.9	31	83	13	77	30	3	5	61	1.34
32063367--32063459	40	2.3	39	80	7	98	38	17	19	24	1.92
32063633--32063671	20	2.0	20	84	0	51	20	25	2	51	1.60
32063697--32063726	14	2.1	14	93	0	51	3	26	10	60	1.45
32068593--32068754	41	4.0	41	91	0	252	26	25	19	28	1.99
32068573--32068759	82	2.3	82	88	0	284	26	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32072351--32072482	43	3.1	43	86	0	183	25	15	29	30	1.95
32073802--32073964	84	1.9	85	98	1	319	53	7	5	33	1.53
32075712--32075921	43	4.9	43	83	3	226	25	19	24	30	1.98
32075720--32075921	86	2.4	85	85	3	280	25	19	24	29	1.99
32076856--32077159	42	7.2	42	89	3	434	33	21	21	23	1.97
32077629--32077694	21	3.1	21	82	0	78	4	40	21	33	1.73
32080468--32080812	121	2.9	121	96	0	620	44	7	7	39	1.62
32080849--32080937	18	4.8	18	71	14	74	38	2	12	47	1.54
32080862--32080940	22	3.8	22	71	21	64	37	2	12	46	1.55
32083175--32083538	165	2.2	165	100	0	728	34	19	11	34	1.88
32084474--32084581	22	5.2	21	73	19	93	32	44	0	22	1.59
32084475--32084603	60	2.1	62	85	5	183	33	42	0	23	1.60
32084557--32084597	16	2.5	17	88	8	66	31	46	0	21	1.52
32084557--32084603	16	2.8	16	81	18	60	34	42	0	23	1.54
32085094--32085262	41	4.1	41	72	12	143	34	26	17	21	1.95
32085107--32085287	41	4.4	41	69	15	133	37	25	16	21	1.93
32090106--32090170	30	2.1	30	82	2	76	40	6	10	43	1.65
32091389--32091442	28	2.0	28	82	7	67	14	7	12	64	1.47
32104657--32104811	52	3.0	52	98	0	292	19	22	12	45	1.84
32105861--32105957	29	3.3	28	80	7	113	39	19	2	39	1.64
32106323--32106362	15	2.7	16	85	11	50	77	2	20	0	0.88
32106293--32106356	22	3.0	20	84	11	74	75	6	15	3	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32106440--32106498	4	15.8	4	80	16	65	71	0	28	0	0.87
32106441--32106498	11	5.5	11	76	19	70	70	0	29	0	0.87
32106440--32106490	7	6.9	7	81	18	59	70	0	29	0	0.87
32106441--32106527	18	4.5	19	77	12	81	70	0	29	0	0.88
32106749--32106801	26	2.2	23	83	10	61	22	45	22	9	1.81
32106801--32106856	14	4.1	13	80	11	58	82	0	17	0	0.68
32106803--32106856	10	4.8	11	78	21	51	81	0	18	0	0.69
32106814--32106856	18	2.4	18	88	11	63	83	0	16	0	0.64
32106804--32106854	12	4.4	12	79	16	54	82	0	17	0	0.67
32113634--32113968	173	1.9	173	90	1	537	51	11	16	20	1.75
32117182--32117585	126	3.2	126	90	0	621	31	17	21	29	1.96
32117583--32117738	22	7.3	22	70	15	105	25	1	30	41	1.66
32117747--32117797	27	1.9	26	84	4	66	33	0	27	39	1.57
32117777--32117817	7	6.0	7	88	2	57	17	0	39	43	1.49
32119046--32119071	7	3.7	7	100	0	52	57	15	0	26	1.38
32119240--32119277	20	1.9	20	84	10	51	55	7	2	34	1.43
32120243--32120353	11	10.4	11	70	15	81	44	1	30	23	1.64
32120219--32120318	51	2.0	51	88	4	148	45	2	27	26	1.65
32127383--32127435	21	2.5	21	93	0	88	30	37	9	22	1.86
32131925--32131978	23	2.2	25	78	12	60	68	1	11	18	1.28
32141859--32141921	11	5.8	11	78	10	67	73	3	1	22	1.07
32146221--32146249	3	9.7	3	100	0	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32154290--32154343	24	2.3	24	82	17	62	9	24	7	59	1.54
32163899--32163934	16	2.2	17	90	5	56	69	0	0	30	0.89
32166220--32166251	10	3.2	10	95	0	55	46	28	6	18	1.73
32167119--32167228	41	2.7	41	83	5	141	36	21	20	21	1.95
32176922--32176953	12	2.6	13	85	14	50	37	0	6	56	1.25
32176997--32177214	113	1.9	113	95	0	391	35	17	13	32	1.90
32179259--32179327	30	2.5	27	79	13	79	47	18	0	33	1.49
32181693--32181722	15	2.0	15	100	0	60	46	33	6	13	1.69
32182162--32182229	23	3.0	23	82	4	84	19	20	20	39	1.92
32182673--32182794	61	2.0	61	96	0	226	36	7	18	36	1.79
32186945--32186998	24	2.3	23	77	3	63	62	0	0	37	0.95
32187755--32187803	11	4.5	11	76	0	53	18	14	10	57	1.65
32187760--32187801	22	1.9	22	95	0	75	21	16	7	54	1.65
32192350--32192419	22	3.1	22	79	8	79	71	2	1	24	1.08
32192361--32192419	23	2.6	22	89	5	91	71	3	1	23	1.11
32192479--32192821	142	2.5	133	81	7	384	49	9	12	27	1.73
32194374--32194427	16	2.8	20	74	17	53	44	9	0	46	1.35
32194786--32194826	22	2.0	22	85	9	59	39	7	21	31	1.81
32218594--32218637	13	3.4	13	100	0	88	45	0	0	54	0.99
32219680--32219727	18	2.7	18	93	0	78	35	14	12	37	1.84
32226167--32226867	157	4.6	153	82	8	830	30	8	7	53	1.58
32226135--32226868	304	2.4	304	87	5	1042	30	8	6	53	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32226872--32227808	150	6.2	149	89	6	1297	53	6	9	29	1.59
32228092--32228125	18	1.9	18	88	5	52	29	0	5	64	1.17
32229622--32229834	85	2.5	82	79	8	230	30	6	23	40	1.79
32234375--32234415	14	2.9	15	78	7	50	46	17	4	31	1.69
32234367--32234429	28	2.2	28	80	0	72	41	17	6	34	1.75
32242874--32243083	3	70.0	3	100	0	420	66	0	0	33	0.92
32248980--32249014	18	1.9	18	88	0	52	0	25	34	40	1.56
32249060--32249095	6	6.0	6	100	0	72	16	0	50	33	1.46
32249297--32249331	3	11.7	3	90	0	52	2	34	34	28	1.72
32250840--32250864	13	1.9	13	100	0	50	56	0	0	44	0.99
32256055--32256079	13	1.9	13	100	0	50	32	8	8	52	1.60
32257696--32257814	44	2.7	44	88	0	166	41	17	5	36	1.72
32261898--32261950	26	2.0	26	88	0	79	32	3	18	45	1.68
32267547--32267637	45	2.0	45	85	2	121	37	28	6	27	1.82
32267618--32267653	16	2.2	16	100	0	72	38	36	0	25	1.56
32269615--32269656	16	2.7	16	82	14	52	40	2	0	57	1.12
32274209--32274273	32	2.0	32	100	0	130	29	21	21	27	1.99
32277994--32278080	42	2.0	42	82	10	106	31	25	14	28	1.95
32278022--32278381	50	7.3	50	78	3	352	32	26	14	26	1.95
32280511--32280603	46	2.0	46	100	0	186	40	19	4	35	1.71
32281704--32282588	441	2.0	442	99	0	1754	36	16	7	39	1.77
32290788--32290812	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32290982--32291201	110	2.0	111	91	2	363	28	22	25	23	1.99
32291573--32291630	18	3.2	18	97	0	107	24	29	6	39	1.81
32291886--32291934	21	2.3	21	80	13	57	34	36	26	2	1.68
32292059--32292182	25	5.1	25	72	14	116	41	1	12	43	1.53
32292037--32292200	71	2.4	68	84	11	215	40	1	12	45	1.50
32292181--32292213	9	3.7	9	100	0	66	30	0	12	57	1.35
32292243--32292912	23	28.6	23	83	6	810	50	20	4	25	1.67
32292718--32292755	18	2.1	18	95	0	67	55	26	0	18	1.43
32292917--32293134	115	1.9	115	90	4	350	40	11	7	40	1.69
32295988--32296396	124	3.3	124	89	0	584	33	20	14	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135