genome.fa.s8.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  117  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42589709--42589747	18	2.2	18	86	13	55	69	0	0	30	0.89
42589708--42589747	19	2.2	18	91	8	64	70	0	0	30	0.88
42589709--42589774	27	2.5	26	85	9	89	63	3	1	31	1.19
42591768--42591802	16	2.1	18	89	10	56	40	0	0	60	0.97
42592730--42592975	3	82.0	3	100	0	492	66	0	0	33	0.92
42593355--42593439	41	2.0	42	97	2	163	40	14	8	37	1.75
42594664--42595515	42	20.8	40	78	11	523	25	20	22	30	1.98
42594671--42595515	82	10.3	82	94	2	1287	25	20	22	30	1.99
42595504--42595688	44	4.2	44	68	10	126	27	23	21	28	1.99
42595487--42595794	132	2.4	131	92	1	510	27	24	19	28	1.98
42595774--42596273	45	11.3	44	69	15	277	23	23	24	28	1.99
42595785--42596100	89	3.6	89	88	3	474	21	23	24	29	1.99
42596052--42596523	86	5.5	86	90	1	730	25	23	23	28	2.00
42597728--42597789	5	12.2	5	80	16	74	3	16	1	79	0.95
42597742--42597801	29	2.1	28	84	3	75	6	11	3	78	1.06
42601675--42601920	3	82.0	3	100	0	492	66	0	0	33	0.92
42603170--42603210	18	2.3	18	86	0	64	53	7	7	31	1.56
42605287--42605327	18	2.3	18	86	0	64	53	7	7	31	1.56
42606850--42607022	92	1.9	92	100	0	346	53	10	8	27	1.63
42608941--42609028	37	2.4	37	84	1	113	21	18	36	23	1.95
42611316--42611491	86	2.0	87	92	4	291	20	14	22	42	1.88
42615166--42615337	86	2.0	86	96	0	317	18	14	24	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42616364--42616388	12	2.1	12	100	0	50	24	0	0	76	0.80
42616348--42616397	24	2.2	23	83	16	61	32	0	2	66	1.03
42617365--42617413	5	10.4	5	93	6	61	32	2	0	65	1.04
42618002--42618027	2	13.0	2	100	0	52	50	0	0	50	1.00
42622837--42622895	20	3.0	21	74	18	63	50	22	0	27	1.49
42624677--42624725	21	2.5	20	86	6	64	20	6	0	73	1.04
42627706--42627953	105	2.4	105	80	3	286	23	30	21	24	1.99
42629748--42629791	18	2.4	19	81	11	56	40	0	2	56	1.11
42640679--42640782	27	3.9	27	71	7	95	20	31	18	29	1.96
42644090--42644821	366	2.0	367	95	0	1331	27	17	24	29	1.97
42654826--42654856	9	3.3	9	95	4	53	58	0	0	41	0.98
42655196--42655253	17	3.5	17	72	13	59	39	0	1	58	1.08
42676131--42676190	27	2.2	27	85	5	77	66	3	5	25	1.27
42676131--42676214	27	3.3	26	78	18	72	67	3	3	25	1.22
42676176--42676321	70	2.1	72	89	2	224	58	7	7	26	1.53
42677237--42677276	21	1.9	21	89	0	62	62	10	2	25	1.39
42688558--42688604	18	2.6	18	86	6	60	70	6	12	10	1.33
42689971--42690012	20	2.1	20	90	0	66	42	19	26	11	1.85
42690666--42690695	11	2.8	11	95	5	53	30	0	0	70	0.88
42695080--42695220	40	3.5	40	83	0	174	40	17	24	17	1.91
42695605--42695652	25	1.9	25	95	0	87	35	8	0	56	1.30
42699225--42699443	72	3.1	72	78	5	255	35	5	12	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42700242--42700303	27	2.3	27	97	0	115	50	12	0	37	1.41
42706946--42707058	34	3.3	34	83	0	118	44	15	6	34	1.71
42713023--42713066	13	3.5	13	75	12	56	34	2	6	56	1.38
42713016--42713067	24	2.2	24	92	0	86	34	1	5	57	1.33
42713848--42713899	22	2.3	22	83	3	68	50	1	0	48	1.12
42714662--42714709	21	2.3	21	88	0	69	41	31	8	18	1.80
42714712--42714740	13	2.1	14	93	6	51	48	31	0	20	1.50
42714749--42714836	7	12.7	7	78	2	61	20	5	35	38	1.76
42714919--42715000	28	2.9	28	68	10	69	19	13	26	40	1.89
42716135--42716196	15	4.2	15	79	2	54	54	3	12	29	1.53
42716132--42716190	30	2.0	30	86	0	82	49	1	15	33	1.55
42717502--42717564	29	2.2	29	80	8	76	30	9	3	57	1.46
42717777--42717824	15	3.2	15	81	0	60	37	0	16	45	1.48
42719829--42719858	3	10.0	3	100	0	60	0	33	0	66	0.92
42720080--42720108	6	4.8	6	100	0	58	34	34	13	17	1.89
42721874--42721935	31	2.0	31	84	6	81	43	6	9	40	1.63
42722696--42722862	43	3.9	43	80	3	176	29	26	17	26	1.97
42723312--42723373	19	3.4	19	86	4	56	33	9	16	40	1.81
42723323--42723399	19	3.8	19	80	11	91	33	6	19	40	1.77
42737852--42738022	85	2.0	85	85	2	227	28	11	18	42	1.85
42744948--42745017	3	23.3	3	94	0	122	64	0	2	32	1.08
42745073--42745123	20	2.5	21	70	6	50	35	1	3	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42745983--42746009	7	3.9	7	100	0	54	74	0	0	25	0.83
42749576--42750007	152	2.9	151	90	3	667	30	9	7	52	1.62
42750011--42750666	156	4.3	151	87	4	892	53	7	10	28	1.63
42755685--42755738	19	2.9	19	81	8	58	55	3	0	40	1.17
42755685--42755723	18	2.1	19	85	4	53	58	2	0	38	1.12
42755672--42755754	28	2.9	28	78	12	71	55	3	0	40	1.17
42764080--42764154	32	2.3	32	74	17	75	20	25	18	36	1.95
42766079--42766121	18	2.4	18	88	0	59	41	44	2	11	1.53
42766225--42766300	9	8.4	9	82	5	100	25	10	23	40	1.86
42773421--42773454	14	2.5	14	95	4	61	0	0	11	88	0.52
42776053--42776091	11	3.5	11	86	6	51	53	2	33	10	1.48
42780828--42780869	18	2.3	18	83	0	57	11	16	7	64	1.48
42783157--42783399	89	2.7	87	91	5	378	33	17	22	26	1.96
42783201--42783366	45	3.7	45	85	1	244	33	18	22	25	1.97
42783139--42783399	44	5.9	44	81	2	299	32	17	22	27	1.96
42783455--42783769	44	7.2	44	64	11	169	30	16	23	28	1.97
42783400--42783867	132	3.6	132	94	0	785	30	17	23	28	1.97
42783857--42784503	44	14.6	44	88	3	897	31	14	24	29	1.94
42783857--42784503	177	3.7	175	86	3	877	31	14	24	29	1.94
42783857--42784530	221	3.1	219	86	2	974	32	14	24	29	1.94
42785266--42785304	11	3.5	11	86	6	51	53	2	33	10	1.48
42796452--42796484	2	16.0	2	93	6	57	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42802563--42802589	5	5.4	5	100	0	54	77	0	0	22	0.76
42803344--42803395	24	2.2	24	89	0	77	55	9	1	32	1.43
42805528--42805696	87	1.9	87	85	5	234	36	15	12	35	1.85
42807423--42807459	18	2.1	17	90	5	56	43	8	0	48	1.32
42811065--42811102	20	1.9	20	100	0	76	31	10	28	28	1.90
42811234--42811450	65	3.1	70	62	19	166	34	4	7	54	1.48
42811165--42811445	135	2.1	136	97	2	537	33	4	7	53	1.52
42811207--42811411	65	3.1	65	63	21	161	32	6	9	51	1.59
42815220--42815282	30	2.1	30	96	0	117	26	3	12	57	1.51
42815304--42815337	16	2.1	16	88	0	50	35	2	11	50	1.54
42833476--42833562	45	1.9	45	92	0	147	32	13	10	43	1.78
42834886--42835161	138	2.0	138	98	0	534	40	17	19	23	1.91
42835274--42835337	30	2.1	31	91	2	103	28	26	6	39	1.80
42835284--42835330	15	3.1	15	73	11	51	29	21	8	40	1.83
42835798--42835834	19	1.9	19	89	10	58	48	5	2	43	1.40
42835798--42835835	20	1.9	19	89	5	58	50	5	2	42	1.39
42843250--42843827	286	2.0	287	99	0	1149	38	9	11	40	1.74
42847172--42847208	19	1.9	19	88	0	56	64	0	0	35	0.94
42847686--42847755	35	2.0	35	100	0	140	42	20	14	22	1.88
42847912--42847968	15	3.8	15	70	9	53	49	19	26	5	1.69
42848809--42848889	42	1.9	42	85	5	110	16	37	27	19	1.93
42848709--42848950	104	2.3	105	85	2	326	23	33	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42849733--42849765	15	2.1	16	88	5	50	27	24	0	48	1.51
42850829--42850915	45	1.9	45	88	4	131	47	10	17	25	1.79
42855693--42855745	19	2.7	20	73	5	54	33	7	11	47	1.68
42856538--42856631	42	2.2	42	92	0	161	36	20	20	23	1.95
42872502--42872873	113	3.3	112	72	9	380	28	19	16	34	1.94
42872402--42872875	226	2.1	226	94	2	837	29	20	16	33	1.94
42873119--42873156	20	1.9	20	94	0	67	50	7	13	28	1.69
42880937--42880978	14	3.1	14	75	25	54	52	0	2	45	1.13
42880937--42880989	26	2.1	26	89	3	81	52	0	3	43	1.19
42882922--42883097	63	2.8	63	83	1	219	23	26	26	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135