genome.fa.s8.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  83  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32310906--32310959	16	3.4	17	77	12	60	14	25	0	59	1.36
32321027--32321816	114	7.0	114	90	1	1196	25	22	27	24	2.00
32322081--32322130	22	2.3	21	86	6	64	16	0	48	36	1.46
32322080--32322132	15	3.6	14	82	14	63	15	0	45	39	1.46
32322624--32322779	43	3.6	43	85	0	231	17	17	30	34	1.93
32322843--32322884	22	1.9	22	90	0	66	42	28	19	9	1.82
32338203--32338346	74	2.0	70	88	10	211	28	3	4	63	1.29
32338296--32338334	11	3.8	11	80	19	57	33	0	0	66	0.92
32338299--32338331	10	3.4	10	83	8	50	33	0	0	66	0.92
32338535--32338560	13	2.0	13	100	0	52	53	7	0	38	1.30
32339198--32339242	22	2.0	22	82	0	54	55	0	6	37	1.26
32339845--32340114	43	6.3	43	78	4	233	29	29	18	22	1.98
32339845--32340114	86	3.2	85	78	2	265	29	29	18	22	1.98
32339845--32340094	129	1.9	128	82	5	308	28	29	19	22	1.98
32345570--32345610	21	1.9	22	85	5	57	39	39	0	21	1.54
32345803--32345844	16	2.5	17	92	7	68	45	0	0	54	0.99
32345977--32346016	21	1.9	21	89	0	62	30	47	0	22	1.52
32345990--32346020	14	2.2	14	94	0	53	32	48	0	19	1.49
32346003--32346086	21	4.1	20	71	15	73	36	35	1	26	1.64
32346105--32346165	22	2.7	24	78	12	67	42	31	1	24	1.64
32346258--32346633	41	9.1	41	93	2	621	32	30	21	16	1.95
32353160--32353407	104	2.4	104	84	2	309	20	31	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32354634--32354710	14	5.0	15	71	20	52	42	14	9	33	1.77
32354650--32354689	20	2.0	20	90	0	62	50	12	10	27	1.72
32354638--32354704	34	1.9	35	90	3	109	46	13	8	31	1.74
32356867--32356924	28	2.1	28	83	3	73	56	8	10	24	1.60
32362130--32362179	24	2.1	24	100	0	100	22	24	0	54	1.45
32365430--32365479	25	2.0	25	96	0	91	28	22	26	24	1.99
32368859--32369005	50	2.8	51	81	10	147	24	28	21	25	1.99
32374403--32374433	9	3.4	9	90	0	53	38	22	12	25	1.90
32377733--32377818	32	2.7	31	80	3	100	40	11	8	39	1.71
32378403--32378428	12	2.2	12	100	0	52	30	0	30	38	1.58
32380242--32380287	24	1.9	24	81	0	56	47	6	4	41	1.49
32382357--32382382	7	3.7	7	100	0	52	88	0	0	11	0.52
32382351--32382436	44	1.9	44	90	2	136	65	0	1	33	1.01
32387103--32387173	31	2.3	28	78	21	72	50	11	1	36	1.47
32387623--32387667	21	2.1	21	83	0	54	26	15	24	33	1.95
32389827--32389859	3	11.3	3	87	6	50	0	30	0	69	0.88
32393162--32393247	32	2.7	31	82	8	102	41	10	8	39	1.69
32393769--32393940	85	2.0	86	98	1	337	37	23	5	33	1.79
32394879--32394974	46	2.1	47	98	2	185	39	12	23	23	1.89
32395797--32395842	24	1.9	24	81	0	56	47	6	4	41	1.49
32397286--32397328	12	3.4	12	87	6	59	32	2	6	58	1.38
32399216--32399312	48	2.0	49	97	2	187	13	30	14	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32400556--32400599	17	2.6	17	96	0	79	29	0	9	61	1.27
32406011--32406101	45	2.0	45	85	2	121	37	28	6	27	1.82
32406082--32406117	16	2.2	16	100	0	72	38	36	0	25	1.56
32406243--32406298	27	2.1	27	100	0	112	30	26	17	25	1.97
32410112--32410166	27	2.0	28	83	13	71	38	7	3	50	1.48
32413050--32413093	19	2.3	20	84	7	56	27	20	11	40	1.86
32417670--32418384	132	5.4	132	91	1	1064	27	19	24	27	1.99
32420937--32420985	3	16.3	3	82	0	62	61	2	0	36	1.08
32421482--32421508	4	6.8	4	100	0	54	22	0	0	77	0.76
32421958--32422059	6	17.0	6	89	0	114	26	8	0	63	1.30
32426126--32426209	8	10.0	8	71	19	64	79	0	20	0	0.73
32426125--32426209	11	7.6	11	74	11	57	80	0	20	0	0.72
32426129--32426197	19	3.5	19	84	11	95	78	0	21	0	0.76
32426125--32426206	37	2.2	36	83	10	112	80	0	19	0	0.71
32427431--32427743	132	2.4	132	84	1	376	30	19	23	26	1.98
32427756--32428914	99	11.7	99	84	3	1334	31	20	21	27	1.98
32427748--32428914	297	3.9	297	86	3	1474	31	20	21	26	1.98
32427766--32428922	50	23.4	50	68	7	410	31	20	20	26	1.98
32428944--32429566	44	14.4	44	68	13	251	30	20	21	27	1.98
32428938--32429096	85	1.9	85	84	2	212	31	23	21	23	1.98
32428982--32429482	129	3.9	129	89	1	691	30	21	21	26	1.98
32429112--32429575	85	5.4	86	71	10	279	29	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32428944--32429522	129	4.5	127	85	5	664	30	20	21	26	1.98
32429281--32429666	173	2.2	174	81	5	444	31	18	22	28	1.97
32434118--32434218	44	2.3	44	87	0	148	27	22	12	36	1.91
32434199--32434584	44	8.8	44	82	1	342	30	20	16	31	1.95
32434151--32434634	132	3.7	132	80	4	447	29	20	15	33	1.94
32434196--32434634	88	5.0	88	81	2	414	30	20	15	33	1.94
32441362--32441475	41	2.8	41	94	1	203	28	21	22	26	1.99
32441773--32441926	75	2.1	75	82	2	184	40	20	7	31	1.81
32449662--32449708	21	2.2	21	84	0	67	23	38	29	8	1.84
32456321--32456360	20	2.0	20	85	0	53	52	0	0	47	1.00
32456342--32456376	17	2.0	17	88	5	52	71	0	2	25	1.00
32459853--32460015	89	1.8	88	82	12	208	24	12	11	52	1.71
32460172--32460212	18	2.2	18	86	4	55	34	2	2	60	1.23
32461761--32461810	20	2.5	20	86	0	73	18	6	34	42	1.74
32462602--32462840	127	1.9	127	79	5	268	35	12	17	35	1.87
32463485--32463555	37	1.9	37	83	11	92	61	1	7	29	1.30
32463494--32463550	18	3.1	18	73	9	53	63	1	7	28	1.30
32464166--32464198	13	2.4	14	90	5	50	3	12	0	84	0.72
32465072--32465480	45	9.1	44	81	8	475	31	24	15	28	1.95
32465067--32465480	90	4.6	90	91	0	639	31	24	15	28	1.95
32465598--32466153	50	11.2	50	64	5	196	26	23	20	29	1.99
32465487--32466191	99	7.1	98	83	2	777	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32465491--32466191	198	3.5	198	87	1	951	26	22	20	30	1.98
32467048--32467105	18	3.2	18	81	13	75	1	10	3	84	0.81
32467067--32467096	14	2.2	14	94	5	53	0	13	0	86	0.57
32472671--32472720	18	2.7	19	75	9	50	68	2	6	24	1.23
32478603--32478659	20	2.8	19	75	19	53	43	1	0	54	1.10
32478598--32478661	24	2.8	24	81	11	71	45	1	0	53	1.10
32478590--32478661	22	3.4	22	74	21	73	44	1	0	54	1.08
32479764--32479805	18	2.3	19	84	12	61	45	0	0	54	0.99
32479931--32480004	29	2.5	29	86	4	94	50	14	14	20	1.78
32483763--32483809	14	3.3	14	75	16	51	65	4	2	27	1.22
32484254--32484419	81	2.0	81	98	0	323	31	20	12	35	1.89
32485191--32485219	15	1.9	15	100	0	58	65	0	0	34	0.93
32485188--32485258	26	2.7	26	73	6	63	53	1	0	45	1.09
32490224--32490288	34	1.9	34	87	0	94	32	16	23	27	1.96
32493445--32493487	22	2.1	20	87	12	61	32	0	0	67	0.91
32493526--32493567	19	2.2	19	95	0	75	35	0	0	64	0.94
32504509--32504543	18	2.1	17	89	10	54	48	0	0	51	1.00
32506412--32506460	26	2.0	24	84	8	62	57	0	10	32	1.32
32506747--32506795	24	2.0	24	84	7	64	61	8	0	30	1.25
32507416--32507449	16	2.1	16	88	0	50	50	2	0	47	1.16
32507799--32507864	20	3.5	20	69	12	66	62	16	6	15	1.52
32507787--32507881	37	2.6	37	96	0	172	58	15	7	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32507786--32507890	17	5.8	17	70	12	66	56	16	6	20	1.63
32508052--32508091	8	5.2	8	88	11	66	12	12	50	25	1.75
32508052--32508090	14	2.6	14	92	8	60	10	12	51	25	1.71
32508056--32508113	22	2.7	22	84	5	66	12	8	51	27	1.68
32509035--32509110	27	2.8	27	89	0	125	17	23	38	21	1.93
32509127--32509167	19	2.2	19	95	0	73	31	0	17	51	1.46
32509393--32509433	19	2.2	19	95	0	73	51	17	0	31	1.46
32509450--32509513	27	2.4	27	97	0	119	20	39	23	17	1.92
32509569--32509627	17	3.3	17	76	19	66	52	3	0	44	1.17
32511469--32511509	4	10.2	4	100	0	82	24	0	24	51	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135