genome.fa.s8.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  87  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33380025--33380108	29	2.8	29	77	16	84	65	1	3	29	1.17
33380016--33380108	9	9.7	9	70	15	53	65	2	3	29	1.20
33380352--33380418	27	2.5	27	92	0	107	32	19	32	14	1.92
33380865--33380905	3	14.3	3	80	10	50	60	0	39	0	0.96
33380861--33380903	20	2.2	20	95	0	77	58	0	41	0	0.98
33380858--33380913	14	3.9	15	79	11	64	62	0	37	0	0.95
33381082--33381123	16	2.7	15	85	7	57	35	2	4	57	1.33
33384755--33384808	22	2.4	23	84	12	76	1	31	1	64	1.14
33384748--33384808	24	2.7	22	77	7	61	3	31	1	63	1.20
33387016--33387096	36	2.2	36	80	8	94	41	0	23	34	1.55
33391571--33391604	18	1.9	17	88	5	50	29	0	5	64	1.17
33403240--33403284	9	5.0	9	80	0	54	4	66	20	8	1.36
33403241--33403305	6	10.8	6	84	0	76	3	66	16	13	1.38
33403256--33403315	18	3.3	18	80	0	66	8	63	15	13	1.51
33407146--33407181	12	3.0	12	84	15	56	36	0	25	38	1.56
33407698--33407926	113	2.0	114	99	0	451	44	1	8	44	1.45
33409337--33409373	17	2.2	17	95	0	65	32	2	0	64	1.07
33412444--33412653	43	4.9	43	80	4	217	32	24	18	24	1.97
33412494--33412651	86	1.8	86	89	5	248	32	23	19	24	1.98
33418023--33418060	18	2.1	18	100	0	76	10	7	36	44	1.68
33420599--33420786	43	4.3	43	85	4	261	27	30	19	22	1.98
33420599--33420768	86	2.0	86	94	3	297	25	31	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33420595--33420785	87	2.2	86	88	2	303	27	29	18	23	1.98
33424494--33424525	16	2.0	16	100	0	64	25	6	6	62	1.42
33424924--33424950	2	13.5	2	100	0	54	48	0	0	51	1.00
33425486--33425798	41	7.6	41	85	2	405	29	28	23	18	1.98
33427550--33427677	40	3.3	40	68	14	133	53	6	1	39	1.36
33427556--33427676	37	3.3	37	61	16	88	52	6	1	39	1.38
33427540--33427693	75	2.0	76	98	1	301	50	5	1	43	1.33
33429719--33430102	37	10.2	37	78	6	362	36	18	16	28	1.92
33429726--33430066	112	3.0	111	82	5	368	36	18	16	28	1.93
33429719--33430095	149	2.5	147	84	3	450	36	18	16	28	1.93
33434992--33435039	15	3.3	14	74	8	51	27	2	0	70	0.98
33434990--33435047	28	2.0	28	90	6	89	27	1	1	68	1.08
33438993--33439051	29	2.0	29	83	6	75	44	15	1	38	1.56
33445387--33445415	14	2.0	15	93	6	51	58	6	0	34	1.25
33452297--33452617	174	1.8	175	82	3	414	41	23	8	26	1.83
33461101--33461227	61	2.1	61	85	2	166	40	13	6	39	1.70
33461118--33461240	61	2.0	61	84	6	160	39	13	6	40	1.70
33462309--33462403	36	2.8	33	76	10	82	62	7	5	25	1.43
33464308--33464337	15	1.9	15	93	6	51	56	0	0	43	0.99
33468440--33468999	294	1.9	294	97	0	1057	53	13	15	17	1.72
33469716--33469748	17	1.9	17	93	0	57	21	21	48	9	1.77
33470662--33470708	24	2.0	24	83	8	60	51	8	6	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33478043--33478082	17	2.3	18	87	12	57	45	0	0	55	0.99
33478121--33478295	87	2.0	89	83	4	221	38	7	9	44	1.66
33478815--33478999	43	4.3	43	88	1	264	24	30	19	25	1.98
33480519--33480564	21	2.2	21	92	0	74	39	43	0	17	1.49
33480519--33480579	21	2.9	20	75	18	61	39	40	0	19	1.52
33480793--33480857	22	3.0	22	79	4	78	36	38	0	24	1.56
33481114--33481357	41	5.9	41	88	0	335	33	25	21	19	1.97
33481398--33481503	55	1.9	56	88	1	160	17	19	22	39	1.92
33483694--33483746	13	4.1	13	73	9	54	30	5	24	39	1.78
33484480--33484519	19	2.1	19	85	0	53	30	12	22	35	1.91
33489470--33489539	31	2.3	31	82	5	88	34	10	11	44	1.74
33489577--33489603	13	2.1	13	100	0	54	29	14	18	37	1.91
33492594--33492667	7	10.7	7	79	2	78	20	1	32	45	1.59
33492586--33492667	21	4.0	21	80	6	96	20	1	31	46	1.59
33492884--33492938	27	2.1	25	81	18	60	45	5	1	47	1.36
33492926--33492955	8	3.8	8	100	0	60	73	0	0	26	0.84
33492986--33493619	148	4.3	150	80	7	550	27	17	20	34	1.95
33494141--33494175	14	2.5	14	95	0	61	17	8	17	57	1.64
33495202--33495267	9	7.8	9	78	13	77	45	18	1	34	1.59
33495191--33495263	16	4.4	16	71	19	60	49	17	1	31	1.56
33495191--33495278	25	3.5	25	88	0	122	48	18	1	31	1.55
33495477--33495557	39	2.1	39	97	0	153	30	18	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33501130--33501374	43	5.7	43	86	2	334	27	19	28	24	1.98
33501114--33501362	85	2.9	86	86	3	342	29	18	28	23	1.98
33509789--33509910	25	4.9	25	68	9	79	36	15	25	22	1.93
33514876--33515299	43	9.9	43	90	0	614	23	34	18	23	1.96
33517805--33517844	16	2.5	16	87	0	53	22	17	47	12	1.81
33522870--33522923	21	2.5	22	84	3	65	61	7	1	29	1.34
33531172--33531380	90	2.3	89	82	4	249	28	5	14	51	1.65
33531785--33531871	42	2.1	42	95	0	156	22	20	33	22	1.97
33533059--33533090	15	2.1	15	94	0	55	34	9	12	43	1.75
33533169--33533206	19	2.1	19	90	5	60	42	5	2	50	1.39
33533089--33533422	165	2.0	168	91	1	539	37	5	6	51	1.50
33537095--33537133	15	2.6	15	83	0	51	25	30	7	35	1.84
33537869--33538065	108	1.8	110	81	6	249	31	22	15	30	1.95
33542124--33542180	29	1.9	30	85	3	80	54	14	1	29	1.50
33554994--33555100	45	2.4	45	85	6	137	14	12	25	48	1.77
33557888--33558119	20	13.1	17	71	21	119	43	3	4	48	1.39
33557896--33558123	69	3.3	69	94	1	379	44	3	3	48	1.38
33562286--33562314	5	5.8	5	100	0	58	20	0	0	79	0.74
33563075--33563122	21	2.3	21	85	0	60	16	39	18	25	1.91
33563084--33563124	21	2.0	21	90	0	64	12	36	24	26	1.91
33565953--33565980	5	5.6	5	100	0	56	17	0	0	82	0.68
33566035--33566091	30	1.9	30	82	10	73	12	29	3	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33569309--33569512	101	2.0	102	99	0	401	33	6	19	40	1.78
33569589--33569644	29	2.0	29	82	10	71	12	30	3	53	1.55
33569588--33569655	29	2.3	29	78	12	68	10	29	5	54	1.58
33571703--33571739	18	2.1	18	94	0	65	24	0	24	51	1.49
33572085--33572171	39	2.2	39	87	6	122	35	4	25	34	1.77
33575705--33575853	68	2.2	68	83	0	181	27	20	32	19	1.97
33582443--33582471	14	2.0	15	93	6	51	31	0	20	48	1.50
33583516--33583558	21	2.0	21	100	0	86	41	0	39	18	1.51
33583519--33583572	21	2.6	21	88	8	76	46	0	37	16	1.48
33586573--33586601	11	2.6	11	100	0	58	48	6	0	44	1.29
33586702--33586760	21	2.7	22	79	10	68	62	6	0	30	1.21
33593376--33593433	30	1.9	30	89	0	89	10	27	41	20	1.85
33595338--33595377	18	2.1	19	86	9	55	55	0	2	42	1.13
33598659--33598692	14	2.4	14	100	0	68	55	5	5	32	1.48
33603743--33603830	42	2.1	42	85	4	115	28	20	32	18	1.96
33609881--33609955	35	2.1	35	95	4	134	37	9	21	32	1.85
33614489--33614551	20	3.2	20	67	0	54	31	20	36	11	1.88
33614466--33614708	40	6.1	39	81	7	220	34	17	27	19	1.94
33615182--33615237	20	2.8	19	78	7	58	55	16	21	7	1.64
33627036--33627082	17	2.8	16	90	6	67	46	0	4	48	1.21
33627536--33627622	41	2.1	41	93	0	147	39	17	14	28	1.89
33628007--33628200	41	5.0	41	76	16	184	27	28	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33628006--33628200	73	2.6	76	83	8	254	27	28	18	24	1.98
33628707--33628748	3	14.0	3	100	0	84	66	0	0	33	0.92
33633108--33633133	5	5.2	5	100	0	52	38	19	19	23	1.93
33633082--33633133	26	2.0	26	81	7	61	38	15	23	23	1.92
33633481--33633511	16	1.9	16	93	0	53	41	0	29	29	1.56
33633844--33633880	9	4.1	9	92	0	65	29	10	13	45	1.77
33633938--33633973	14	2.6	14	95	0	63	25	25	13	36	1.93
33639761--33639810	24	2.0	26	84	7	68	50	0	4	46	1.20
33639999--33640028	15	2.0	15	100	0	60	33	13	26	26	1.93
33643718--33643751	4	8.5	4	100	0	68	26	0	23	50	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135