genome.fa.s8.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  122  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44181845--44183071	228	5.5	225	88	3	1707	25	27	16	30	1.97
44181840--44183071	450	2.8	450	88	3	1798	25	27	16	30	1.97
44183600--44183952	176	2.0	174	82	2	429	35	18	16	28	1.93
44183986--44184042	29	2.0	29	89	0	87	28	17	8	45	1.78
44184932--44185117	62	3.2	62	64	25	177	25	11	16	46	1.80
44184920--44185169	112	2.2	112	98	0	482	27	10	18	44	1.82
44185993--44186041	23	2.3	21	89	10	73	22	10	34	32	1.88
44195484--44195529	23	2.0	23	86	0	65	13	28	26	32	1.93
44200541--44200758	112	1.9	113	95	1	393	51	7	5	35	1.54
44213540--44213605	28	2.3	29	89	5	100	40	9	1	48	1.44
44216914--44216951	18	2.1	18	95	0	67	13	47	5	34	1.65
44216917--44216958	18	2.3	18	87	0	66	19	50	2	28	1.60
44217688--44217722	3	11.7	3	87	0	52	62	5	0	31	1.18
44217965--44218025	27	2.3	27	88	0	95	22	32	26	18	1.97
44218116--44218191	30	2.6	30	85	6	102	28	0	3	67	1.09
44227172--44227314	33	4.3	33	100	0	286	45	16	18	18	1.86
44229690--44230543	222	3.8	223	85	2	1154	24	27	16	31	1.96
44231311--44231356	20	2.3	20	85	14	60	26	13	28	32	1.93
44231338--44231393	29	1.9	29	81	0	67	14	10	37	37	1.81
44231400--44231452	21	2.5	21	84	0	70	20	3	28	47	1.68
44235289--44235337	19	2.6	19	86	0	62	55	6	0	38	1.25
44236805--44237286	240	2.0	241	99	0	948	41	6	8	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44250944--44250983	21	1.9	21	89	0	62	35	0	2	62	1.09
44251215--44251248	3	11.3	3	100	0	68	32	0	0	67	0.91
44263494--44263534	9	4.4	9	85	14	57	26	2	0	70	0.99
44263501--44263566	11	6.4	11	70	16	52	27	3	1	68	1.13
44263494--44263566	9	7.3	10	75	14	55	28	2	1	67	1.13
44263578--44263649	20	3.7	19	78	14	76	33	0	9	56	1.32
44275301--44275361	31	2.0	31	96	0	113	26	14	9	49	1.75
44275822--44275975	76	2.0	76	92	2	256	31	14	12	40	1.85
44277097--44277237	70	2.0	70	98	0	273	22	21	11	43	1.84
44286900--44287030	50	2.6	50	97	0	244	29	25	17	28	1.97
44291019--44291118	50	2.0	51	96	2	184	33	31	18	18	1.94
44294944--44294968	12	2.1	12	100	0	50	20	0	24	56	1.43
44301338--44301407	32	2.2	32	76	16	74	34	0	2	62	1.10
44306031--44306070	21	2.0	21	90	5	64	45	0	2	52	1.14
44309386--44309458	10	7.5	10	79	11	62	46	0	0	53	1.00
44309416--44309453	5	7.6	5	100	0	76	39	0	0	60	0.97
44309572--44309612	3	13.7	3	100	0	82	34	0	0	65	0.93
44310860--44310961	45	2.3	45	87	5	152	22	14	17	45	1.85
44315197--44315240	22	2.0	23	81	4	54	70	4	4	20	1.23
44316047--44316105	23	2.6	22	74	12	57	49	1	5	44	1.34
44316045--44316107	25	2.7	23	73	11	65	49	1	4	44	1.33
44316133--44316167	12	2.9	12	86	0	52	57	2	2	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44316394--44316428	12	2.9	12	86	0	52	57	2	2	37	1.29
44321034--44321061	13	2.2	13	100	0	56	21	10	14	53	1.70
44331476--44332938	732	2.0	732	99	0	2908	36	9	18	35	1.84
44338402--44338465	13	4.9	13	82	0	83	37	20	6	35	1.78
44338401--44338465	26	2.5	26	84	2	94	36	20	6	36	1.77
44346827--44346911	43	2.0	43	88	0	125	16	3	14	65	1.39
44347006--44347345	110	3.1	108	91	3	506	32	16	16	35	1.91
44349451--44349492	20	2.1	20	86	0	57	11	21	0	66	1.23
44349737--44349764	10	2.8	10	100	0	56	60	0	7	32	1.24
44351799--44351903	52	2.0	53	98	1	203	32	21	11	34	1.89
44352267--44352312	23	2.0	23	86	0	65	34	28	26	10	1.90
44355737--44355790	19	2.9	19	82	17	69	70	0	9	20	1.14
44355733--44355811	23	3.8	20	77	21	67	72	0	6	21	1.07
44355782--44355812	15	2.1	14	94	5	53	77	0	0	22	0.77
44355776--44355813	18	2.2	17	86	13	60	78	0	0	21	0.74
44358039--44358738	350	2.0	350	98	0	1355	29	21	19	30	1.97
44367075--44367114	19	2.2	19	86	4	55	72	0	20	7	1.08
44375346--44375380	3	11.7	3	100	0	70	68	0	0	31	0.90
44385043--44385078	15	2.5	15	91	8	58	36	0	0	63	0.94
44385042--44385078	13	2.6	14	91	8	58	35	0	0	64	0.94
44385150--44385178	15	1.9	15	100	0	58	41	0	10	48	1.37
44385185--44385264	40	2.0	40	97	0	151	53	5	6	35	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44390133--44390168	15	2.5	15	91	8	58	36	0	0	63	0.94
44390132--44390168	13	2.6	14	91	8	58	35	0	0	64	0.94
44390240--44390268	15	1.9	15	100	0	58	41	0	10	48	1.37
44390546--44390570	7	3.6	7	100	0	50	48	0	0	52	1.00
44394145--44394171	12	2.2	12	100	0	54	22	22	14	40	1.90
44399971--44400012	16	2.6	17	81	7	52	38	0	16	45	1.48
44401320--44401377	6	9.7	6	86	0	62	27	6	15	50	1.70
44403910--44403986	29	2.7	29	93	0	136	23	15	18	42	1.88
44404447--44405072	274	2.3	273	83	4	769	35	14	10	40	1.80
44419722--44419759	3	13.0	3	88	5	60	34	2	31	31	1.72
44441223--44441266	6	7.2	6	87	5	52	40	15	36	6	1.74
44441225--44441266	19	2.3	18	91	4	66	40	16	35	7	1.76
44441235--44441278	19	2.3	19	88	7	63	40	15	34	9	1.79
44441636--44441661	3	8.7	3	100	0	52	0	34	0	65	0.93
44441916--44441944	12	2.5	12	94	5	51	0	44	6	48	1.29
44442546--44442571	2	13.0	2	100	0	52	0	50	0	50	1.00
44442579--44442605	6	4.5	6	100	0	54	14	0	0	85	0.61
44443362--44443394	17	2.1	16	88	11	50	66	0	0	33	0.92
44444043--44444089	20	2.4	19	78	3	58	17	0	6	76	0.98
44447901--44447968	26	2.6	25	77	6	64	20	8	5	64	1.43
44448083--44448121	20	1.9	21	89	5	62	33	23	12	30	1.92
44454217--44454264	2	24.0	2	87	8	71	45	0	4	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44454208--44454263	18	3.2	18	90	7	89	42	0	7	50	1.30
44465069--44465097	14	2.0	15	93	6	51	17	0	0	82	0.66
44467898--44467967	35	2.0	35	97	0	131	35	14	5	44	1.69
44469335--44469400	31	2.1	31	88	0	96	22	10	22	43	1.84
44471513--44471553	15	2.8	15	82	14	50	53	4	7	34	1.50
44475151--44475363	117	1.8	116	86	3	311	33	22	12	31	1.91
44490163--44490191	3	9.7	3	100	0	58	68	0	0	31	0.89
44491428--44491487	25	2.3	27	82	8	79	40	1	3	55	1.27
44499520--44499560	20	2.0	21	85	4	57	41	0	12	46	1.41
44512331--44512383	25	2.1	25	89	6	81	26	22	18	32	1.97
44518697--44519059	199	1.8	199	84	0	501	37	14	19	28	1.91
44520434--44520476	23	2.0	22	86	9	61	41	4	9	44	1.57
44520570--44520626	26	2.2	26	81	9	62	66	5	28	0	1.13
44521228--44521361	39	3.4	38	73	12	112	22	20	28	28	1.99
44527105--44527157	16	3.3	16	76	10	63	35	24	5	33	1.79
44527376--44527478	37	2.6	39	83	6	129	36	24	15	23	1.93
44527611--44527670	2	30.0	2	89	0	93	53	45	1	0	1.10
44529889--44529926	3	12.7	3	100	0	76	65	0	0	34	0.93
44537952--44537979	13	2.2	13	100	0	56	7	28	14	50	1.69
44540940--44541072	55	2.4	55	82	3	151	26	26	23	24	2.00
44565217--44565255	16	2.4	17	83	16	55	66	0	0	33	0.92
44565195--44565255	24	2.5	24	83	2	68	63	0	3	32	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44571281--44571418	72	2.0	68	87	5	195	48	5	3	42	1.42
44571281--44571385	36	2.9	36	72	10	106	49	6	1	41	1.40
44571290--44571437	68	2.1	71	80	7	160	50	4	3	42	1.38
44576139--44576250	21	5.3	21	75	4	100	12	24	16	46	1.82
44576137--44576247	42	2.6	43	78	7	111	12	25	16	45	1.82
44579125--44579243	52	2.3	52	86	9	165	42	5	22	29	1.77
44580152--44580197	22	2.1	22	84	8	58	52	13	6	28	1.65
44580430--44580456	10	2.7	10	100	0	54	70	0	0	29	0.88
44582043--44582093	18	2.8	18	84	0	75	13	37	29	19	1.90
44586264--44586302	20	2.0	20	94	0	69	15	23	7	53	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135