genome.fa.s8.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  99  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36818479--36818537	8	6.8	8	76	17	55	61	1	1	35	1.16
36818623--36818666	21	2.2	20	87	4	61	20	4	4	70	1.23
36818763--36818818	19	2.8	19	81	10	60	66	1	8	23	1.30
36818766--36818819	20	2.8	19	78	13	56	64	1	7	25	1.30
36818836--36818881	20	2.3	19	78	10	56	26	8	2	63	1.35
36823350--36823464	43	2.7	42	84	8	126	28	26	17	26	1.98
36826257--36826285	7	4.1	7	100	0	58	41	0	27	31	1.56
36826858--36827062	26	7.9	26	81	1	187	19	13	27	39	1.90
36837182--36837236	29	1.9	28	82	10	67	36	7	10	45	1.67
36843458--36843492	6	5.8	6	100	0	70	82	0	17	0	0.66
36845080--36845146	32	2.1	31	86	8	91	38	4	0	56	1.19
36850156--36850228	32	2.3	32	85	4	94	54	5	2	36	1.38
36850641--36850686	21	2.3	21	88	7	69	41	10	10	36	1.75
36850673--36850698	12	2.2	12	100	0	52	42	15	7	34	1.75
36856413--36857095	44	15.5	44	75	5	558	27	15	26	30	1.96
36856413--36857084	132	5.1	132	94	0	1119	27	15	27	29	1.96
36856413--36857087	265	2.6	265	93	0	1127	27	15	26	29	1.96
36857191--36857325	43	3.1	43	69	4	126	25	31	25	17	1.97
36857078--36857393	88	3.6	87	93	0	508	26	29	24	19	1.98
36857217--36857360	44	3.3	42	67	12	110	25	29	24	21	1.99
36857394--36857524	68	1.9	68	84	3	174	23	20	25	29	1.99
36857457--36857582	44	2.9	43	79	9	128	25	16	29	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36858247--36858322	21	3.7	21	91	3	111	36	9	15	38	1.80
36858267--36858345	21	3.6	24	86	6	73	35	8	16	39	1.80
36861185--36861277	21	4.4	21	89	8	120	39	15	8	36	1.78
36862039--36862084	20	2.3	20	92	0	74	15	28	19	36	1.92
36864987--36865093	41	2.6	41	88	2	153	22	18	26	32	1.97
36865019--36865154	41	3.3	41	84	0	164	23	19	25	32	1.97
36865224--36865248	2	12.5	2	100	0	50	48	0	0	52	1.00
36868553--36868609	5	11.0	5	78	14	53	40	7	17	35	1.77
36868532--36868616	27	3.1	27	69	12	66	40	7	16	36	1.76
36871190--36871230	21	2.0	21	85	0	55	39	17	2	41	1.62
36874489--36874544	28	2.0	28	100	0	112	42	25	10	21	1.85
36874718--36874752	18	2.0	18	88	5	54	31	25	17	25	1.97
36874756--36875060	35	8.7	35	81	4	217	23	16	28	31	1.96
36874794--36875096	70	4.3	70	78	2	225	23	14	29	32	1.95
36875121--36875225	33	3.2	33	82	5	131	39	23	15	21	1.92
36875232--36875291	22	2.7	22	76	0	57	33	13	20	33	1.91
36877106--36877168	30	2.2	29	86	11	85	15	28	3	52	1.58
36880491--36880586	41	2.4	41	91	5	151	30	18	18	32	1.95
36883660--36883718	21	2.8	22	80	10	61	15	8	5	71	1.28
36883667--36883701	16	2.2	16	89	0	52	17	5	0	77	0.96
36884271--36884313	22	2.0	22	85	0	59	39	18	0	41	1.51
36884539--36884623	25	3.2	25	67	20	73	43	8	16	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36884530--36884641	55	2.0	55	100	0	224	39	8	17	33	1.81
36901389--36901455	5	13.4	5	100	0	134	19	0	0	80	0.71
36905346--36905439	20	4.8	20	71	13	61	31	2	7	58	1.38
36905871--36905906	16	2.2	16	100	0	72	25	0	36	38	1.56
36906142--36906176	18	2.0	17	88	5	52	54	0	0	45	0.99
36917847--36917903	19	3.1	19	80	7	64	56	3	0	40	1.17
36918589--36918627	15	2.6	15	95	0	69	30	38	20	10	1.86
36927198--36927256	29	2.0	30	83	3	75	50	6	5	37	1.51
36930424--36930477	26	2.1	26	82	0	63	40	0	1	57	1.09
36943412--36943458	22	2.1	22	96	0	85	25	34	0	40	1.56
36943412--36943510	52	1.9	52	93	0	171	29	31	0	39	1.57
36943463--36943513	22	2.3	22	86	6	68	31	31	0	37	1.58
36943547--36943612	31	2.2	31	91	2	107	31	1	0	66	1.01
36943703--36943736	15	2.3	15	90	5	52	26	0	5	67	1.13
36950593--36950995	125	3.2	125	89	5	588	32	22	15	30	1.94
36950998--36951152	51	3.0	51	85	6	215	38	28	9	24	1.86
36953860--36953914	28	2.0	29	89	7	87	56	1	9	32	1.41
36954757--36954810	11	4.8	12	84	15	71	25	31	0	42	1.55
36954872--36954902	16	1.9	16	93	0	53	58	0	0	41	0.98
36955445--36955473	15	1.9	15	100	0	58	34	0	51	13	1.42
36984413--36984461	18	2.5	20	81	15	59	16	16	40	26	1.89
36987849--36987902	28	2.0	27	85	10	74	16	22	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36998430--36998457	10	2.8	10	100	0	56	42	0	21	35	1.53
37002864--37002957	12	8.2	11	70	15	57	73	4	15	6	1.20
37006526--37006558	12	2.8	12	90	9	50	75	0	15	9	1.03
37006587--37006621	17	1.9	18	88	11	54	71	0	28	0	0.86
37007477--37007595	37	3.1	39	73	16	113	26	15	21	36	1.93
37021472--37021498	3	9.0	3	100	0	54	66	0	33	0	0.92
37021669--37021699	3	10.3	3	92	0	53	3	29	0	67	1.06
37022371--37022405	2	17.5	2	100	0	70	48	0	0	51	1.00
37025513--37025581	22	3.1	22	79	8	86	43	17	21	17	1.88
37028040--37028072	13	2.6	13	90	4	50	69	0	3	27	1.03
37028104--37028145	22	1.9	22	90	0	66	50	2	7	40	1.43
37033400--37033592	98	2.0	98	89	0	296	29	11	23	36	1.90
37046143--37046575	45	9.7	46	70	15	216	29	21	22	26	1.99
37046230--37046350	44	2.8	43	80	6	120	31	21	19	28	1.97
37046334--37046525	95	2.0	95	92	2	323	29	20	23	26	1.99
37046541--37046709	66	2.6	66	96	0	311	29	21	24	24	1.99
37048618--37048811	98	2.0	98	91	0	316	27	8	24	39	1.85
37056324--37056366	12	3.6	11	81	12	50	65	4	4	25	1.32
37062239--37062509	114	2.4	114	94	0	470	37	18	18	25	1.94
37062239--37062561	114	2.8	111	85	8	372	35	19	20	24	1.95
37063244--37063290	21	2.2	22	84	3	60	21	6	27	44	1.76
37063357--37063420	14	4.6	14	75	7	58	21	1	34	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37063357--37063420	28	2.3	28	77	0	74	21	1	34	42	1.63
37063913--37063941	15	1.9	15	100	0	58	37	0	13	48	1.43
37063895--37063964	16	3.9	16	69	25	50	41	0	10	48	1.36
37063937--37063987	25	2.1	24	85	3	66	47	0	5	47	1.26
37064647--37064675	15	1.9	15	100	0	58	37	0	13	48	1.43
37064629--37064698	16	3.9	16	69	25	50	41	0	10	48	1.36
37064671--37064721	25	2.1	24	85	3	66	47	0	5	47	1.26
37070085--37070392	43	7.3	42	72	9	196	26	19	24	29	1.98
37070085--37070228	45	3.3	44	81	8	152	29	17	26	26	1.97
37070275--37070385	40	2.8	40	81	1	123	27	22	19	29	1.98
37070199--37070385	84	2.3	82	81	3	196	24	19	22	32	1.98
37070199--37070392	41	4.7	40	75	5	163	24	19	23	32	1.97
37072222--37072410	43	4.4	43	87	2	263	26	32	19	21	1.97
37073877--37073917	20	2.0	20	100	0	82	41	19	4	34	1.73
37076557--37076899	41	8.4	40	82	5	375	34	26	18	19	1.95
37076557--37076905	82	4.3	82	83	6	420	34	26	18	19	1.95
37076557--37076899	123	2.8	122	83	6	424	34	26	18	19	1.95
37076957--37077071	40	2.9	40	84	5	146	20	23	21	34	1.96
37077647--37077685	18	2.2	18	95	0	69	56	5	12	25	1.57
37096122--37096146	8	3.1	8	100	0	50	28	12	36	24	1.91
37097052--37097397	41	8.4	41	100	0	692	21	19	23	34	1.96
37105443--37105547	49	2.1	49	94	1	183	25	10	21	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37106538--37106567	15	2.0	15	93	0	51	56	13	0	30	1.37
37116519--37116577	20	3.0	20	78	9	75	38	25	22	13	1.90
37116523--37116589	20	3.3	20	78	0	62	41	25	20	11	1.87
37121329--37121368	18	2.3	17	87	12	55	55	0	40	5	1.22
37128148--37128413	26	10.3	26	74	4	189	38	28	14	18	1.90
37128178--37128395	78	2.8	76	80	4	215	40	27	14	17	1.88
37131307--37131381	38	2.0	38	100	0	150	40	18	10	30	1.85
37136143--37136246	26	4.0	25	80	6	111	40	26	12	20	1.88
37139926--37139954	13	2.1	14	93	6	51	75	0	0	24	0.80
37140702--37140732	3	10.3	3	100	0	62	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135