genome.fa.s8.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  80  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31369614--31369662	21	2.4	21	89	3	73	22	26	8	42	1.81
31369835--31369933	21	4.8	21	76	9	105	45	16	23	15	1.84
31370083--31370121	17	2.3	17	91	8	62	51	20	0	28	1.48
31377343--31377420	31	2.5	31	95	4	138	34	6	6	52	1.53
31388790--31389017	89	2.6	89	94	0	393	36	15	17	30	1.90
31391430--31391478	22	2.3	22	82	10	57	48	2	0	48	1.12
31392438--31392472	13	2.5	15	90	9	56	85	11	2	0	0.69
31392436--31392473	14	2.6	14	84	15	51	86	10	2	0	0.66
31393852--31394039	43	4.3	45	79	4	213	28	15	27	28	1.96
31393852--31394039	88	2.1	88	99	0	367	28	15	27	28	1.96
31394105--31394586	50	9.6	50	67	2	268	30	21	20	26	1.98
31394088--31394647	100	5.6	100	84	1	683	30	21	21	25	1.99
31394711--31394954	44	5.7	43	70	17	177	34	23	18	22	1.96
31394656--31394954	127	2.4	127	92	1	492	35	23	18	23	1.96
31394975--31395197	40	5.3	40	74	11	196	32	23	21	22	1.98
31396822--31396864	20	2.2	20	92	8	72	44	18	0	37	1.50
31404979--31405031	16	3.5	16	76	23	60	39	3	3	52	1.37
31406659--31406709	23	2.2	23	89	0	75	41	19	9	29	1.84
31428710--31429019	167	1.8	171	84	5	430	35	17	11	34	1.87
31431598--31431722	25	4.5	26	71	19	92	45	18	34	1	1.59
31433696--31433742	21	2.2	21	81	7	60	48	17	12	21	1.79
31434959--31434997	20	1.9	20	84	5	51	46	17	2	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31435756--31435892	42	3.3	42	83	2	150	45	17	21	15	1.84
31435811--31435872	21	3.0	21	76	7	72	50	19	19	11	1.77
31441994--31442153	21	7.6	21	68	8	74	44	17	21	16	1.87
31441996--31442109	42	2.7	41	85	4	140	46	18	20	14	1.84
31444716--31444764	13	3.6	13	78	10	62	55	0	8	36	1.30
31444696--31444779	28	3.0	28	92	1	132	53	0	7	39	1.28
31444700--31444751	14	3.5	15	76	12	63	55	0	5	38	1.24
31448394--31448418	11	2.3	11	100	0	50	24	0	12	64	1.27
31448707--31448749	21	2.0	21	86	8	61	34	0	6	58	1.25
31448766--31448810	18	2.6	18	85	3	56	42	0	2	55	1.12
31448732--31448913	59	3.1	59	65	21	139	41	1	4	51	1.33
31449145--31449198	16	3.4	16	86	0	81	25	31	3	38	1.74
31449483--31449521	21	1.9	20	84	5	51	48	2	5	43	1.38
31450352--31450396	11	4.4	11	81	16	60	42	4	0	53	1.21
31451151--31451191	20	2.0	20	86	9	57	60	4	0	34	1.18
31451671--31451704	18	1.9	17	88	5	50	38	5	14	41	1.70
31456291--31456317	2	13.5	2	100	0	54	0	51	0	48	1.00
31469639--31469675	19	2.1	19	90	10	60	40	0	0	59	0.97
31470675--31470716	4	10.5	4	100	0	84	50	26	0	23	1.50
31472758--31472824	31	2.2	30	80	17	77	40	0	5	53	1.25
31472847--31472917	9	7.7	9	73	20	58	32	0	2	64	1.08
31472847--31472919	18	4.0	17	77	13	74	32	0	2	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31474893--31475287	115	3.6	114	88	8	602	24	17	15	41	1.89
31483948--31484023	37	2.0	39	82	10	95	53	6	1	38	1.35
31500702--31500772	35	2.0	35	100	0	142	35	14	22	28	1.93
31503649--31503691	21	2.0	21	82	8	52	20	34	0	44	1.52
31503987--31504024	20	1.9	20	88	0	58	26	28	0	44	1.54
31507755--31507788	16	2.1	16	94	0	59	35	0	0	64	0.94
31511580--31511625	24	1.9	24	95	0	83	47	6	0	45	1.28
31511702--31511768	27	2.5	27	90	0	98	29	26	26	16	1.97
31511814--31511938	4	31.0	4	77	16	109	70	0	29	0	0.88
31511815--31511944	34	4.0	31	75	15	122	70	0	29	0	0.87
31511819--31511979	84	1.9	89	86	10	219	70	0	29	0	0.88
31511824--31512004	84	2.2	82	83	7	217	69	0	30	0	0.89
31513137--31513202	23	2.6	25	86	9	91	48	0	9	42	1.35
31516988--31517082	29	3.2	29	62	11	75	38	14	11	34	1.83
31517008--31517122	31	3.8	31	68	14	96	32	14	10	42	1.80
31516969--31517104	60	2.3	60	97	1	256	33	12	11	42	1.79
31526726--31526776	23	2.2	24	85	3	68	27	3	3	64	1.28
31527318--31527363	20	2.3	20	85	3	58	34	6	13	45	1.69
31528226--31528278	21	2.5	21	90	0	79	32	37	7	22	1.82
31537706--31537732	3	9.0	3	100	0	54	33	0	0	66	0.92
31537723--31537809	42	2.0	43	97	2	167	28	6	6	57	1.51
31541024--31541125	46	2.2	46	96	0	186	23	21	12	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31548860--31548918	23	2.5	23	75	10	57	61	1	1	35	1.16
31554956--31554981	6	4.3	6	100	0	52	15	69	15	0	1.20
31561762--31561841	15	5.2	16	72	11	78	27	20	6	46	1.74
31561746--31561839	30	3.1	30	89	1	134	27	22	6	43	1.77
31567371--31567396	8	3.2	8	100	0	52	26	0	0	73	0.84
31570885--31570920	15	2.3	15	90	4	54	66	0	16	16	1.25
31577128--31577158	13	2.4	13	94	0	53	32	0	12	54	1.38
31581020--31581180	58	2.7	59	83	6	193	35	22	3	37	1.73
31581013--31581171	30	5.4	29	81	6	187	33	23	3	38	1.73
31581013--31581180	87	1.9	87	84	7	225	34	22	4	38	1.74
31581637--31581691	4	14.5	4	82	17	73	74	0	25	0	0.82
31581641--31581690	15	3.3	15	84	15	68	74	0	26	0	0.83
31581638--31581700	7	8.6	7	86	8	81	71	0	28	0	0.86
31581812--31581861	20	2.4	20	86	6	64	80	10	10	0	0.92
31581812--31581861	21	2.3	21	86	10	66	80	10	10	0	0.92
31581800--31581849	25	2.0	26	88	4	75	76	12	12	0	1.04
31582452--31582757	18	16.4	18	71	16	144	33	12	9	43	1.76
31582445--31582530	37	2.3	38	87	2	120	39	10	8	41	1.69
31582451--31582755	19	16.3	19	71	16	165	34	12	9	43	1.76
31582452--31582560	17	6.0	18	72	18	75	33	13	9	44	1.76
31582535--31582586	27	2.0	25	85	7	68	21	13	13	51	1.74
31582688--31582773	36	2.3	38	83	13	108	32	11	10	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31585387--31585481	30	3.2	29	82	8	111	35	22	2	40	1.66
31587660--31587829	87	2.0	86	95	1	304	27	14	14	44	1.83
31587824--31587910	43	2.0	43	84	4	113	40	21	1	36	1.61
31590936--31590989	25	2.2	25	96	0	99	48	14	7	29	1.71
31590984--31591194	113	1.9	113	88	3	318	45	11	3	39	1.58
31599679--31599716	2	20.0	2	84	10	53	47	0	0	52	1.00
31601299--31601369	5	14.4	5	98	1	135	40	0	0	59	0.98
31603148--31603185	19	2.0	19	85	10	51	36	0	5	57	1.21
31603410--31603447	20	1.9	20	88	0	58	26	7	5	60	1.46
31624423--31624491	31	2.3	30	83	11	88	30	8	11	49	1.69
31625492--31625571	29	2.6	30	84	5	90	52	12	3	31	1.57
31631447--31631491	14	3.3	14	72	27	51	26	8	4	60	1.46
31631437--31631491	27	2.0	28	96	3	103	29	7	3	60	1.41
31631438--31631506	27	2.7	25	83	16	88	28	7	2	60	1.38
31634009--31634033	6	4.2	6	100	0	50	16	20	48	16	1.82
31637961--31637998	20	1.9	20	88	0	58	52	0	10	36	1.36
31640470--31640499	13	2.3	13	100	0	60	40	43	0	16	1.48
31660059--31660091	16	2.1	16	100	0	66	18	0	12	69	1.18
31660160--31660219	20	3.0	20	90	2	95	21	6	5	66	1.34
31660456--31660498	16	2.7	16	92	0	68	55	11	0	32	1.36
31660505--31660546	16	2.6	16	96	0	75	45	7	0	47	1.30
31669547--31669714	47	3.6	45	71	19	141	46	2	3	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31669511--31669655	44	3.2	43	69	19	116	46	2	3	48	1.31
31669595--31669655	28	2.2	28	85	5	81	45	0	3	50	1.17
31669495--31669680	91	2.0	91	91	0	300	46	2	3	46	1.34
31669796--31669825	16	1.9	15	93	6	51	40	0	10	50	1.36
31669817--31669851	18	2.0	17	88	5	52	45	0	0	54	0.99
31669936--31669970	18	2.0	17	88	5	52	45	0	0	54	0.99
31669696--31670111	119	3.5	119	95	1	726	42	2	5	50	1.38
31670235--31670345	45	2.6	44	81	8	133	31	30	5	32	1.80
31670323--31670392	16	4.4	16	96	0	104	32	35	0	31	1.58
31671721--31671772	23	2.3	23	93	0	86	34	0	15	50	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135