genome.fa.s8.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  73  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28667270--28667367	44	2.2	44	94	0	169	44	27	16	11	1.81
28667293--28667377	20	4.1	20	75	11	80	42	24	20	12	1.87
28672551--28672729	51	3.5	50	80	11	186	25	15	27	31	1.96
28672496--28672732	50	4.7	50	76	7	190	25	16	27	30	1.97
28672496--28672772	101	2.7	103	79	5	294	27	15	26	30	1.96
28676481--28676553	25	3.0	23	79	13	76	36	16	12	34	1.86
28676534--28676616	24	3.6	23	71	12	64	46	21	6	25	1.74
28677174--28677345	41	4.2	41	81	1	211	35	25	19	19	1.95
28678194--28678242	3	16.3	3	100	0	98	32	0	0	67	0.91
28680858--28680893	19	1.9	18	88	5	54	33	8	13	44	1.74
28681261--28681290	11	2.7	11	94	0	51	46	0	0	53	1.00
28682572--28682671	50	2.0	51	90	2	157	38	4	21	37	1.72
28687569--28687825	88	3.1	88	63	19	238	42	7	7	42	1.61
28687514--28687844	164	2.0	165	99	0	655	41	7	7	43	1.60
28689987--28690167	89	2.0	89	95	0	326	39	6	5	48	1.51
28692243--28692307	4	15.0	4	73	20	51	26	4	0	69	1.08
28692243--28692300	22	2.7	22	89	7	84	24	5	0	70	1.07
28692243--28692311	22	2.8	24	78	17	79	26	5	0	68	1.12
28714931--28714956	10	2.6	10	100	0	52	42	19	0	38	1.51
28732755--28732840	44	2.0	43	86	6	120	36	9	4	50	1.56
28735053--28735107	27	2.0	28	86	10	78	74	0	20	5	1.01
28735642--28735675	7	4.9	7	88	0	50	58	14	0	26	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28756267--28756358	41	2.2	41	86	0	121	39	3	7	50	1.47
28757345--28757407	26	2.3	26	81	10	74	34	1	1	61	1.15
28757352--28757405	26	2.0	29	85	10	78	35	1	1	61	1.18
28760866--28760890	7	3.6	7	100	0	50	40	0	0	60	0.97
28767643--28767713	27	2.7	26	86	6	106	43	7	1	47	1.39
28767777--28767896	27	4.4	27	95	0	204	25	30	28	16	1.97
28768183--28768232	3	16.7	3	100	0	100	34	0	0	66	0.92
28771674--28771753	27	3.0	27	92	0	124	13	28	30	27	1.94
28771810--28771883	27	2.7	27	78	2	94	37	1	8	52	1.40
28782642--28782672	2	15.5	2	100	0	62	48	0	0	51	1.00
28783888--28783924	19	2.0	19	94	5	67	37	0	10	51	1.37
28787233--28787260	3	9.3	3	100	0	56	32	0	0	67	0.91
28787862--28787902	20	2.0	20	100	0	82	46	19	0	34	1.50
28790210--28790285	33	2.3	33	93	0	125	39	22	19	18	1.92
28790244--28790336	45	2.1	45	91	0	150	41	19	19	19	1.90
28791376--28791426	9	5.8	9	77	13	52	3	17	3	74	1.12
28791367--28791416	26	1.9	26	84	8	66	2	22	6	70	1.20
28798856--28798894	19	2.1	19	95	0	69	43	10	46	0	1.37
28799333--28799374	21	2.0	21	86	9	59	30	4	9	54	1.53
28800107--28800869	381	2.0	382	99	0	1519	35	16	14	33	1.89
28806550--28806869	165	1.9	165	95	0	577	30	17	4	47	1.66
28809493--28809535	19	2.3	19	80	8	52	69	6	2	20	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28809795--28809830	19	1.9	18	88	5	54	75	0	2	22	0.94
28811319--28811360	21	2.0	21	85	0	57	35	0	21	42	1.53
28811512--28811577	25	2.7	26	77	11	68	25	25	15	33	1.95
28818413--28818439	7	3.9	7	100	0	54	11	0	0	88	0.50
28821704--28821739	17	2.1	18	89	5	56	58	25	5	11	1.54
28825280--28825312	7	4.7	7	100	0	66	42	12	30	15	1.83
28825280--28825325	14	3.3	14	90	0	56	41	10	30	17	1.84
28825280--28825325	21	2.2	21	88	0	65	41	10	30	17	1.84
28825236--28825368	71	1.9	72	88	1	205	32	13	27	27	1.94
28825308--28825408	43	2.3	43	93	0	166	33	13	23	28	1.93
28825455--28825491	8	4.8	8	96	3	67	21	0	27	51	1.48
28826024--28826067	22	2.0	23	82	13	56	40	9	9	40	1.68
28830619--28830655	11	3.3	11	92	3	56	16	0	2	81	0.81
28830619--28830655	12	3.2	12	88	7	58	16	0	2	81	0.81
28831351--28831385	3	11.7	3	100	0	70	31	0	0	68	0.90
28838034--28838093	15	3.9	15	80	4	57	76	0	21	1	0.87
28838173--28838275	43	2.4	43	81	3	118	31	13	28	27	1.94
28839378--28840286	50	19.1	48	71	10	659	31	21	21	26	1.98
28839376--28840286	95	9.6	95	91	0	1385	31	21	21	26	1.98
28840587--28840655	27	2.6	27	90	4	104	40	10	1	47	1.46
28840712--28840806	27	3.5	27	94	0	163	30	30	25	13	1.94
28840849--28840931	4	21.0	4	74	18	68	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28840850--28840963	28	4.0	29	71	19	73	69	0	29	0	0.95
28840875--28840991	41	3.0	40	77	16	111	70	0	28	0	0.93
28840898--28840972	18	4.0	19	75	15	75	68	0	30	1	0.98
28840850--28840993	59	2.4	59	78	12	145	69	0	29	0	0.94
28840926--28840990	27	2.2	28	81	10	78	72	0	26	1	0.94
28840994--28841029	17	2.1	18	94	5	65	27	0	5	66	1.13
28848634--28848665	3	10.7	3	100	0	64	68	31	0	0	0.90
28848888--28848962	27	2.8	27	78	8	73	17	28	28	26	1.98
28849019--28849079	28	2.2	27	85	8	86	50	0	8	40	1.32
28849027--28849091	30	2.3	28	84	7	78	50	1	10	36	1.47
28849315--28849343	3	9.7	3	100	0	58	31	0	0	68	0.89
28850738--28850910	57	3.1	57	64	14	160	57	9	4	28	1.48
28850729--28850930	111	1.8	112	98	1	397	56	8	4	29	1.51
28851101--28851129	3	9.7	3	100	0	58	31	0	0	68	0.89
28860580--28860620	17	2.4	17	100	0	82	43	14	7	34	1.73
28864387--28864426	20	2.0	20	90	0	62	27	10	12	50	1.72
28864372--28864438	34	1.9	35	90	3	109	31	8	13	46	1.74
28864366--28864442	14	5.0	15	71	20	52	33	9	14	42	1.77
28869920--28869962	18	2.4	18	92	7	70	55	0	0	44	0.99
28886068--28886101	2	17.0	2	100	0	68	50	0	50	0	1.00
28897910--28898003	47	2.0	47	100	0	188	25	17	17	40	1.90
28909111--28909201	30	3.0	30	95	0	164	41	19	10	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28909490--28909518	13	2.3	13	94	5	51	0	10	0	89	0.48
28909901--28910198	128	2.3	128	84	2	395	36	2	7	53	1.42
28909901--28910216	129	2.5	128	83	3	325	37	2	7	52	1.44
28914126--28914179	11	4.9	11	77	8	56	59	0	1	38	1.08
28914126--28914222	41	2.3	42	89	5	142	60	0	3	36	1.12
28932893--28932919	5	5.4	5	100	0	54	22	0	0	77	0.76
28941836--28941865	7	4.3	7	100	0	60	43	30	13	13	1.82
28946775--28946812	15	2.4	16	86	4	51	21	7	21	50	1.74
28953452--28953518	32	2.1	31	83	5	80	65	7	1	25	1.27
28954124--28954168	23	2.0	23	95	0	81	31	11	20	37	1.87
28956247--28956318	31	2.3	29	81	11	81	38	9	8	43	1.68
28965211--28965326	21	5.5	21	91	0	178	42	18	23	16	1.89
28965211--28965343	42	3.2	42	86	2	169	44	16	24	15	1.86
28965211--28965343	63	2.1	63	84	2	169	44	16	24	15	1.86
28967316--28967355	17	2.3	17	95	4	71	45	32	10	12	1.75
28974537--28974600	30	2.1	31	83	13	80	46	10	9	32	1.71
28975117--28975182	33	1.9	34	84	6	89	39	13	16	30	1.87
28978839--28978869	7	4.4	7	100	0	62	12	0	12	74	1.08
28981672--28981697	5	5.2	5	100	0	52	42	19	19	19	1.90
28984744--28984816	29	2.5	29	75	6	76	27	10	9	52	1.68
28984744--28984828	30	2.8	30	74	10	84	30	10	8	50	1.66
28985107--28985152	24	1.9	24	86	8	67	63	4	0	32	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28997513--28997701	99	1.9	98	86	5	265	43	19	10	27	1.82
29003723--29003756	15	2.3	15	89	0	50	35	20	0	44	1.52
29005510--29005546	18	2.1	18	89	0	56	37	2	8	51	1.46
29006501--29006526	8	3.2	8	100	0	52	53	0	0	46	1.00
29009826--29009870	20	2.3	20	84	3	56	40	13	2	44	1.56
29012307--29012336	15	1.9	16	93	6	53	40	16	0	43	1.48
29014820--29014856	18	2.1	18	94	0	65	27	5	13	54	1.61
29014993--29015103	58	1.9	58	81	7	136	31	4	10	53	1.56
29017212--29017253	21	2.0	21	85	4	57	45	2	7	45	1.44
29017897--29017949	23	2.2	24	78	21	58	56	5	1	35	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135