genome.fa.s8.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  101  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37466026--37466282	45	5.7	45	76	6	173	22	18	18	40	1.92
37466048--37466240	90	2.1	90	82	3	228	22	19	18	39	1.92
37466092--37466282	90	2.1	89	79	10	210	23	18	18	39	1.92
37479849--37479914	29	2.5	26	75	18	64	56	1	0	42	1.08
37493539--37493709	66	2.6	65	81	1	155	18	17	14	49	1.80
37493567--37493730	33	5.0	33	83	1	152	18	20	15	46	1.84
37493587--37493730	66	2.2	65	85	2	182	18	20	15	45	1.86
37497435--37497476	17	2.4	17	80	11	50	52	11	4	30	1.59
37497592--37497664	31	2.3	32	92	4	121	32	4	2	60	1.30
37497611--37497661	16	3.3	15	71	17	50	31	5	1	60	1.31
37505539--37505578	20	2.0	20	85	5	53	42	12	0	45	1.42
37505997--37506056	24	2.5	24	86	2	86	43	16	11	28	1.83
37526277--37526432	82	1.9	82	97	0	294	31	20	13	34	1.91
37527836--37527991	40	3.9	40	86	0	206	19	26	18	34	1.95
37527815--37528017	80	2.5	80	79	5	232	23	26	16	33	1.96
37553737--37553925	60	3.2	59	84	2	254	38	12	24	24	1.90
37553739--37553838	30	3.4	30	69	12	89	36	11	27	26	1.90
37553737--37553923	59	3.2	58	85	3	257	37	12	24	24	1.91
37553735--37553940	29	7.0	29	69	10	114	36	14	25	23	1.92
37567554--37567597	22	2.0	21	83	12	54	40	0	0	59	0.98
37569886--37569913	14	2.0	14	100	0	56	21	21	7	50	1.72
37576193--37576227	18	1.9	18	100	0	70	40	14	17	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37586829--37586869	13	2.9	14	85	14	57	21	0	9	68	1.18
37597374--37597473	28	3.6	28	90	0	155	31	27	11	31	1.91
37599971--37600008	20	2.0	20	89	5	60	65	10	0	23	1.23
37599954--37600042	20	4.3	20	71	15	56	65	8	1	24	1.29
37600083--37600131	9	5.4	9	83	9	64	28	10	20	40	1.85
37600083--37600131	18	2.7	18	90	0	80	28	10	20	40	1.85
37602643--37602800	82	1.9	82	89	2	246	41	3	3	51	1.38
37602950--37603146	105	1.9	107	97	2	380	36	11	13	38	1.81
37605371--37605489	58	2.0	60	80	9	136	57	1	0	40	1.15
37607068--37607148	29	2.7	29	81	7	83	35	11	7	45	1.68
37607423--37607448	5	5.2	5	100	0	52	42	19	19	19	1.90
37608390--37608508	58	2.0	60	80	9	136	57	1	0	40	1.15
37609254--37609310	29	2.1	26	87	9	78	56	0	1	42	1.10
37610665--37610724	30	2.0	30	83	3	75	41	0	38	20	1.52
37610937--37610976	14	2.9	15	82	14	50	30	12	17	40	1.86
37611027--37611057	9	3.4	9	90	0	53	38	22	12	25	1.90
37611913--37611947	19	1.9	18	88	11	54	22	0	8	68	1.16
37617907--37617940	4	8.5	4	100	0	68	73	0	0	26	0.83
37623039--37623083	18	2.5	18	85	7	65	44	17	0	37	1.49
37626275--37626299	9	2.8	9	100	0	50	32	0	36	32	1.58
37626465--37626899	217	2.0	218	99	0	863	31	18	18	30	1.96
37632376--37632443	35	1.9	35	100	0	136	41	8	22	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37645895--37646021	20	6.3	20	70	8	69	12	28	17	41	1.86
37652847--37652887	19	2.1	20	86	4	57	41	9	17	31	1.82
37653510--37653538	7	4.3	7	95	4	51	31	0	10	58	1.31
37660005--37660107	25	4.2	25	83	1	109	23	25	19	32	1.98
37668584--37668636	20	2.7	20	82	5	63	13	16	28	41	1.86
37671185--37671263	38	2.0	40	85	4	108	58	2	1	37	1.20
37671234--37671273	19	2.1	19	90	0	62	57	2	0	40	1.12
37671187--37671306	49	2.5	49	76	10	131	57	1	1	39	1.19
37671696--37671744	23	2.1	23	84	0	62	20	34	22	22	1.97
37679575--37679737	43	3.8	42	72	12	127	31	27	17	23	1.96
37681461--37681533	38	2.0	36	84	10	94	43	2	0	53	1.15
37687510--37687544	14	2.5	14	90	0	52	65	0	0	34	0.93
37692079--37692148	35	2.0	35	100	0	140	40	34	0	25	1.56
37692468--37693201	364	2.0	365	89	2	1129	28	19	15	36	1.92
37693858--37693902	2	23.0	2	86	4	65	0	51	0	48	1.00
37704359--37704414	24	2.3	24	96	0	103	17	8	7	66	1.42
37705814--37705856	16	2.7	16	77	0	50	44	2	20	32	1.65
37705844--37705929	44	1.9	45	88	2	129	31	8	24	36	1.85
37706032--37706145	58	1.9	61	83	7	153	52	5	0	42	1.24
37710829--37710866	16	2.4	16	86	4	51	21	10	2	65	1.35
37712259--37712304	18	2.6	18	82	0	56	32	4	4	58	1.37
37720169--37720305	43	3.1	43	69	4	139	25	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37720087--37720350	88	3.0	87	93	1	429	26	24	25	23	2.00
37720123--37720350	44	5.2	45	68	5	169	28	25	25	21	1.99
37720356--37720446	44	2.1	44	95	0	164	23	16	28	31	1.96
37720698--37721335	44	14.7	44	71	12	331	29	20	22	28	1.98
37720697--37721355	217	3.0	215	91	1	1039	29	20	21	28	1.98
37722967--37723039	18	3.9	18	73	21	60	34	4	8	53	1.50
37723628--37723653	2	13.0	2	100	0	52	50	0	0	50	1.00
37724323--37724379	27	2.2	26	84	6	78	36	10	17	35	1.84
37724329--37724389	27	2.3	27	97	0	113	34	11	11	42	1.77
37728580--37728695	47	2.5	46	81	8	135	18	13	25	42	1.87
37734198--37734224	13	2.1	13	100	0	54	22	22	7	48	1.75
37742735--37742765	2	15.5	2	100	0	62	0	0	48	51	1.00
37746340--37746403	27	2.4	27	84	5	85	32	18	17	31	1.94
37747555--37747586	5	6.4	5	100	0	64	81	0	0	18	0.70
37748414--37748451	18	2.0	20	90	10	62	31	0	13	55	1.38
37750055--37750096	21	2.0	21	90	4	66	2	35	0	61	1.09
37751535--37751577	11	4.0	11	85	8	54	67	2	0	30	1.03
37752758--37753048	153	1.9	153	88	4	444	30	8	8	51	1.63
37753277--37753314	19	2.1	19	85	5	51	23	0	5	71	1.07
37755579--37755620	22	2.0	21	85	4	57	45	19	4	30	1.71
37761156--37761202	24	2.0	23	84	12	60	29	14	4	51	1.62
37761439--37761482	23	1.9	23	90	9	72	27	18	0	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37762060--37762114	5	11.2	5	74	18	53	58	1	0	40	1.09
37762058--37762110	27	2.0	25	89	7	79	54	1	0	43	1.11
37769699--37769738	15	2.6	16	88	4	55	20	45	0	35	1.51
37771374--37771415	21	2.0	21	95	4	75	21	26	14	38	1.91
37776308--37776361	25	2.2	25	82	0	63	25	9	44	20	1.81
37777808--37777910	27	3.8	27	82	1	134	40	21	17	20	1.91
37780825--37780983	86	1.8	86	85	2	221	42	17	9	30	1.81
37781139--37781209	29	2.4	29	80	2	79	59	0	4	36	1.17
37781139--37781200	29	2.1	30	84	3	81	58	0	3	38	1.15
37781521--37781636	9	12.4	9	67	16	58	31	3	2	62	1.25
37785326--37785364	16	2.4	17	83	12	55	66	2	0	30	1.05
37785497--37785571	31	2.5	30	77	12	84	61	1	0	37	1.05
37791184--37791219	18	2.0	18	94	0	63	36	22	19	22	1.95
37803829--37803858	12	2.5	12	94	0	51	10	26	36	26	1.88
37808665--37808721	27	2.1	27	90	3	89	47	21	15	15	1.82
37811975--37812043	26	2.7	26	83	0	93	17	23	24	34	1.96
37812002--37812205	29	7.2	29	75	10	154	25	16	20	38	1.92
37812028--37812183	58	2.7	59	82	4	183	23	16	19	39	1.92
37834184--37834220	19	2.0	19	89	5	58	67	0	0	32	0.91
37834146--37834216	27	2.6	28	82	8	85	64	0	2	32	1.08
37834184--37834261	10	7.9	10	76	12	56	60	2	3	33	1.28
37840469--37840511	18	2.5	17	84	3	50	81	0	11	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37864970--37865056	13	6.5	14	72	17	60	33	18	3	44	1.66
37864968--37865056	40	2.2	40	95	0	160	32	20	3	43	1.68
37865002--37865054	27	2.0	27	84	0	70	33	20	3	41	1.70
37870363--37870494	50	2.6	49	81	7	149	28	25	28	18	1.98
37870779--37870811	12	2.8	12	90	9	50	63	0	27	9	1.24
37875348--37875425	26	3.0	26	75	0	75	28	20	8	42	1.82
37882520--37882825	114	2.7	112	80	8	339	28	20	24	26	1.99
37882753--37882900	76	1.9	76	84	2	199	28	20	25	25	1.99
37882639--37883013	190	2.0	190	80	6	429	26	20	25	28	1.99
37882842--37883054	114	1.9	114	89	0	336	24	21	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135