genome.fa.s8.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  66  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26390089--26390151	25	2.5	25	84	5	74	31	17	14	36	1.90
26390580--26390624	23	1.9	24	86	4	65	26	51	2	20	1.59
26392640--26393052	208	2.0	208	94	0	720	26	19	4	49	1.67
26394724--26394788	18	3.4	18	74	12	67	35	23	20	21	1.96
26394733--26394808	21	3.8	21	72	10	77	31	18	23	26	1.97
26394716--26394808	39	2.4	39	96	0	168	31	19	21	27	1.97
26408816--26408869	3	17.3	3	86	3	72	29	1	3	64	1.21
26410341--26410381	18	2.3	18	87	4	57	36	2	0	60	1.10
26414711--26414762	27	1.9	27	88	0	77	34	19	25	21	1.96
26414944--26415090	26	5.7	26	82	7	174	27	16	18	38	1.92
26414944--26415090	52	2.8	51	85	4	197	27	16	18	38	1.92
26415881--26415953	25	2.7	29	77	16	100	42	6	28	21	1.79
26419627--26419667	10	4.1	10	80	0	55	31	0	0	68	0.90
26420522--26420547	7	3.7	7	100	0	52	26	0	15	57	1.38
26427807--26428451	321	2.0	322	95	0	1148	29	15	20	34	1.93
26429684--26429714	6	5.2	6	100	0	62	32	0	0	67	0.91
26429934--26429963	11	2.6	12	94	5	53	30	0	0	70	0.88
26429934--26429963	6	5.2	6	92	8	53	30	0	0	70	0.88
26429682--26430181	249	2.0	250	99	0	993	38	4	22	35	1.75
26438480--26438505	13	2.0	13	100	0	52	46	7	23	23	1.78
26439748--26439782	17	2.1	16	89	5	52	60	0	0	40	0.97
26439752--26439795	14	3.1	14	90	6	63	56	2	0	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26440347--26440399	23	2.2	26	83	10	67	30	1	20	47	1.61
26440864--26440893	14	2.1	15	93	6	53	43	0	6	50	1.28
26442356--26442853	248	2.0	249	99	0	989	35	10	14	39	1.81
26451479--26451508	9	3.3	9	95	0	51	90	0	3	6	0.56
26452651--26452689	15	2.7	15	92	7	64	46	0	0	53	1.00
26454842--26454885	3	14.7	3	100	0	88	68	0	0	31	0.90
26459042--26459127	26	3.2	26	70	18	68	44	3	1	51	1.26
26465257--26465314	22	2.7	21	76	10	53	41	18	5	34	1.73
26465691--26466317	88	7.1	88	86	2	679	24	25	23	27	2.00
26465925--26466217	45	6.7	43	68	7	135	24	26	21	26	1.99
26465688--26466317	264	2.4	264	84	1	764	24	25	23	27	2.00
26465729--26466217	44	11.1	45	64	10	220	24	25	22	27	2.00
26466101--26466521	219	1.9	219	85	4	580	24	26	22	26	2.00
26466320--26466545	88	2.6	87	86	2	301	24	26	23	25	2.00
26465740--26466542	44	18.3	44	63	12	144	25	25	23	26	2.00
26475074--26475117	17	2.6	17	81	0	61	15	45	25	13	1.83
26478324--26478351	6	4.7	6	100	0	56	14	0	0	85	0.59
26478560--26478693	73	1.9	72	86	6	193	14	17	10	58	1.63
26479139--26479195	29	2.0	28	86	3	78	21	14	42	22	1.88
26482413--26482531	20	6.4	19	70	20	65	38	0	5	54	1.30
26490013--26490067	17	3.2	17	72	25	53	52	1	43	1	1.22
26496292--26496440	54	2.8	54	77	4	158	27	28	24	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26496619--26496643	8	3.1	8	100	0	50	60	16	0	24	1.36
26510261--26510300	21	2.0	21	85	5	55	47	20	0	32	1.50
26523916--26523999	31	2.7	31	87	1	107	32	8	13	46	1.72
26527821--26528043	45	5.0	45	89	0	302	43	10	21	24	1.84
26530501--26530545	18	2.5	18	88	0	72	51	2	0	46	1.13
26534700--26534746	20	2.3	20	88	0	67	10	25	36	27	1.89
26537879--26537926	19	2.5	20	80	19	66	68	0	0	31	0.90
26537885--26537927	17	2.7	15	82	7	50	67	0	0	32	0.91
26540292--26540473	51	3.6	51	82	5	194	25	15	28	30	1.96
26541812--26541867	20	2.8	20	81	13	69	23	21	16	39	1.92
26543343--26543369	12	2.2	12	100	0	54	70	7	7	14	1.32
26544494--26544534	21	2.0	21	85	4	57	65	0	19	14	1.26
26544545--26544584	18	2.3	18	82	4	55	67	5	15	12	1.38
26544591--26544624	15	2.3	15	89	0	50	67	0	29	2	1.05
26546420--26546474	20	2.8	20	83	10	76	23	21	16	38	1.93
26549178--26549204	13	2.1	13	100	0	54	48	14	7	29	1.71
26549685--26549771	43	2.0	43	95	0	156	35	25	11	27	1.90
26551371--26551404	15	2.3	15	94	0	59	64	17	0	17	1.29
26553340--26553667	44	7.6	45	72	15	156	28	21	20	28	1.98
26553509--26553668	84	1.9	86	86	5	234	29	21	20	28	1.98
26553509--26553668	44	3.7	43	85	7	202	29	21	20	28	1.98
26553336--26553667	128	2.6	129	81	7	334	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26553691--26554212	260	2.0	260	90	0	830	26	25	20	27	1.99
26555659--26555717	6	9.3	6	87	9	66	0	22	0	77	0.76
26555657--26555708	17	3.2	17	77	17	58	0	23	0	76	0.78
26555657--26555715	24	2.5	24	86	5	75	0	23	0	76	0.79
26555664--26555719	24	2.3	24	87	6	78	0	23	0	76	0.78
26562033--26562066	15	2.3	15	94	0	59	64	17	0	17	1.29
26562197--26562251	22	2.5	21	82	11	58	78	3	5	12	1.06
26562212--26562242	15	2.1	15	93	0	53	80	3	3	12	0.95
26562464--26562520	27	2.0	30	83	10	75	57	3	5	33	1.38
26565989--26566052	21	3.0	22	75	13	78	21	23	18	35	1.95
26574581--26574782	53	3.8	53	94	0	341	31	9	16	42	1.81
26601042--26601096	27	2.0	29	89	7	87	50	18	9	21	1.74
26606608--26606632	7	3.6	7	100	0	50	48	28	0	24	1.52
26609481--26609726	124	2.0	125	91	2	406	34	11	13	39	1.82
26610494--26610532	19	2.1	19	100	0	78	30	5	5	58	1.41
26610732--26610790	29	2.0	29	96	0	109	59	1	3	35	1.24
26615897--26616144	51	4.9	51	79	3	284	29	14	26	29	1.95
26615897--26616177	51	5.5	51	74	5	255	30	13	26	29	1.94
26615896--26616144	102	2.4	102	99	0	489	29	14	26	29	1.95
26617049--26617091	15	2.9	14	82	6	50	44	0	30	25	1.55
26619087--26619347	27	9.7	27	85	5	289	17	18	21	42	1.90
26619101--26619347	54	4.6	54	85	5	329	17	19	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26619101--26619347	81	3.0	81	85	8	340	17	19	20	42	1.89
26621087--26621111	12	2.1	12	100	0	50	8	24	36	32	1.84
26621119--26621228	40	2.8	39	77	4	130	41	18	19	20	1.90
26621291--26621415	41	3.0	41	92	1	205	20	21	30	27	1.98
26622106--26622150	14	3.1	15	81	9	58	20	0	46	33	1.51
26623232--26623271	17	2.4	17	95	0	71	47	15	22	15	1.82
26626124--26626618	23	21.7	23	74	11	340	30	6	22	40	1.79
26626115--26626548	160	2.7	159	93	2	717	29	6	23	41	1.78
26626155--26626618	137	3.4	136	84	4	481	29	6	23	40	1.79
26626318--26626620	137	2.2	137	91	0	500	31	5	22	39	1.78
26627248--26627515	43	6.3	43	91	1	423	19	20	32	27	1.97
26638624--26638650	10	2.7	10	100	0	54	18	18	11	51	1.74
26639567--26639669	41	2.5	41	96	0	188	33	26	16	24	1.96
26654374--26654439	33	2.0	33	96	0	123	27	16	27	28	1.97
26655722--26655770	24	2.0	24	84	0	62	36	4	14	44	1.64
26658589--26658627	19	2.0	19	85	5	51	48	12	17	20	1.80
26663246--26663369	43	2.9	43	81	11	146	22	20	26	29	1.99
26666943--26666994	17	2.9	18	72	11	54	40	0	1	57	1.10
26679918--26680158	131	1.8	131	84	3	333	39	12	16	31	1.87
26682344--26682382	14	2.8	14	84	0	60	38	28	25	7	1.83
26683844--26683877	17	2.0	17	88	0	50	20	5	8	64	1.43
26683949--26683981	15	2.2	15	94	0	57	24	0	12	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26696310--26696347	14	2.7	14	91	0	58	39	26	28	5	1.78
26697380--26697437	25	2.3	25	85	5	73	22	1	0	75	0.89
26697550--26697592	15	2.6	16	85	10	52	20	4	6	67	1.33
26697641--26697673	15	2.2	15	94	0	57	24	0	12	63	1.28
26701611--26701670	13	4.5	13	74	15	59	51	5	1	41	1.33
26701611--26701670	26	2.2	28	88	11	90	51	5	1	41	1.33
26703466--26703533	21	3.2	21	73	8	66	23	35	23	17	1.95
26703465--26703552	42	2.1	42	93	0	149	22	37	21	18	1.94
26703474--26703546	21	3.5	21	70	7	67	21	35	20	21	1.96
26705648--26705730	25	3.3	25	81	0	94	28	25	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135