genome.fa.s8.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  123  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44596271--44596322	22	2.4	22	93	3	88	46	1	25	26	1.63
44596699--44596736	10	3.5	11	86	13	53	34	0	2	63	1.09
44599857--44599931	33	2.3	33	95	0	132	46	2	13	37	1.57
44600550--44600627	24	3.3	22	71	18	59	56	1	1	41	1.15
44607533--44607563	16	1.9	16	100	0	62	19	12	29	38	1.89
44608677--44608744	34	2.1	32	86	5	91	54	2	2	39	1.31
44608621--44608826	103	2.0	103	97	1	387	49	4	5	40	1.48
44613685--44613717	15	2.3	15	89	5	50	75	0	6	18	1.00
44613696--44613877	87	2.1	88	97	1	348	55	5	14	24	1.61
44615602--44615990	44	8.6	45	79	8	373	28	19	18	33	1.96
44615602--44615990	89	4.3	88	78	11	342	28	19	18	33	1.96
44620348--44620423	25	3.2	25	73	17	90	46	39	2	11	1.55
44622824--44622857	16	2.2	15	94	5	59	64	0	8	26	1.22
44623682--44623803	61	2.0	61	100	0	244	26	24	21	27	1.99
44628760--44628825	14	4.8	14	74	20	59	33	24	19	22	1.97
44628745--44628825	41	2.0	41	85	4	110	32	23	20	23	1.98
44640622--44640661	20	2.0	20	85	9	55	22	30	0	47	1.52
44643964--44643997	18	1.9	18	94	5	61	61	2	5	29	1.34
44644018--44644063	24	1.9	24	86	8	67	67	6	2	23	1.25
44645687--44645964	125	2.2	124	89	3	425	30	15	22	31	1.95
44646831--44646948	29	4.0	30	84	4	152	34	24	3	37	1.72
44646883--44646963	29	2.8	28	77	9	81	35	23	7	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44647285--44647351	10	6.4	10	72	14	55	74	4	19	1	1.07
44647461--44647539	4	20.5	4	80	19	89	77	0	22	0	0.77
44647435--44647538	7	15.0	7	74	12	72	72	0	26	0	0.91
44647461--44647539	7	10.2	8	85	14	89	77	0	22	0	0.77
44647458--44647539	27	3.1	27	80	18	100	76	0	23	0	0.78
44647443--44647541	11	9.2	11	74	23	61	74	0	24	1	0.88
44647817--44647904	7	11.9	7	77	15	88	79	1	19	0	0.79
44647820--44647904	8	10.5	8	80	7	84	80	1	18	0	0.79
44647822--44647904	23	3.5	22	88	8	103	79	1	19	0	0.80
44648048--44648094	22	2.1	23	84	11	62	34	4	0	61	1.15
44648430--44648568	39	3.6	39	81	12	180	33	12	9	43	1.75
44648364--44648579	37	5.8	37	76	14	171	31	14	10	43	1.79
44648411--44648568	78	2.1	76	85	7	214	34	12	9	43	1.75
44648634--44648675	21	2.0	21	90	9	68	47	9	11	30	1.72
44655704--44655730	14	1.9	14	100	0	54	29	7	0	62	1.22
44655710--44656402	77	9.1	76	87	2	801	28	17	20	32	1.96
44655721--44656402	230	3.0	225	84	5	834	28	18	20	32	1.96
44656763--44657649	78	11.6	79	86	6	1000	26	16	21	34	1.95
44656734--44657649	154	6.0	153	84	7	1031	26	16	21	35	1.95
44657853--44657970	29	4.0	30	82	5	134	34	23	4	37	1.75
44658315--44658381	10	6.4	10	72	14	55	74	4	19	1	1.07
44658490--44658581	4	22.8	4	78	14	100	76	0	22	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44658497--44658581	23	3.5	26	78	18	110	77	0	22	0	0.77
44658498--44658588	30	3.1	29	76	19	73	78	0	21	0	0.76
44658614--44658642	10	2.7	11	94	5	51	17	58	20	3	1.53
44658882--44658958	7	11.0	7	78	13	79	79	1	19	0	0.81
44658892--44658958	8	8.4	8	77	9	66	80	0	19	0	0.71
44658885--44658958	13	5.2	15	73	16	68	79	1	18	0	0.80
44658899--44658953	18	3.2	18	76	21	55	80	0	20	0	0.72
44658894--44658963	20	3.5	20	75	18	65	80	0	20	0	0.72
44658882--44658965	26	3.4	25	85	12	111	77	1	21	0	0.84
44659102--44659148	22	2.1	23	84	11	62	34	4	0	61	1.15
44659263--44659298	17	2.2	16	90	9	56	27	11	11	50	1.72
44659497--44659597	21	5.1	21	68	24	76	34	12	7	44	1.72
44659414--44659558	56	2.6	56	78	8	150	32	13	10	43	1.78
44659498--44659719	39	5.6	39	73	17	181	33	12	9	45	1.74
44659413--44659632	18	11.8	17	71	17	127	31	14	10	43	1.79
44659479--44659636	78	2.1	76	87	7	223	34	13	9	43	1.76
44659479--44659647	39	4.4	38	78	14	188	31	14	10	43	1.79
44659681--44659716	17	2.2	17	90	5	56	36	5	11	47	1.63
44662607--44662719	30	3.9	29	89	3	156	28	0	23	47	1.57
44662999--44663054	24	2.3	24	93	0	94	19	16	37	26	1.92
44667252--44667287	15	2.5	15	90	4	56	77	0	22	0	0.76
44670897--44670936	21	1.9	21	89	0	62	25	15	10	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44674609--44674658	3	16.7	3	95	0	91	66	2	0	32	1.03
44675103--44675154	24	2.2	24	85	0	68	48	9	5	36	1.60
44679485--44679531	24	2.0	24	87	8	69	48	6	6	38	1.54
44679497--44679548	24	2.2	24	82	0	59	50	5	3	40	1.45
44692007--44692056	25	2.0	25	96	0	91	24	18	16	42	1.89
44693523--44693550	4	7.0	4	100	0	56	50	0	0	50	1.00
44697222--44697259	19	2.0	19	94	0	67	39	10	13	36	1.79
44716388--44716427	9	4.4	9	93	0	71	25	12	22	40	1.89
44716481--44716517	9	4.1	9	92	0	65	45	13	10	29	1.77
44717522--44717547	5	5.2	5	100	0	52	19	19	19	42	1.90
44722980--44723013	3	11.3	3	100	0	68	67	0	32	0	0.91
44723092--44723152	3	20.3	3	100	0	122	0	32	0	67	0.91
44723671--44723743	3	24.7	3	76	8	69	1	31	0	67	1.00
44723671--44723743	20	3.7	20	78	5	67	1	31	0	67	1.00
44725068--44725110	18	2.4	16	82	17	50	41	13	0	44	1.44
44728783--44728830	21	2.2	22	88	3	71	25	18	41	14	1.88
44730575--44730633	31	1.9	31	92	0	100	49	3	1	45	1.28
44731616--44731653	17	2.3	17	86	4	51	31	5	5	57	1.43
44736152--44736312	80	2.0	81	98	1	315	50	11	13	24	1.74
44750399--44750424	3	8.7	3	100	0	52	69	0	30	0	0.89
44752473--44752503	2	15.5	2	100	0	62	51	0	48	0	1.00
44759043--44759256	30	7.9	30	73	23	224	28	33	0	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44759072--44759119	22	2.2	22	96	0	87	25	35	0	39	1.56
44759043--44759275	52	4.5	52	98	0	448	28	33	0	38	1.58
44759124--44759171	22	2.2	22	96	0	87	25	35	0	39	1.56
44759176--44759223	22	2.2	22	96	0	87	25	35	0	39	1.56
44759228--44759278	22	2.3	22	93	6	86	29	35	0	35	1.58
44759313--44759376	29	2.2	29	88	2	92	32	0	1	65	1.02
44759326--44759368	20	2.2	19	83	4	50	30	0	2	67	1.03
44762099--44762643	273	2.0	273	95	0	991	31	26	21	20	1.98
44762765--44763012	23	10.4	23	73	17	186	50	23	0	25	1.49
44762744--44762821	29	2.6	30	93	2	131	47	25	0	26	1.52
44762822--44763062	45	5.5	44	77	16	205	51	22	0	25	1.52
44762856--44763050	68	3.0	68	89	5	296	50	23	0	26	1.50
44763060--44763246	29	6.9	23	72	25	88	46	21	0	32	1.52
44763024--44763348	30	11.4	29	85	8	445	45	24	0	30	1.56
44762982--44763348	145	2.5	137	86	10	475	46	23	0	29	1.55
44775069--44775106	20	2.0	20	85	10	53	44	0	2	52	1.14
44776542--44776661	51	2.4	51	85	0	168	54	5	3	37	1.39
44777605--44777638	13	2.7	12	90	9	50	76	0	5	17	0.98
44777605--44777638	6	5.3	6	89	10	50	76	0	5	17	0.98
44781892--44781917	3	8.7	3	100	0	52	0	34	30	34	1.58
44784784--44784833	17	2.9	17	87	0	73	26	22	6	46	1.74
44793896--44793942	26	2.0	24	84	16	62	44	14	25	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44802668--44802701	18	1.9	18	88	5	52	35	2	5	55	1.39
44811765--44811812	21	2.5	18	86	10	60	62	0	6	31	1.20
44812656--44812736	25	3.3	25	72	13	62	71	3	22	2	1.14
44812700--44812736	14	2.9	13	85	14	51	72	0	27	0	0.84
44812700--44812736	13	2.9	14	88	11	53	72	0	27	0	0.84
44815523--44815558	9	3.9	9	92	3	54	27	0	19	52	1.46
44816020--44816054	13	2.7	13	95	0	61	51	0	2	45	1.16
44817173--44817206	16	2.1	16	88	0	50	41	2	20	35	1.68
44819470--44819500	12	2.5	13	94	5	55	38	0	3	58	1.15
44828085--44828212	49	2.8	44	71	15	114	33	17	17	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135