genome.fa.s8.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  16  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6692274--6692299	8	3.2	8	100	0	52	34	0	23	42	1.54
6695429--6695459	16	1.9	16	100	0	62	45	9	6	38	1.63
6704744--6705622	335	2.7	335	81	5	936	31	13	15	38	1.87
6709486--6709610	27	4.6	27	81	0	133	44	16	20	20	1.87
6709486--6709610	54	2.3	54	81	0	151	44	16	20	20	1.87
6713993--6714025	16	2.1	16	100	0	66	24	12	0	63	1.28
6717141--6717210	32	2.2	32	94	5	124	45	12	8	32	1.73
6723906--6723970	32	2.1	32	94	2	114	32	9	10	47	1.70
6724540--6724567	12	2.3	12	100	0	56	71	14	14	0	1.15
6725821--6726055	99	2.4	99	80	5	244	36	17	18	27	1.94
6734458--6734720	76	3.5	76	76	2	242	33	20	19	26	1.97
6735739--6735764	12	2.2	12	100	0	52	30	19	0	50	1.48
6738659--6739897	335	3.7	334	82	2	1457	30	14	16	38	1.88
6744313--6744365	28	1.9	28	84	3	72	49	3	1	45	1.31
6744504--6744554	22	2.3	23	83	16	72	56	0	0	43	0.99
6746007--6746039	16	2.1	16	100	0	66	24	12	0	63	1.28
6749955--6750027	27	2.7	27	87	4	94	36	13	26	23	1.92
6749975--6750030	27	2.1	27	96	0	103	37	12	26	23	1.90
6758655--6758805	50	3.0	50	100	0	302	31	9	23	34	1.88
6771217--6771663	146	3.0	144	82	7	522	42	9	4	43	1.56
6771414--6771457	20	2.1	21	87	4	63	50	9	0	40	1.34
6772066--6772100	10	3.4	10	96	4	61	74	0	17	8	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6772489--6772793	42	7.3	42	83	0	349	38	22	17	22	1.93
6775227--6775404	50	3.6	50	80	3	191	21	26	23	29	1.99
6777121--6777454	148	2.2	148	87	4	469	41	9	6	42	1.62
6777527--6777720	97	2.0	97	100	0	388	29	13	14	42	1.84
6779903--6779946	22	2.0	22	90	4	70	4	9	15	70	1.30
6780591--6780813	43	5.2	43	67	18	124	21	19	23	35	1.96
6780522--6780786	128	2.1	128	87	4	383	23	18	23	34	1.96
6780735--6780821	43	2.0	43	90	0	138	18	19	24	37	1.94
6780924--6781196	40	6.6	41	77	9	270	25	23	23	28	1.99
6780820--6781197	167	2.3	166	96	0	695	24	22	22	30	1.99
6781193--6781324	43	3.1	43	64	16	110	24	25	23	27	2.00
6781203--6781337	42	3.2	42	64	19	107	22	25	22	28	1.99
6782581--6782615	6	5.7	6	96	3	61	14	14	0	71	1.15
6783797--6783853	25	2.3	25	84	6	80	56	10	12	21	1.65
6786974--6787250	106	2.6	106	81	6	301	33	20	17	27	1.96
6788157--6788214	3	19.7	3	77	13	50	65	5	0	29	1.14
6788989--6789032	22	2.0	22	86	4	61	4	11	15	68	1.36
6789755--6789811	3	18.7	3	85	3	51	54	0	8	36	1.32
6796063--6796148	44	2.0	44	97	0	163	45	24	16	13	1.84
6797190--6797239	26	1.9	26	95	0	91	30	12	12	46	1.77
6805501--6805541	15	2.8	15	85	10	50	21	2	0	75	0.92
6805577--6805604	6	4.7	6	100	0	56	17	0	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6811927--6812113	102	1.8	103	80	3	225	31	14	23	29	1.95
6813491--6813540	22	2.3	22	82	6	57	22	2	4	72	1.12
6818478--6818511	17	2.0	17	88	0	50	50	14	5	29	1.67
6819218--6819276	20	2.9	18	76	18	55	42	8	1	47	1.44
6823285--6823380	47	2.0	47	93	0	165	37	18	18	25	1.94
6833493--6833535	2	21.5	2	100	0	86	51	0	48	0	1.00
6837858--6837914	26	2.2	26	96	0	105	43	24	5	26	1.75
6837858--6837931	26	2.7	26	85	6	76	44	24	4	27	1.71
6842020--6842082	28	2.2	28	83	5	74	26	14	4	53	1.60
6843568--6843714	74	2.0	74	93	0	249	36	22	23	18	1.95
6844038--6844548	27	19.0	26	80	5	464	41	21	16	20	1.90
6844031--6844548	54	9.6	53	83	3	545	41	21	16	20	1.90
6844031--6844548	81	6.4	80	83	3	545	41	21	16	20	1.90
6844782--6844831	26	1.9	26	91	0	82	18	18	24	40	1.91
6844943--6845109	28	6.0	28	90	1	237	26	21	21	30	1.98
6844944--6845111	55	3.0	56	88	1	248	25	21	22	30	1.98
6844944--6845111	83	2.0	84	90	1	266	25	21	22	30	1.98
6847173--6847339	26	6.4	26	83	2	183	26	17	25	30	1.97
6847174--6847353	78	2.3	78	84	3	220	27	16	23	32	1.96
6849335--6849387	24	2.3	23	81	12	63	56	13	18	11	1.66
6854105--6854232	26	5.1	26	79	14	128	16	22	22	38	1.93
6854105--6854232	52	2.5	51	81	10	147	16	22	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6859956--6860024	29	2.3	30	85	2	86	40	14	10	34	1.80
6860125--6860197	10	7.9	10	79	11	52	63	2	0	34	1.09
6860125--6860200	19	4.2	19	71	21	65	61	2	0	35	1.10
6860598--6860643	19	2.3	20	88	3	67	67	0	2	30	1.03
6860760--6860862	19	5.3	19	70	18	70	33	3	4	58	1.38
6860792--6860863	21	3.5	21	76	16	71	36	4	4	55	1.38
6860821--6860870	21	2.4	22	83	12	70	36	0	6	58	1.23
6864764--6864806	7	6.7	6	86	7	50	62	2	13	20	1.42
6865099--6865172	3	24.7	3	94	0	130	0	0	64	35	0.94
6865360--6865442	43	1.9	43	90	0	130	42	15	7	34	1.75
6867265--6867329	16	4.1	16	70	5	51	38	12	12	36	1.80
6867297--6867329	15	2.1	17	88	11	52	45	12	9	33	1.73
6869708--6869762	24	2.2	25	87	3	76	21	20	16	41	1.90
6876854--6876911	24	2.4	25	76	5	64	25	17	13	43	1.86
6879742--6880327	293	2.0	293	99	0	1163	29	24	15	30	1.96
6886385--6886427	21	2.0	21	86	8	61	41	2	11	44	1.53
6886427--6886531	26	3.9	27	70	14	74	59	0	2	37	1.19
6886522--6886558	19	2.0	20	84	10	51	54	2	2	40	1.29
6886787--6886870	20	4.2	20	74	5	64	34	3	3	58	1.33
6886790--6886852	10	6.5	10	73	12	51	33	1	3	61	1.21
6886897--6886940	20	2.2	20	91	0	70	36	34	9	20	1.84
6909654--6909694	13	2.8	16	75	21	52	7	14	24	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6911135--6911168	5	6.8	5	87	12	52	14	0	2	82	0.79
6912253--6912489	116	2.0	116	98	0	456	31	18	13	35	1.91
6912503--6913070	288	2.0	288	91	1	933	29	23	11	34	1.90
6917727--6918221	164	3.0	164	94	1	859	33	15	19	31	1.93
6925777--6925807	16	1.9	16	93	0	53	6	19	25	48	1.72
6938786--6938830	17	2.6	17	82	13	56	46	0	4	48	1.22
6943948--6944366	158	2.6	159	80	3	495	20	13	23	42	1.87
6943948--6944416	161	2.9	156	77	7	478	21	12	24	41	1.88
6948640--6948709	35	2.0	35	100	0	140	42	25	11	20	1.85
6949354--6949401	15	3.3	15	76	23	57	12	33	33	20	1.90
6957697--6957751	19	2.9	19	88	0	83	45	16	25	12	1.83
6957706--6957887	21	8.9	21	76	7	124	46	15	19	18	1.85
6957775--6957883	42	2.6	42	86	0	146	47	14	19	18	1.82
6957856--6957904	21	2.3	21	82	0	62	48	14	22	14	1.79
6959135--6959200	33	2.0	33	100	0	132	30	27	21	21	1.98
6960766--6961137	69	5.4	69	74	4	268	31	26	23	18	1.98
6960815--6961137	138	2.4	137	81	4	339	32	26	23	17	1.97
6961174--6961206	14	2.4	14	100	0	66	39	33	6	21	1.78
6965684--6965745	29	2.1	29	82	5	72	16	19	37	27	1.93
6969131--6969181	25	2.0	25	92	0	84	37	0	3	58	1.16
6969602--6969737	12	13.1	10	83	13	81	68	0	31	0	0.90
6969624--6969719	3	32.3	3	92	6	160	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6969903--6970021	60	2.0	60	94	0	211	31	0	12	54	1.44
6970271--6970298	3	9.3	3	100	0	56	64	0	0	35	0.94
6971811--6971836	6	4.3	6	100	0	52	30	38	30	0	1.58
6971999--6972097	33	3.0	33	84	0	135	12	44	15	28	1.82
6972388--6972483	27	3.6	27	92	0	156	23	28	23	23	2.00
6979780--6979832	27	2.0	27	88	0	79	24	20	22	32	1.98
6991413--6992078	37	18.0	37	98	0	1269	27	19	15	37	1.92
7017235--7017280	23	2.0	22	84	16	58	43	21	0	34	1.53
7017448--7017546	51	1.9	51	91	0	162	33	29	16	21	1.95
7022804--7022836	17	1.9	17	88	11	50	24	0	3	72	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135