genome.fa.s8.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  37  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14711067--14711756	231	3.0	230	91	0	1101	21	13	31	34	1.91
14713706--14713852	72	2.0	73	98	1	287	29	22	5	42	1.76
14714514--14714565	26	2.0	26	100	0	104	61	0	7	30	1.24
14715436--14715518	3	28.0	3	77	11	82	34	2	2	60	1.23
14716780--14716884	38	2.6	41	71	20	105	20	19	26	33	1.96
14717570--14718011	217	2.0	220	92	3	728	34	7	16	42	1.75
14718422--14718462	18	2.3	18	87	8	57	21	0	2	75	0.92
14718424--14718462	17	2.2	18	86	4	53	20	0	2	76	0.90
14723598--14723670	24	3.0	25	78	9	71	34	21	24	19	1.96
14723654--14723700	24	2.0	24	91	0	76	36	14	25	23	1.93
14723753--14723809	26	2.3	25	85	11	73	38	26	21	14	1.91
14726145--14726195	21	2.4	22	80	12	61	33	0	3	62	1.13
14726184--14726232	16	2.9	17	75	6	55	55	2	4	38	1.31
14736305--14736399	23	4.0	24	81	11	108	37	21	14	26	1.92
14736305--14736534	47	5.1	47	73	11	196	38	20	15	26	1.91
14736317--14736482	84	2.0	83	95	1	296	41	19	13	25	1.88
14736398--14736534	23	5.9	23	78	3	148	39	18	15	26	1.91
14736398--14736532	70	1.9	70	93	0	234	39	18	15	26	1.91
14737294--14737392	41	2.5	40	85	3	126	25	24	11	39	1.88
14739750--14739798	25	2.0	25	100	0	98	12	28	16	42	1.84
14750162--14750186	12	2.1	12	100	0	50	24	28	16	32	1.96
14759282--14759390	38	2.8	40	93	5	188	52	27	2	17	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14759518--14759592	37	2.0	37	84	5	98	36	6	16	41	1.74
14759591--14759624	9	3.8	9	88	0	50	23	8	29	38	1.85
14760796--14760853	22	2.5	23	83	5	64	50	1	3	44	1.29
14760821--14760984	68	2.4	67	89	7	244	43	4	8	43	1.54
14760926--14760953	9	3.1	9	100	0	56	32	0	10	57	1.33
14762445--14762642	83	2.3	85	93	3	328	26	13	18	41	1.87
14763034--14763069	17	2.1	17	89	5	54	19	2	11	66	1.35
14763753--14763786	14	2.5	14	90	4	52	0	14	0	85	0.60
14766256--14766320	5	13.2	5	81	15	82	38	0	1	60	1.07
14770058--14770093	16	2.2	16	90	0	54	30	16	5	47	1.70
14778495--14778570	27	2.8	27	91	0	116	42	25	6	26	1.79
14778495--14778570	9	8.4	9	83	0	80	42	25	6	26	1.79
14779157--14779212	29	1.9	29	92	7	96	25	0	12	62	1.30
14780949--14781997	535	2.0	535	100	0	2098	27	26	15	29	1.96
14786652--14786698	22	2.3	20	82	13	60	65	0	2	31	1.04
14786654--14786700	21	2.2	22	88	3	69	70	0	2	27	0.99
14793092--14793162	24	2.9	24	95	2	124	16	21	25	36	1.94
14801893--14801943	25	2.0	25	84	0	66	37	15	27	19	1.92
14814344--14814368	10	2.5	10	100	0	50	60	0	0	40	0.97
14830055--14830148	47	2.0	47	100	0	188	31	17	21	29	1.96
14862095--14862152	3	19.3	3	100	0	116	67	0	0	32	0.91
14870886--14870911	9	2.9	9	100	0	52	23	11	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14871705--14871762	25	2.3	25	82	5	64	13	24	20	41	1.89
14871830--14871903	26	2.8	26	91	0	112	20	18	22	37	1.94
14871820--14871986	26	6.6	25	71	15	80	19	23	21	35	1.95
14879690--14879723	15	2.2	16	89	5	52	67	2	0	29	1.05
14894851--14894914	31	2.1	30	85	2	83	40	0	4	54	1.21
14896485--14896523	17	2.3	17	86	0	51	15	2	10	71	1.23
14899088--14899115	3	9.3	3	100	0	56	32	0	0	67	0.91
14900501--14900548	15	2.9	16	77	22	55	62	0	0	37	0.95
14901300--14901351	21	2.4	22	84	12	63	71	15	5	7	1.29
14901304--14901351	24	2.0	24	88	4	71	70	16	6	6	1.28
14902770--14902807	13	2.7	14	88	8	51	63	5	2	28	1.30
14908477--14908615	46	3.0	46	91	0	224	34	8	26	30	1.86
14908980--14909102	33	3.7	33	79	4	131	27	23	16	32	1.96
14908962--14909103	66	2.2	66	94	0	248	26	22	16	33	1.96
14909084--14909123	20	2.0	20	100	0	80	25	30	15	30	1.95
14932332--14932391	31	1.9	31	93	0	102	45	16	6	31	1.74
14934630--14934698	22	3.0	22	75	19	77	34	17	26	21	1.95
14934648--14934709	25	2.5	25	94	0	106	37	16	24	22	1.94
14942490--14942549	30	2.0	30	83	0	75	36	3	11	48	1.56
14942610--14942656	25	2.0	23	84	16	60	44	2	4	48	1.34
14945454--14945722	124	2.2	124	83	3	326	29	13	23	33	1.93
14947481--14947536	22	2.5	23	77	8	62	66	5	0	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14947633--14947688	28	2.0	29	92	3	96	60	1	0	37	1.07
14947730--14947771	22	1.9	22	90	0	66	33	0	33	33	1.58
14947721--14947823	52	2.0	51	83	9	129	34	0	32	33	1.58
14947773--14947864	22	4.2	23	82	8	111	42	0	27	30	1.56
14947773--14947864	44	2.1	44	85	4	123	42	0	27	30	1.56
14948565--14948677	38	2.9	39	87	6	169	38	2	21	38	1.67
14952895--14952934	20	2.0	20	90	0	62	32	17	10	40	1.83
14953102--14953210	37	2.8	40	75	9	116	35	22	15	26	1.94
14953370--14953416	24	2.0	24	84	16	62	51	17	0	31	1.46
14954076--14954139	17	3.8	17	74	12	51	1	21	3	73	1.06
14954160--14954260	35	2.8	36	79	10	109	44	5	0	49	1.26
14954202--14954258	28	2.0	28	90	6	89	45	1	0	52	1.11
14954207--14954245	20	2.0	19	85	5	51	48	2	0	48	1.15
14956988--14957068	25	3.2	25	94	0	135	16	24	22	37	1.93
14956988--14957078	25	3.8	24	89	4	87	16	25	21	36	1.94
14958071--14958171	51	2.0	51	92	0	166	34	26	8	29	1.87
14958342--14958416	33	2.3	33	83	4	89	22	49	2	25	1.63
14959005--14959215	117	1.8	117	92	0	359	42	23	10	23	1.85
14959402--14959446	16	2.8	16	93	3	72	31	0	28	40	1.57
14960056--14960107	18	2.8	18	83	13	70	36	0	3	59	1.16
14965657--14965779	50	2.5	49	82	5	131	27	20	30	21	1.98
14966050--14966088	20	2.0	20	89	0	60	53	2	25	17	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14977533--14977558	7	3.7	7	100	0	52	0	15	0	84	0.62
15000099--15000123	8	3.1	8	100	0	50	76	0	0	24	0.80
15000229--15000514	143	2.0	143	91	0	464	25	21	8	44	1.79
15013661--15014395	368	2.0	368	99	0	1461	41	7	14	37	1.74
15018711--15018737	3	9.0	3	100	0	54	66	0	0	33	0.92
15040443--15040532	46	2.0	46	97	0	171	37	17	13	31	1.89
15040827--15040891	30	2.1	31	83	8	80	41	6	7	44	1.58
15041084--15041117	10	3.4	10	91	0	50	17	5	2	73	1.16
15057586--15057686	40	2.5	40	93	0	166	25	20	23	29	1.99
15059345--15059383	21	2.0	20	85	14	55	69	2	0	28	1.02
15059556--15059732	84	2.1	85	87	5	250	40	12	14	32	1.83
15062786--15062947	67	2.4	68	92	2	274	25	11	5	56	1.56
15067972--15068433	27	17.5	27	75	11	318	36	18	21	23	1.95
15067973--15068414	54	8.4	54	79	9	351	37	18	20	23	1.94
15068025--15068433	81	5.2	81	80	6	419	36	18	21	23	1.95
15068237--15068433	107	1.8	106	87	5	290	34	18	23	22	1.96
15068708--15068916	32	6.5	31	79	5	195	17	20	24	37	1.94
15068740--15068942	96	2.1	95	83	2	246	18	20	23	37	1.94
15070760--15070809	25	2.0	25	100	0	100	36	12	20	32	1.89
15074364--15074399	6	6.2	6	90	6	56	19	11	0	69	1.18
15074364--15074399	17	2.1	18	89	5	56	19	11	0	69	1.18
15091868--15091987	64	1.9	64	87	0	177	33	24	21	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15100796--15100824	2	15.0	2	92	7	51	48	0	0	51	1.00
15104311--15104395	24	3.5	24	69	15	68	20	15	38	25	1.91
15106720--15106756	19	1.9	19	88	0	56	35	5	0	59	1.20
15106860--15106912	25	2.1	25	82	0	61	22	7	0	69	1.13
15111820--15111867	7	7.0	7	80	20	57	68	0	14	16	1.21
15112971--15113081	45	2.6	41	78	7	105	31	18	20	29	1.96
15124321--15124373	2	26.5	2	100	0	106	0	0	49	50	1.00
15132088--15132334	127	1.9	127	95	0	440	48	12	19	19	1.80
15137108--15137149	2	21.0	2	100	0	84	50	0	0	50	1.00
15137112--15137189	26	3.0	26	86	3	95	39	6	7	46	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135