Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  119  of  135  ( 16172 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43238021--43238068
16
3.1
16
87
3
71
0
18
2
79
0.84
43238168--43238218
19
2.7
19
84
6
59
1
15
9
72
1.19
43238317--43238384
10
6.7
10
84
3
73
0
20
0
79
0.73
43238308--43238391
23
3.7
22
81
12
89
0
23
0
76
0.79
43238932--43239067
30
4.6
30
77
4
134
38
5
27
28
1.78
43238951--43239067
58
2.0
59
88
1
173
39
3
27
29
1.73
43248504--43248537
17
2.0
17
88
0
50
50
0
2
47
1.16
43250524--43250565
8
5.0
8
78
21
50
64
0
0
35
0.94
43251058--43251106
20
2.5
20
87
12
66
63
6
0
30
1.19
43251556--43251609
18
2.9
18
75
5
63
33
0
1
64
1.04
43261615--43261639
5
5.0
5
100
0
50
60
0
0
40
0.97
43261998--43262082
30
2.8
31
86
12
115
48
1
14
36
1.51
43262422--43262456
10
3.4
10
92
4
52
17
2
2
77
1.02
43273503--43273556
24
2.2
24
83
6
65
64
1
7
25
1.30
43277454--43277488
16
2.2
16
89
0
52
25
8
17
48
1.75
43277460--43277493
16
2.1
16
88
0
50
23
8
17
50
1.74
43280640--43280674
3
11.7
3
90
0
52
60
0
37
2
1.12
43280894--43280924
2
15.5
2
100
0
62
51
0
0
48
1.00
43290356--43290409
25
2.2
25
100
0
108
46
12
14
25
1.81
43291428--43291472
21
2.1
22
87
4
65
44
2
0
53
1.13
43291653--43291716
10
6.2
10
74
13
58
31
4
1
62
1.25
43295754--43295826
30
2.4
30
82
11
87
52
20
6
20
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43296538--43296576
19
2.0
20
95
5
71
23
20
5
51
1.67
43300436--43300477
19
2.2
19
87
8
59
21
0
4
73
1.01
43302090--43302122
14
2.2
16
89
10
52
0
0
18
81
0.68
43302213--43302509
147
2.0
148
99
0
587
40
10
7
42
1.67
43303157--43303224
29
2.4
27
76
13
73
48
8
14
27
1.74
43303859--43304043
92
2.0
92
88
0
271
28
22
20
28
1.99
43304396--43304429
3
11.3
3
100
0
68
67
0
0
32
0.91
43306203--43306240
19
2.0
19
94
0
67
26
21
28
23
1.99
43310447--43310478
2
16.0
2
100
0
64
50
0
0
50
1.00
43313988--43314030
2
21.5
2
100
0
86
48
0
0
51
1.00
43314382--43314427
23
2.0
24
87
12
69
34
4
0
60
1.16
43315080--43315108
13
2.1
14
93
6
51
0
6
3
89
0.57
43320607--43320928
160
2.0
160
99
0
635
40
13
16
29
1.86
43324808--43324929
44
2.7
43
80
8
129
29
21
19
29
1.98
43324937--43325099
51
3.3
50
73
11
147
24
25
21
28
1.99
43325033--43325169
72
1.9
72
83
3
177
24
27
16
31
1.96
43325215--43325634
132
3.2
132
93
1
725
26
25
19
28
1.99
43326824--43326867
8
5.5
8
82
17
56
0
13
0
86
0.57
43326830--43326866
14
2.7
14
95
4
67
0
13
0
86
0.57
43326824--43326867
14
3.4
12
85
11
52
0
13
0
86
0.57
43326964--43326996
14
2.3
15
89
5
50
24
33
15
27
1.95
43330012--43330056
19
2.4
19
85
7
56
37
11
22
28
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43330549--43330576
5
5.6
5
100
0
56
82
17
0
0
0.68
43338597--43338623
7
3.9
7
100
0
54
88
0
11
0
0.50
43342014--43343998
643
3.0
659
92
4
3322
40
17
12
29
1.86
43346649--43346703
21
2.6
21
79
0
65
16
25
23
34
1.95
43348965--43349002
3
13.0
3
94
5
69
68
0
31
0
0.90
43354972--43355014
16
2.8
15
77
19
52
25
13
6
53
1.65
43354969--43355014
15
3.0
15
76
17
58
23
13
6
56
1.60
43363972--43364027
29
1.9
29
85
0
76
23
23
30
23
1.99
43371421--43371496
10
7.6
10
78
15
61
34
1
0
64
1.02
43371384--43371530
72
2.1
70
87
5
206
33
2
0
63
1.10
43371399--43371497
11
9.5
11
75
20
70
36
3
0
60
1.12
43376112--43376784
334
2.0
334
99
0
1339
33
13
24
28
1.94
43377448--43377506
27
2.2
27
90
6
93
23
16
37
22
1.94
43378402--43378589
94
2.0
94
95
0
340
30
18
19
31
1.96
43379325--43379370
3
15.3
3
100
0
92
65
0
0
34
0.93
43379755--43379802
3
16.0
3
100
0
96
66
0
0
33
0.92
43388081--43388153
33
2.2
33
80
2
85
39
17
8
34
1.80
43389053--43389145
46
2.0
46
100
0
186
48
21
15
15
1.81
43398822--43398856
18
1.9
18
88
0
52
45
0
2
51
1.16
43399690--43399740
21
2.4
21
86
0
75
45
21
3
29
1.70
43399690--43399749
21
2.9
21
82
5
59
45
20
5
30
1.72
43399744--43399825
43
2.0
42
90
4
130
41
13
9
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43402456--43402481
5
5.2
5
100
0
52
42
19
19
19
1.90
43403212--43403266
28
1.9
29
88
3
85
36
0
43
20
1.52
43405104--43405128
5
5.0
5
100
0
50
20
0
80
0
0.72
43405315--43405345
9
3.4
9
90
0
53
38
22
12
25
1.90
43405427--43405463
18
2.1
18
100
0
74
5
40
5
48
1.49
43406520--43406564
21
2.1
21
100
0
90
22
15
28
33
1.95
43408910--43408969
9
6.9
9
79
11
54
48
16
0
35
1.47
43409085--43409109
7
3.6
7
100
0
50
32
12
16
40
1.84
43413832--43414000
84
2.0
84
98
0
329
30
18
14
36
1.90
43435752--43435794
17
2.6
16
82
10
50
46
4
2
46
1.36
43435743--43435795
21
2.6
21
78
3
54
47
5
1
45
1.37
43436643--43436667
12
2.1
12
100
0
50
32
24
0
44
1.54
43436982--43437034
27
2.0
27
96
0
97
35
13
7
43
1.72
43442791--43442834
15
3.0
15
83
3
54
29
20
25
25
1.99
43442792--43442894
29
3.6
29
77
4
109
23
17
31
28
1.97
43445898--43445928
2
16.0
2
93
6
55
51
0
0
48
1.00
43447146--43447183
15
2.5
15
87
12
51
26
10
0
63
1.27
43451812--43451851
20
2.0
20
95
0
71
32
25
12
30
1.92
43458399--43458427
14
2.1
14
100
0
58
27
13
37
20
1.91
43459546--43459684
50
2.8
51
75
6
131
30
22
22
24
1.99
43460668--43460705
15
2.5
15
87
12
51
26
10
0
63
1.27
43462084--43462120
2
18.5
2
94
0
65
48
0
2
48
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43464543--43464572
3
10.0
3
100
0
60
66
0
33
0
0.92
43464857--43464898
18
2.3
18
91
0
66
33
0
14
52
1.42
43464960--43465001
21
2.0
21
85
0
57
47
11
0
40
1.40
43473951--43474097
71
2.1
72
98
1
287
35
13
10
40
1.80
43474087--43474152
9
6.8
9
73
26
55
43
0
1
54
1.09
43475508--43475546
18
2.2
17
86
4
51
43
10
7
38
1.67
43475517--43475577
26
2.2
28
82
5
72
45
11
6
36
1.66
43479312--43479351
21
1.9
21
85
10
55
15
27
7
50
1.70
43486665--43486699
15
2.3
15
90
0
52
11
8
42
37
1.72
43494066--43494105
21
1.9
21
100
0
80
25
22
2
50
1.62
43493940--43494224
145
2.0
145
83
2
367
31
23
12
31
1.92
43496198--43496271
29
2.6
29
85
8
91
35
0
1
63
1.03
43496227--43496287
9
6.4
9
75
9
59
34
1
0
63
1.04
43496227--43496287
19
3.2
18
80
15
70
34
1
0
63
1.04
43498906--43498940
2
17.5
2
100
0
70
51
0
48
0
1.00
43512222--43512271
22
2.3
22
85
0
64
72
4
2
22
1.12
43512734--43512777
18
2.4
18
92
0
70
13
2
54
29
1.51
43513175--43513209
14
2.5
14
90
0
52
42
11
5
40
1.65
43513963--43514021
28
2.0
31
87
9
88
57
1
0
40
1.09
43517326--43517363
15
2.4
17
86
8
53
65
5
0
28
1.14
43517638--43517682
18
2.3
20
85
11
58
62
13
0
24
1.31
43517646--43517690
21
2.2
20
84
4
54
60
17
2
20
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43520315--43520349
18
1.9
18
88
11
54
51
8
5
34
1.56
43520748--43521010
105
2.6
100
82
7
300
32
17
23
25
1.97
43524453--43524523
35
2.0
35
94
5
126
50
2
22
23
1.62
43525825--43525909
26
3.5
25
63
16
61
60
10
15
14
1.60
43525809--43525935
47
2.7
47
100
0
254
59
11
15
14
1.62
43527317--43527351
15
2.3
15
100
0
70
22
28
5
42
1.76
43557766--43558522
89
8.5
89
87
3
1010
30
18
24
25
1.98
43560387--43560428
19
2.3
18
84
12
50
16
9
2
71
1.23
43560397--43560668
135
2.0
137
92
2
458
21
8
12
56
1.62
43560613--43560645
15
2.2
15
100
0
66
27
0
24
48
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135