genome.fa.s8.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  56  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22890161--22890221	29	2.1	30	93	3	106	32	1	13	52	1.50
22890447--22890488	16	2.7	15	85	7	57	38	2	2	57	1.25
22891417--22891460	16	2.8	15	83	10	61	59	2	2	36	1.23
22907320--22907377	31	2.0	30	83	10	75	43	1	20	34	1.62
22909325--22909464	57	2.3	60	84	9	180	31	21	24	22	1.98
22910550--22910583	17	2.1	17	88	5	52	50	0	17	32	1.47
22911451--22911550	42	2.4	42	87	0	146	36	9	27	28	1.87
22916012--22916037	2	13.0	2	100	0	52	50	0	0	50	1.00
22935002--22935037	12	3.0	12	91	0	54	0	50	11	38	1.38
22937262--22937338	13	5.9	13	84	0	91	25	9	28	36	1.87
22940200--22940319	64	1.9	64	82	3	152	22	20	24	32	1.98
22947235--22947265	12	2.7	11	90	9	53	0	19	0	80	0.71
22947397--22947463	32	2.1	32	86	2	91	43	10	13	32	1.78
22953691--22953730	22	1.9	21	85	10	55	27	10	5	57	1.52
22958173--22958304	65	2.0	64	97	1	246	31	14	18	35	1.91
22962055--22962145	45	2.0	45	95	0	164	48	14	8	28	1.73
22973748--22973815	13	5.2	13	71	7	57	33	19	1	45	1.59
22973750--22973803	27	2.0	27	85	0	72	33	20	1	44	1.62
22973707--22973815	53	2.1	53	84	6	141	34	17	2	44	1.63
22980812--22980864	8	7.0	8	79	12	58	39	28	0	32	1.57
22980816--22980856	21	2.0	21	95	0	73	36	31	0	31	1.58
23000927--23000955	2	14.5	2	100	0	58	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23002631--23002664	10	3.5	10	84	8	52	32	0	0	67	0.91
23003136--23003561	114	3.7	114	82	3	509	32	18	23	25	1.97
23003148--23003560	227	1.8	226	90	0	664	31	18	23	26	1.97
23003489--23003634	74	2.0	73	82	6	179	30	17	23	28	1.97
23003340--23003737	188	2.1	188	89	0	609	31	17	22	27	1.97
23003529--23003878	114	3.1	112	79	8	395	30	18	23	28	1.97
23003545--23003895	113	3.1	112	78	9	372	30	18	23	26	1.98
23008525--23008590	21	3.2	20	82	8	78	36	18	40	4	1.71
23009464--23009734	43	6.4	42	89	4	350	24	23	21	30	1.99
23009464--23009734	85	3.2	85	88	3	377	24	23	21	30	1.99
23019883--23019920	12	3.1	12	88	3	58	26	15	36	21	1.93
23032375--23032431	3	18.7	3	96	3	105	33	0	0	66	0.92
23041561--23041596	12	3.0	12	100	0	72	8	41	0	50	1.33
23046639--23046679	3	14.0	3	94	5	75	68	0	31	0	0.90
23052107--23052134	13	2.2	13	100	0	56	50	0	0	50	1.00
23062902--23062962	25	2.5	25	78	10	72	68	6	8	16	1.35
23062951--23062981	16	1.9	16	93	0	53	80	6	9	3	0.99
23066723--23066852	69	1.9	69	96	0	242	40	15	17	26	1.90
23072010--23072039	15	2.0	15	93	0	51	56	0	0	43	0.99
23073300--23073328	3	9.7	3	100	0	58	65	0	34	0	0.93
23079952--23080008	25	2.4	24	82	8	71	49	3	5	42	1.42
23088866--23089533	334	2.0	334	99	0	1327	38	13	13	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23089618--23089682	15	4.3	15	73	7	51	40	6	3	50	1.43
23094421--23094482	24	2.5	24	84	2	70	19	9	4	66	1.39
23094599--23094632	14	2.5	14	95	4	61	50	35	0	14	1.44
23097906--23097939	16	2.1	16	88	5	50	70	0	20	8	1.13
23126467--23126515	23	2.1	23	84	3	62	34	0	6	59	1.22
23126482--23126545	23	2.8	22	80	15	76	35	0	3	60	1.12
23133343--23133395	3	17.7	3	100	0	106	0	33	0	66	0.92
23141994--23142114	11	11.0	11	100	0	242	36	0	0	63	0.95
23142480--23142547	21	3.3	21	68	15	61	32	8	20	38	1.84
23142440--23142547	40	2.7	40	82	5	119	32	7	19	40	1.79
23142751--23142846	45	2.1	45	88	3	140	21	17	18	41	1.90
23145462--23145523	21	2.9	22	72	15	58	32	3	6	58	1.40
23145463--23145531	21	3.2	21	71	18	54	30	4	5	59	1.40
23146680--23146906	43	5.2	42	79	12	226	25	25	19	28	1.99
23146680--23146902	86	2.5	85	81	11	261	26	25	19	29	1.98
23147239--23147306	21	3.2	21	87	0	100	4	42	17	35	1.69
23148380--23148768	41	9.5	41	90	4	599	37	27	20	15	1.92
23148328--23148768	123	3.6	121	88	5	556	36	26	20	17	1.94
23168794--23168824	6	5.2	6	96	0	53	3	16	48	32	1.62
23174695--23174761	30	2.3	29	81	2	80	58	11	0	29	1.34
23175585--23175613	3	9.7	3	100	0	58	0	0	31	68	0.89
23178630--23178711	40	2.0	40	97	0	155	39	17	4	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23179013--23179220	48	4.3	48	83	0	236	22	29	22	26	1.99
23193411--23193477	29	2.3	29	97	0	125	25	13	28	32	1.93
23210818--23210853	17	2.1	17	89	5	54	52	19	2	25	1.59
23210742--23210942	98	2.1	99	93	1	343	43	22	6	26	1.77
23216502--23216560	23	2.5	23	80	2	73	28	20	18	32	1.96
23226831--23226855	12	2.1	12	100	0	50	48	0	44	8	1.32
23235909--23235950	21	2.0	21	85	0	57	38	2	4	54	1.34
23235884--23235982	51	1.9	52	83	2	128	41	3	2	53	1.28
23236235--23236271	18	2.1	18	100	0	74	72	16	5	5	1.21
23243026--23243132	31	3.5	30	75	12	103	22	19	18	39	1.93
23245782--23245823	6	7.0	6	94	0	57	19	45	30	4	1.71
23256071--23256114	17	2.6	18	82	10	56	65	0	0	34	0.93
23257150--23257210	32	1.9	32	89	0	95	45	6	8	39	1.60
23258470--23258502	16	2.0	17	88	5	50	72	0	0	27	0.85
23261272--23261322	15	3.4	14	82	15	57	52	1	29	15	1.54
23272312--23272348	3	12.3	3	100	0	74	67	0	0	32	0.91
23274467--23274494	9	3.1	9	100	0	56	32	0	0	67	0.91
23274561--23274587	11	2.5	11	100	0	54	62	0	0	37	0.95
23287072--23287105	17	2.0	17	94	0	59	26	32	23	17	1.97
23287574--23287750	39	4.3	43	66	22	117	51	3	6	38	1.44
23287562--23287770	61	3.4	61	98	0	400	52	3	6	37	1.44
23297861--23297926	3	22.0	3	96	0	123	65	0	1	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23299468--23299751	44	6.3	44	76	5	246	29	24	13	32	1.93
23299518--23299825	136	2.3	137	84	5	383	30	23	14	31	1.94
23299922--23300190	134	2.0	135	98	0	522	34	11	19	34	1.88
23301637--23301778	51	2.9	49	86	11	195	12	23	17	45	1.83
23307565--23307630	3	22.0	3	96	0	123	65	0	1	33	1.02
23311225--23311297	35	2.0	37	89	5	114	64	0	1	34	1.02
23317876--23317994	58	2.0	59	91	1	195	36	7	18	37	1.79
23319963--23320012	9	5.6	9	90	0	64	24	4	24	48	1.68
23322561--23322694	66	2.0	67	98	1	261	34	8	19	37	1.83
23328637--23328755	61	1.9	62	88	5	179	38	2	7	51	1.44
23332036--23332060	6	4.2	6	100	0	50	64	20	16	0	1.30
23338760--23338804	21	2.1	21	95	0	81	20	37	13	28	1.90
23338717--23338849	66	2.0	66	86	0	185	24	32	18	25	1.97
23338787--23338949	45	3.6	45	85	3	220	25	28	21	25	1.99
23339399--23339429	15	2.1	15	93	0	53	35	12	9	41	1.76
23352149--23352355	103	2.0	104	99	0	407	36	6	9	46	1.63
23355424--23355611	93	2.0	94	98	1	369	54	7	4	32	1.49
23366166--23366218	26	2.0	26	89	7	81	41	5	1	50	1.36
23378540--23378574	6	5.8	6	100	0	70	34	0	17	48	1.47
23395411--23395525	4	25.2	4	73	22	70	66	0	31	1	1.01
23395411--23395515	18	5.9	18	75	20	73	67	0	30	1	1.01
23395434--23395512	5	15.4	5	73	8	52	69	0	29	1	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23395439--23395494	11	5.4	11	82	18	66	66	0	32	1	1.03
23395410--23395580	30	5.7	30	71	20	99	66	0	32	1	1.04
23395417--23395538	16	8.3	14	71	21	56	65	0	32	1	1.02
23395442--23395554	20	5.8	19	71	21	67	68	0	30	0	0.96
23395590--23395628	19	2.0	20	85	5	53	30	0	7	61	1.24
23403262--23403300	20	2.0	21	85	10	55	66	10	0	23	1.22
23403422--23403497	27	2.8	27	84	4	91	18	30	28	22	1.97
23403543--23403613	26	2.7	26	89	8	108	46	0	12	40	1.42
23412961--23413099	46	3.0	46	88	4	217	30	25	9	35	1.87
23417071--23417294	111	2.0	111	99	0	439	30	14	25	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135