genome.fa.s8.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  129  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46465339--46465387	16	3.1	16	90	0	80	38	4	34	22	1.73
46465366--46465456	45	2.0	44	89	6	139	34	5	26	34	1.80
46470425--46470467	18	2.3	19	88	8	61	72	2	0	25	0.97
46470590--46470665	10	7.7	10	70	14	59	65	3	0	30	1.10
46470494--46470665	49	3.5	48	77	13	136	63	4	1	30	1.25
46470495--46470626	9	14.6	9	65	23	55	62	4	2	30	1.27
46471482--46471516	9	4.0	9	88	7	54	48	0	0	51	1.00
46471482--46471516	8	4.1	8	89	10	52	48	0	0	51	1.00
46473474--46473522	25	2.0	25	84	8	64	48	2	26	22	1.61
46473957--46474019	19	3.3	18	75	20	65	58	0	4	36	1.19
46474006--46474036	9	3.4	9	95	0	53	67	0	0	32	0.91
46474483--46474513	9	3.4	9	95	0	53	67	0	0	32	0.91
46473957--46474912	477	2.0	478	99	0	1905	38	12	14	34	1.84
46484787--46485092	154	2.0	154	96	0	567	29	14	26	29	1.95
46503199--46503240	21	2.0	21	90	0	66	45	16	2	35	1.61
46506809--46506846	20	1.9	20	88	0	58	31	31	2	34	1.72
46521518--46521666	72	2.0	73	90	2	237	26	11	19	42	1.85
46521903--46522563	37	18.1	37	76	10	521	26	21	15	36	1.93
46521903--46522563	73	9.1	73	78	8	616	26	21	15	36	1.93
46521862--46522562	148	4.8	149	78	8	599	25	21	15	37	1.93
46525160--46525201	15	2.8	15	85	7	59	0	33	9	57	1.31
46530706--46530761	24	2.3	24	78	12	60	35	1	5	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46532522--46532571	23	2.2	23	88	0	73	24	18	14	44	1.86
46532752--46532794	23	2.0	23	86	9	63	37	16	11	34	1.85
46534058--46534086	3	9.7	3	100	0	58	0	34	0	65	0.93
46537842--46537881	20	2.0	20	90	0	62	50	12	10	27	1.72
46537830--46537896	34	1.9	35	87	3	100	46	11	8	32	1.72
46539391--46539450	30	2.0	31	86	3	86	40	0	40	20	1.52
46539658--46539694	9	4.1	9	92	0	65	29	10	13	45	1.77
46539746--46539776	9	3.4	9	90	0	53	38	22	12	25	1.90
46547301--46547332	5	6.4	5	100	0	64	81	0	0	18	0.70
46548120--46548219	51	1.9	52	90	6	159	32	18	8	42	1.79
46567574--46567710	49	2.8	48	82	6	159	29	21	24	24	1.99
46572950--46572996	20	2.3	21	81	3	60	46	2	6	44	1.40
46586425--46586596	4	43.0	4	97	0	326	25	1	25	48	1.58
46594660--46594688	14	2.0	15	93	6	51	68	6	0	24	1.13
46604069--46604371	25	12.3	25	89	5	476	44	0	12	42	1.42
46604424--46604548	23	5.5	23	90	3	200	50	25	1	22	1.58
46604412--46604548	44	3.1	44	90	2	211	48	26	2	23	1.63
46604881--46604927	23	2.0	23	91	0	76	51	19	0	29	1.47
46604983--46605051	27	2.6	26	71	22	70	43	5	1	49	1.35
46604921--46605165	116	2.1	118	92	2	406	40	8	6	44	1.61
46608043--46608420	125	3.0	125	92	0	605	32	22	14	30	1.94
46608976--46609007	14	2.3	14	94	0	55	15	15	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46614807--46614901	42	2.3	42	88	0	145	28	25	7	38	1.82
46614981--46615046	33	2.0	33	96	0	123	37	24	4	33	1.76
46616290--46616416	65	2.0	64	96	1	236	36	6	7	50	1.55
46622109--46622152	16	2.6	18	79	17	58	43	25	0	31	1.55
46626248--46626324	33	2.3	33	86	0	109	24	6	50	18	1.70
46630254--46630327	32	2.3	32	83	0	94	29	8	17	44	1.77
46630351--46630411	17	3.6	17	77	4	61	29	1	29	39	1.67
46632134--46632162	5	5.8	5	100	0	58	17	0	0	82	0.66
46632623--46632660	20	1.9	20	88	0	58	57	0	5	36	1.21
46637480--46637529	21	2.5	20	83	9	66	12	2	22	64	1.37
46638777--46638813	18	2.1	18	89	0	56	29	18	13	37	1.90
46639190--46639234	8	5.6	8	89	0	72	84	0	0	15	0.62
46645769--46645816	18	2.7	18	100	0	96	35	14	12	37	1.84
46646201--46646372	72	2.4	71	84	4	247	25	6	13	54	1.64
46655025--46655136	56	2.0	56	98	0	215	35	31	7	25	1.83
46657624--46657664	21	2.0	21	90	0	64	19	26	4	48	1.69
46661166--46661241	37	2.0	38	84	2	100	26	22	22	28	1.99
46665137--46665176	21	2.0	20	85	14	55	30	15	10	45	1.78
46666548--46666631	44	2.0	42	93	6	143	45	16	4	33	1.69
46678486--46678515	15	1.9	16	93	6	53	33	36	0	30	1.58
46679228--46679313	42	2.0	42	100	0	172	41	20	2	34	1.65
46679828--46679892	28	2.2	31	83	8	82	44	3	7	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46680108--46680165	28	2.1	28	80	6	64	34	3	6	55	1.44
46683467--46683613	44	3.3	44	73	15	149	26	22	20	30	1.98
46683460--46683665	89	2.3	88	87	2	297	27	21	18	32	1.97
46683511--46683665	44	3.5	44	76	5	177	28	21	18	32	1.96
46684932--46684963	13	2.3	15	84	15	50	12	15	0	71	1.14
46684933--46684964	14	2.4	13	94	5	55	12	18	0	68	1.20
46707583--46707613	14	2.2	14	94	0	53	41	3	25	29	1.71
46710045--46710163	48	2.5	48	81	0	148	31	21	15	31	1.95
46710146--46710323	96	1.9	96	84	2	241	27	21	15	35	1.94
46712958--46713035	39	2.0	39	84	0	102	42	23	6	28	1.78
46715213--46715264	25	2.1	25	82	7	61	21	17	28	32	1.96
46738406--46738437	3	10.7	3	100	0	64	31	0	0	68	0.90
46740951--46741016	35	1.9	34	87	6	98	31	9	13	45	1.75
46740965--46741004	20	2.0	20	85	0	53	27	12	12	47	1.77
46741326--46741459	42	3.3	39	70	19	128	43	23	8	25	1.81
46741313--46741478	84	2.0	84	98	0	323	43	21	8	26	1.80
46745157--46745189	6	5.5	6	96	0	57	36	0	63	0	0.95
46749691--46749732	17	2.5	17	80	3	50	40	4	0	54	1.21
46749779--46749820	14	3.2	13	87	9	59	50	0	2	47	1.14
46755901--46755955	23	2.3	25	79	17	64	40	3	9	47	1.53
46762144--46762182	7	5.1	8	84	12	55	51	0	0	48	1.00
46762143--46762182	15	2.7	15	84	0	62	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46762143--46762186	7	6.1	7	82	12	54	56	0	0	43	0.99
46762778--46762838	24	2.5	24	74	12	63	24	1	27	45	1.62
46769969--46770087	54	2.2	54	78	3	123	22	24	26	26	2.00
46771564--46771762	63	3.2	63	85	0	227	25	19	24	30	1.98
46781955--46781992	15	2.7	15	88	12	62	65	0	28	5	1.14
46782196--46782288	46	2.0	46	100	0	186	38	17	13	30	1.89
46800302--46800340	20	2.0	20	90	5	62	66	2	0	30	1.05
46801519--46801549	13	2.4	13	94	0	53	61	3	6	29	1.37
46801584--46801633	19	2.7	19	76	11	59	72	2	8	18	1.19
46813412--46813452	15	2.4	18	80	15	52	34	7	0	58	1.26
46816614--46816794	81	2.2	82	95	1	321	35	12	7	44	1.71
46819133--46819176	6	7.2	6	86	2	52	59	0	25	15	1.37
46819133--46819175	12	3.5	12	83	3	59	58	0	25	16	1.38
46819133--46819175	18	2.3	18	92	4	68	58	0	25	16	1.38
46821011--46821051	13	3.2	13	74	19	50	29	14	24	31	1.95
46820999--46821077	25	3.2	24	72	13	79	25	16	24	34	1.95
46821009--46821091	25	3.3	25	77	11	98	28	14	21	34	1.93
46822909--46822974	33	2.0	33	97	2	125	21	24	6	48	1.72
46848095--46848165	31	2.4	31	83	4	83	39	5	2	52	1.40
46859566--46859602	18	2.1	18	100	0	74	27	21	27	24	1.99
46860210--46860304	47	2.0	47	100	0	190	29	21	12	36	1.90
46864091--46864269	25	7.2	25	70	10	116	36	25	10	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46864258--46864342	26	3.4	26	69	11	70	35	21	15	28	1.93
46868676--46868734	29	2.0	29	100	0	118	28	13	23	33	1.93
46873784--46873948	74	2.2	74	94	0	294	44	36	1	17	1.57
46874108--46874153	11	4.3	11	80	5	58	86	2	10	0	0.64
46874107--46874153	20	2.4	19	89	3	67	85	2	12	0	0.70
46886380--46886421	15	2.9	14	89	6	66	19	2	0	78	0.86
46886515--46886548	14	2.3	15	85	10	52	20	2	2	73	1.09
46886602--46886650	21	2.5	20	87	9	66	14	6	6	73	1.22
46886596--46886650	18	2.9	18	83	8	65	12	7	5	74	1.20
46887535--46887566	11	2.8	12	86	13	50	81	0	18	0	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135