genome.fa.s8.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  127  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45844549--45844573	2	12.5	2	100	0	50	52	0	0	48	1.00
45856292--45856322	16	1.9	16	93	0	53	51	0	0	48	1.00
45859374--45859429	22	2.7	21	81	13	62	28	3	3	64	1.27
45859403--45859466	3	22.0	3	81	12	80	32	3	0	64	1.10
45859396--45859464	14	4.3	16	81	17	81	31	2	0	65	1.08
45867012--45867065	24	2.3	23	81	12	65	24	16	0	59	1.37
45871797--45872132	89	3.8	89	79	1	271	28	21	24	26	1.99
45873883--45873934	22	2.4	21	81	9	59	26	3	7	61	1.41
45873941--45873984	21	2.0	23	86	8	65	40	2	0	56	1.11
45875995--45876036	16	2.6	16	92	0	66	42	7	2	47	1.43
45876010--45876070	22	2.8	22	84	0	77	47	1	1	49	1.21
45876805--45876841	19	1.9	19	94	0	65	62	0	0	37	0.96
45880470--45880820	156	2.3	154	87	4	501	35	16	11	37	1.84
45880470--45880827	77	4.6	78	83	3	456	34	15	11	37	1.84
45880863--45881018	84	1.9	84	87	4	235	31	12	10	46	1.75
45880852--45881041	84	2.3	83	78	5	204	37	12	8	40	1.75
45883496--45883528	12	2.6	13	85	9	50	30	3	0	66	1.06
45884275--45884310	16	2.2	16	95	0	63	55	0	2	41	1.14
45884366--45884404	15	2.7	14	84	7	51	74	0	2	23	0.94
45884918--45884969	24	2.1	24	82	7	59	32	3	5	57	1.40
45885834--45885880	24	2.0	24	83	8	60	70	2	17	10	1.26
45894500--45894528	6	4.8	6	100	0	58	86	0	0	13	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45895034--45895079	7	6.4	7	82	12	58	73	0	13	13	1.09
45896276--45896354	27	3.1	27	63	26	73	34	13	17	34	1.90
45896277--45896372	48	2.0	48	95	0	174	35	15	17	31	1.92
45896372--45897143	89	8.7	88	83	1	889	28	23	23	24	2.00
45896372--45897127	267	2.8	264	87	2	1014	28	23	23	24	2.00
45897383--45897545	50	3.3	51	72	3	161	30	21	22	25	1.98
45897328--45897590	100	2.6	100	83	4	316	31	20	20	26	1.98
45897603--45897977	44	8.6	44	73	9	200	30	20	22	27	1.98
45898471--45898501	10	3.0	10	95	4	53	29	0	0	70	0.87
45899314--45899349	2	18.5	2	94	5	65	47	0	0	52	1.00
45901247--45901578	165	2.0	166	99	0	657	39	13	6	40	1.70
45902527--45902616	42	2.1	42	81	4	101	18	30	23	27	1.98
45903229--45903270	22	2.0	21	90	9	68	42	14	16	26	1.86
45906383--45906446	17	3.5	17	79	14	58	9	3	10	76	1.12
45906383--45906432	18	2.6	19	79	17	59	12	4	8	76	1.15
45914974--45915004	11	2.8	11	100	0	62	35	9	19	35	1.85
45918799--45918865	3	22.3	3	100	0	134	32	0	0	67	0.91
45925048--45925087	21	1.9	21	84	0	53	52	5	12	30	1.60
45926146--45926214	23	2.9	24	82	10	79	33	15	27	23	1.95
45926146--45926231	25	3.5	24	82	10	77	32	16	25	25	1.96
45936381--45936449	23	2.9	24	82	10	79	33	15	27	23	1.95
45936381--45936466	25	3.5	24	82	10	77	32	16	25	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45939752--45939843	34	2.7	34	81	6	114	31	5	16	46	1.69
45940767--45940800	17	1.9	17	88	5	50	47	0	0	52	1.00
45945238--45945368	39	3.4	38	84	4	163	29	16	33	19	1.94
45945296--45945355	19	3.1	19	72	13	68	31	15	33	20	1.93
45946945--45946973	10	2.9	10	100	0	58	20	20	31	27	1.98
45947418--45947495	26	3.3	26	66	23	80	38	5	10	46	1.60
45947412--45947501	45	2.0	45	100	0	180	35	4	11	48	1.59
45949056--45949114	29	2.0	29	83	6	75	54	0	6	38	1.27
45949099--45949137	15	2.6	15	83	0	51	66	0	2	30	1.05
45949103--45949153	12	4.2	12	73	12	50	66	0	1	31	1.03
45950644--45950789	41	3.5	41	77	5	141	31	20	21	26	1.98
45950403--45950828	83	5.1	81	79	8	345	28	20	20	30	1.98
45952153--45952435	140	2.0	141	98	1	550	26	26	12	33	1.92
45968028--45968065	2	19.0	2	88	0	58	47	2	0	50	1.15
45978640--45978732	46	2.0	46	100	0	186	32	15	21	31	1.94
45980390--45980424	3	11.7	3	100	0	70	34	31	0	34	1.58
45983354--45983408	22	2.4	23	76	11	60	61	0	1	36	1.06
45983320--45983531	110	1.9	108	90	5	338	55	1	4	38	1.30
45984184--45984240	30	1.9	30	96	0	105	49	0	3	47	1.18
45984189--45984245	17	3.6	17	72	18	68	52	0	1	45	1.11
45984317--45984371	22	2.4	23	76	11	60	61	0	1	36	1.06
45984298--45984494	110	1.8	109	91	6	301	54	1	4	39	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45984298--45984494	108	1.8	108	91	6	326	54	1	4	39	1.30
45985147--45985203	30	1.9	30	96	0	105	49	0	3	47	1.18
45983335--45985261	963	2.0	963	100	0	3854	40	9	12	37	1.75
45985152--45985208	17	3.6	17	72	18	68	52	0	1	45	1.11
45985329--45985362	12	2.8	12	95	4	59	26	17	14	41	1.88
45985329--45985376	25	1.9	25	82	0	60	29	16	16	37	1.91
45985396--45985435	14	2.9	14	92	3	64	10	27	17	45	1.80
45989434--45989497	14	4.7	13	73	21	51	29	32	0	37	1.58
45990362--45990396	18	1.9	18	88	0	52	51	8	34	5	1.56
46009006--46009075	28	2.5	28	88	0	104	38	22	2	35	1.69
46009300--46009357	29	2.0	29	86	0	80	12	17	25	44	1.83
46009301--46009364	29	2.2	29	82	0	74	12	15	23	48	1.79
46009766--46009801	14	2.6	14	90	0	54	36	11	19	33	1.87
46009974--46010034	19	3.2	20	77	17	67	55	3	1	39	1.26
46013545--46013612	30	2.3	30	89	2	102	30	11	19	38	1.87
46013556--46013629	30	2.5	30	90	0	121	27	14	22	35	1.94
46016410--46016462	27	2.0	26	85	7	72	43	11	1	43	1.51
46017438--46017471	15	2.3	15	95	5	61	76	5	17	0	0.98
46031235--46031333	50	2.0	50	93	0	171	27	21	20	31	1.98
46031315--46031349	18	1.9	18	100	0	70	31	28	17	22	1.96
46036487--46036544	20	2.9	19	82	7	71	32	5	5	56	1.43
46036674--46036869	87	2.2	89	83	5	238	37	8	16	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46037654--46037705	26	2.0	26	85	7	70	3	25	1	69	1.16
46037664--46037712	16	2.9	16	81	6	53	4	26	0	69	1.06
46038369--46038563	62	3.1	63	76	2	151	22	22	27	27	1.99
46039768--46039889	23	5.3	23	87	6	167	31	24	19	24	1.98
46039768--46039889	46	2.7	46	92	0	190	31	24	19	24	1.98
46041210--46041289	42	1.9	42	92	5	135	27	25	32	15	1.95
46043739--46043789	7	7.3	7	90	0	75	54	11	13	19	1.69
46050016--46050068	25	2.1	25	89	0	79	32	11	15	41	1.82
46072022--46072066	23	1.9	24	86	4	65	37	4	4	53	1.41
46072106--46072153	15	3.0	16	77	16	55	56	2	4	37	1.30
46072181--46072233	23	2.3	23	80	6	63	71	0	26	1	0.96
46072376--46072410	16	2.2	16	90	10	54	34	0	14	51	1.42
46072975--46073008	16	2.1	16	88	0	50	41	2	20	35	1.68
46078920--46079043	20	6.2	20	82	0	131	8	31	20	38	1.84
46078942--46079037	40	2.4	40	92	0	156	8	32	20	38	1.83
46084557--46084624	31	2.2	31	97	2	129	36	5	17	39	1.74
46087248--46087285	10	3.6	11	86	6	53	81	10	7	0	0.87
46087258--46087334	23	3.3	22	86	12	109	74	11	14	0	1.08
46093911--46094230	32	10.1	32	96	2	601	31	9	12	46	1.74
46105236--46105315	37	2.1	38	88	2	126	52	6	22	18	1.68
46106619--46106667	25	2.0	25	88	8	73	46	26	10	16	1.78
46109510--46109542	15	2.2	15	94	0	57	63	9	6	21	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46136886--46136930	7	6.3	7	84	5	54	31	0	28	40	1.57
46136886--46136930	22	2.1	21	91	4	72	31	0	28	40	1.57
46137166--46137260	34	2.8	35	80	10	99	23	1	37	37	1.62
46141626--46141810	43	4.3	43	90	0	280	18	18	32	30	1.95
46142435--46142479	20	2.2	20	88	0	63	13	24	35	26	1.92
46152947--46153078	50	2.6	50	83	4	158	23	23	21	31	1.98
46152946--46153073	25	5.1	25	81	3	141	21	24	21	32	1.98
46162955--46162994	21	2.0	20	85	5	53	30	5	7	57	1.48
46163132--46163185	28	1.9	28	81	7	65	46	0	3	50	1.19
46166366--46166513	73	2.0	74	98	1	289	29	8	27	35	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135