genome.fa.s8.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  93  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35031852--35031947	31	3.1	31	93	3	165	31	9	12	46	1.73
35035534--35035774	69	3.4	68	74	7	223	30	23	25	20	1.98
35037638--35037690	20	2.7	18	80	13	61	47	0	0	52	1.00
35045749--35045874	63	2.0	63	93	0	216	31	13	24	30	1.93
35046776--35046819	20	2.2	20	95	0	79	36	15	27	20	1.93
35046776--35046831	20	2.8	20	89	2	69	33	14	26	25	1.94
35053422--35053454	18	1.9	18	88	11	52	54	12	0	33	1.37
35058908--35059384	124	3.8	124	91	1	742	23	21	24	30	1.99
35067453--35067501	25	2.0	25	95	0	89	20	10	24	44	1.82
35070391--35070447	28	2.0	28	96	0	105	29	28	5	36	1.79
35073667--35073719	18	2.9	17	81	10	61	41	3	18	35	1.69
35082206--35082231	2	13.0	2	100	0	52	50	0	0	50	1.00
35091668--35091760	27	3.4	27	87	0	132	46	18	15	20	1.84
35091714--35091796	27	3.1	27	81	10	73	36	16	19	27	1.93
35105604--35106020	225	1.9	222	89	2	656	36	16	13	32	1.88
35107398--35107445	26	1.9	25	83	8	62	31	0	8	60	1.26
35134841--35135115	132	2.1	133	97	2	525	37	8	9	45	1.66
35143051--35143219	82	2.1	81	85	3	223	19	18	21	40	1.92
35143052--35143219	27	6.2	27	86	4	221	19	18	21	40	1.92
35143848--35143894	24	1.9	25	86	4	69	25	36	0	38	1.56
35146646--35146787	50	2.8	50	84	0	185	27	21	29	21	1.98
35151585--35151635	17	3.1	17	80	2	50	47	19	5	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35163460--35163488	3	9.7	3	100	0	58	34	0	0	65	0.93
35163616--35163670	2	28.0	2	82	10	60	49	1	1	47	1.23
35163685--35163741	27	2.2	25	78	6	60	31	8	3	56	1.47
35163816--35163974	51	3.3	50	70	22	158	38	7	5	49	1.53
35163800--35163992	98	2.0	98	94	4	345	37	7	5	49	1.53
35163995--35164394	202	2.0	202	95	0	728	27	12	5	55	1.58
35164509--35164731	111	2.0	112	95	1	403	29	19	12	38	1.89
35165955--35166004	21	2.3	21	93	3	82	56	2	0	42	1.11
35170146--35170339	74	2.6	74	76	6	187	36	21	25	17	1.94
35170113--35170347	25	9.5	25	69	11	135	34	21	25	18	1.96
35171966--35172009	13	3.3	14	87	6	65	50	15	13	20	1.78
35179091--35179223	24	5.4	24	70	13	99	35	21	25	17	1.95
35179067--35179247	24	7.3	25	70	13	88	35	21	25	17	1.95
35179235--35179297	25	2.5	25	89	0	90	26	22	28	22	1.99
35181383--35181424	17	2.4	18	84	11	52	47	14	0	38	1.44
35184119--35184192	34	2.2	34	97	0	139	47	14	8	29	1.73
35185313--35185379	9	7.4	9	87	0	98	25	11	22	40	1.88
35185732--35185767	16	2.2	16	90	9	56	19	5	0	75	1.00
35188864--35188901	20	1.9	20	89	10	60	73	5	2	18	1.14
35189860--35190291	50	8.6	50	74	4	291	24	20	22	31	1.98
35189860--35190294	100	4.3	100	85	0	469	24	20	22	32	1.98
35191760--35191793	5	6.8	5	100	0	68	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35193792--35193901	42	2.6	41	80	8	116	10	11	5	71	1.28
35198757--35198796	20	2.0	20	85	0	53	52	0	10	37	1.35
35198860--35198938	3	26.3	3	81	14	92	67	0	3	29	1.08
35198877--35198984	9	11.8	9	75	14	60	66	1	5	25	1.23
35199694--35199745	20	2.7	20	85	11	65	76	1	1	19	0.97
35200905--35200979	4	19.8	4	72	22	56	72	0	28	0	0.86
35200902--35200975	10	7.4	10	74	15	55	71	0	28	0	0.86
35200905--35200980	14	5.6	14	73	16	70	72	0	27	0	0.85
35200897--35201017	43	2.9	43	78	11	126	70	0	28	0	0.99
35200903--35201017	49	2.3	47	80	14	117	71	0	26	0	0.98
35200906--35201046	39	3.5	40	77	17	143	68	0	29	0	0.99
35201995--35202038	22	2.0	22	95	0	79	29	4	34	31	1.78
35201759--35202726	286	3.4	284	93	1	1564	49	5	13	31	1.65
35204956--35204982	11	2.5	11	100	0	54	37	7	14	40	1.74
35207610--35207640	9	3.4	9	95	0	53	58	0	0	41	0.98
35207651--35207772	63	2.0	62	86	0	163	47	12	4	35	1.63
35207664--35207786	63	2.0	63	85	3	169	48	12	4	34	1.59
35207815--35207849	3	11.7	3	93	0	61	65	2	0	31	1.07
35207973--35208061	27	3.3	27	88	0	133	16	33	32	16	1.92
35226253--35226348	45	2.1	45	82	3	113	31	26	14	28	1.95
35227797--35227952	28	5.5	28	91	1	231	30	10	25	32	1.90
35227797--35227952	57	2.8	56	90	2	231	30	10	25	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35228733--35229193	23	19.7	23	73	10	337	26	14	18	40	1.89
35228701--35229164	93	5.0	93	95	0	824	26	14	18	40	1.89
35229407--35229640	50	4.8	48	81	10	237	21	31	20	26	1.98
35229449--35229631	50	3.7	49	86	5	255	19	32	21	26	1.97
35229449--35229631	97	1.9	99	87	5	273	19	32	21	26	1.97
35233079--35233115	19	1.9	19	88	0	56	62	18	2	16	1.45
35233348--35233399	20	2.7	19	85	5	61	30	0	7	61	1.24
35233355--35233399	18	2.3	20	85	7	58	35	0	6	57	1.25
35236145--35236218	29	2.6	30	77	12	84	59	0	5	35	1.20
35242443--35242470	6	4.7	6	100	0	56	0	0	50	50	1.00
35247933--35247966	15	2.2	16	89	5	52	26	2	5	64	1.30
35249606--35249705	48	2.1	48	100	0	200	38	24	22	16	1.93
35250578--35250820	120	2.0	121	97	2	463	48	10	10	30	1.71
35254505--35254548	21	2.1	21	83	8	54	63	4	4	27	1.33
35254880--35255442	298	1.9	305	81	6	707	35	14	10	39	1.81
35258488--35258581	21	4.3	21	81	8	73	37	25	21	15	1.93
35258464--35258581	42	2.7	42	78	11	123	38	24	20	16	1.93
35258464--35258591	23	5.9	22	76	12	104	37	24	19	18	1.94
35259597--35259631	16	2.2	16	89	0	52	0	34	2	62	1.10
35260812--35260867	5	11.6	5	75	21	57	57	0	0	42	0.99
35260821--35260861	20	2.0	20	90	9	64	53	0	0	46	1.00
35260817--35260881	28	2.2	30	83	8	80	58	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35266014--35266043	14	2.1	14	93	0	51	26	46	10	16	1.78
35267157--35267191	16	2.1	18	89	10	56	65	11	0	22	1.24
35267683--35267719	18	2.1	19	85	10	51	48	18	8	24	1.75
35271591--35271644	2	27.0	2	88	0	81	46	1	50	1	1.23
35273302--35273363	17	3.5	17	77	16	72	29	12	14	43	1.83
35273293--35273362	36	1.9	36	94	0	122	27	14	15	42	1.86
35280123--35280184	23	2.8	22	83	9	72	54	9	0	35	1.33
35280403--35280457	28	2.0	28	82	7	67	41	0	3	54	1.18
35283016--35283152	40	3.5	40	80	8	163	19	19	22	37	1.94
35283041--35283101	20	3.0	20	82	0	86	13	19	26	40	1.88
35282985--35283101	20	5.8	20	76	0	81	17	22	23	36	1.95
35288860--35289005	45	3.1	47	62	23	117	43	10	9	35	1.73
35288833--35289019	93	2.0	94	98	1	367	45	9	8	36	1.68
35289292--35289357	31	2.1	31	88	0	96	46	10	10	31	1.72
35289452--35289504	9	6.1	8	81	14	61	32	1	1	64	1.15
35289452--35289508	17	3.2	18	87	5	71	31	1	1	64	1.13
35291901--35291960	26	2.3	26	85	2	86	40	21	21	16	1.92
35291901--35291969	26	2.7	25	82	6	84	39	20	23	17	1.92
35293468--35293528	26	2.3	27	82	2	79	55	11	18	14	1.68
35293658--35293700	6	7.3	6	97	2	79	48	0	13	37	1.43
35295589--35295674	15	5.7	15	83	1	100	32	17	2	47	1.60
35295607--35295674	30	2.3	30	97	0	127	27	17	2	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35306707--35306761	25	2.2	25	83	6	67	23	21	16	38	1.93
35308514--35308554	20	2.0	20	95	0	73	24	7	19	48	1.74
35319487--35319645	27	5.9	27	75	7	126	23	16	19	40	1.90
35319501--35319649	54	2.8	54	80	2	156	21	17	18	42	1.89
35319501--35319649	81	1.8	81	84	5	203	21	17	18	42	1.89
35328185--35328392	40	5.2	40	79	2	195	29	22	18	29	1.97
35328185--35328365	79	2.3	80	81	0	211	28	22	18	30	1.97
35330583--35330616	17	2.0	17	100	0	68	41	0	11	47	1.40
35333337--35333362	11	2.4	11	100	0	52	34	0	7	57	1.27
35339646--35339684	18	2.2	17	86	13	53	33	0	20	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135