genome.fa.s8.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  28  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11091181--11091236	21	2.6	21	88	5	76	62	0	0	37	0.95
11091539--11091566	14	2.0	14	100	0	56	7	28	0	64	1.20
11091519--11091563	19	2.5	18	83	16	58	6	26	0	66	1.16
11094178--11094219	18	2.4	18	84	4	50	42	0	2	54	1.13
11094736--11094781	19	2.4	20	85	7	60	67	4	0	28	1.10
11095667--11095889	74	3.0	74	100	0	446	44	17	13	24	1.84
11097306--11097335	14	2.1	14	100	0	60	13	20	0	66	1.24
11101843--11102490	324	2.0	324	100	0	1296	36	6	21	35	1.79
11103014--11103094	37	2.2	37	93	2	137	28	12	23	35	1.91
11103009--11103229	87	2.5	88	88	1	338	28	14	23	33	1.94
11103101--11103184	36	2.3	37	87	2	116	23	13	28	34	1.92
11107870--11107907	15	2.5	15	84	12	51	42	0	44	13	1.43
11107900--11107947	3	16.0	3	78	8	53	60	0	37	2	1.09
11107886--11107947	18	3.3	18	79	16	63	54	0	40	4	1.22
11107903--11107942	21	1.9	21	94	0	71	60	0	37	2	1.11
11112301--11112349	21	2.3	21	78	0	62	2	30	10	57	1.43
11118377--11118670	146	2.0	147	97	2	556	40	6	8	44	1.62
11132976--11133029	27	1.9	28	88	7	83	20	44	0	35	1.52
11141838--11141964	63	2.0	63	85	0	173	29	22	16	31	1.96
11144522--11144568	24	2.0	22	88	8	67	40	0	0	59	0.97
11150498--11150754	140	1.8	140	84	5	349	43	22	9	24	1.82
11152628--11152657	2	15.0	2	100	0	60	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11160027--11160051	2	12.5	2	100	0	50	48	0	0	52	1.00
11163023--11163270	120	2.1	120	100	0	496	41	16	18	23	1.90
11165696--11165727	2	16.0	2	100	0	64	50	50	0	0	1.00
11169953--11169982	15	2.0	15	100	0	60	20	26	6	46	1.75
11186827--11186884	31	1.9	30	86	10	82	43	1	1	53	1.21
11194999--11195135	27	5.1	27	99	0	267	43	22	15	18	1.87
11202298--11202337	14	2.8	15	85	11	57	65	2	0	32	1.06
11207165--11207204	21	1.9	21	94	0	71	0	27	10	62	1.27
11222552--11222974	211	2.0	212	99	0	830	31	14	16	37	1.89
11226646--11226717	29	2.4	29	81	4	81	25	9	13	51	1.72
11229435--11229472	18	2.1	18	95	0	67	50	2	0	47	1.15
11232254--11232301	24	2.0	25	83	4	62	68	4	6	20	1.28
11233712--11233767	20	2.7	21	76	15	62	39	3	1	55	1.28
11233714--11233767	21	2.5	22	79	8	67	40	3	1	53	1.29
11234650--11234694	11	4.4	11	78	16	60	35	0	0	64	0.94
11234658--11234696	19	2.1	19	100	0	78	30	0	0	69	0.89
11234662--11234703	19	2.2	19	91	0	66	28	0	4	66	1.12
11246220--11246286	33	2.0	33	97	0	125	26	11	16	44	1.82
11253834--11253876	2	21.5	2	100	0	86	0	48	0	51	1.00
11254914--11254945	16	2.0	16	100	0	64	18	6	25	50	1.70
11277628--11277658	15	2.1	15	93	0	53	19	22	35	22	1.96
11296138--11296168	16	1.9	16	93	0	53	16	3	12	67	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11296527--11296563	13	2.8	13	87	0	56	29	10	24	35	1.89
11296929--11296972	22	2.0	21	91	4	70	40	4	13	40	1.65
11296951--11297088	44	3.1	44	100	0	276	42	6	13	37	1.71
11299565--11299617	26	2.0	26	96	0	97	24	18	20	35	1.95
11300067--11300437	16	21.6	17	67	22	108	23	13	0	62	1.33
11300131--11300180	13	3.6	13	80	15	64	18	8	0	74	1.06
11300067--11300156	28	3.6	24	72	18	78	26	11	0	62	1.29
11300135--11300225	31	3.0	30	85	9	114	19	9	0	70	1.15
11300131--11300232	15	6.9	14	76	17	82	18	10	0	70	1.15
11300220--11300459	5	44.0	5	68	22	71	23	15	0	60	1.38
11300221--11300302	28	2.9	28	85	8	121	25	19	1	53	1.52
11300279--11300313	12	2.9	12	91	0	61	22	22	0	54	1.45
11300305--11300419	35	3.3	36	78	14	125	19	13	0	66	1.24
11300292--11300457	68	2.4	72	75	13	175	22	13	0	63	1.29
11300316--11300443	21	6.8	20	69	22	82	22	12	0	64	1.27
11300410--11300462	17	3.1	17	83	8	63	30	13	0	56	1.37
11300220--11300457	28	8.5	28	68	18	77	23	15	0	60	1.37
11300434--11300536	33	3.0	35	76	10	113	28	11	0	59	1.39
11300507--11300561	25	2.2	25	90	6	85	38	7	1	52	1.40
11302367--11302413	5	9.0	5	81	9	58	25	19	0	55	1.43
11302405--11302598	101	1.9	101	89	8	304	35	11	0	52	1.42
11305505--11305529	11	2.3	11	100	0	50	76	16	8	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11309551--11309610	19	3.1	18	80	9	57	46	3	0	50	1.18
11310344--11310369	6	4.3	6	100	0	52	38	0	0	61	0.96
11314358--11314417	30	2.0	31	96	3	113	45	3	10	41	1.54
11323202--11323251	22	2.2	23	85	3	66	50	2	4	44	1.32
11323227--11323266	16	2.5	16	91	0	62	47	2	7	42	1.45
11323321--11323601	35	7.6	35	66	14	134	39	6	9	44	1.62
11323261--11323612	112	3.1	112	95	0	616	40	7	8	44	1.62
11323353--11323513	37	4.3	38	68	12	118	40	6	8	44	1.60
11323740--11323771	15	2.1	15	94	0	55	21	0	25	53	1.46
11323683--11323930	68	3.5	68	75	17	248	21	0	34	42	1.59
11323764--11323792	6	4.8	6	100	0	58	17	0	48	34	1.47
11323778--11323860	21	3.6	25	79	19	83	24	0	34	40	1.55
11323784--11323855	21	3.4	21	88	7	110	25	0	33	41	1.55
11323794--11323858	21	3.1	21	95	0	112	23	0	30	46	1.53
11323892--11323947	15	3.9	15	73	21	66	25	0	32	42	1.55
11333877--11333926	21	2.4	21	89	0	73	32	32	8	28	1.86
11334044--11334109	29	2.3	29	81	0	78	42	12	6	39	1.67
11335081--11335107	13	2.1	13	100	0	54	55	7	0	37	1.28
11338995--11339026	2	16.0	2	93	0	55	50	3	0	46	1.17
11342109--11342140	16	2.1	16	94	5	57	59	0	0	40	0.97
11342101--11342154	24	2.1	26	86	10	76	57	0	0	42	0.98
11342112--11342170	28	2.1	28	84	6	75	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11342297--11342339	22	2.0	22	86	9	61	41	0	2	55	1.12
11342365--11342400	17	2.1	18	89	5	56	75	5	13	5	1.17
11346900--11346938	18	2.2	17	86	13	53	46	20	0	33	1.51
11358495--11358579	28	3.2	28	62	16	72	31	22	7	38	1.81
11358484--11358586	51	2.0	51	98	0	197	27	20	7	44	1.78
11361104--11361130	11	2.5	11	100	0	54	59	0	18	22	1.38
11366810--11367065	128	2.0	128	100	0	512	32	13	16	38	1.87
11368930--11369046	62	1.9	62	85	3	164	37	19	13	29	1.90
11369404--11369454	19	2.9	18	86	13	72	62	0	3	33	1.13
11369404--11369458	17	3.3	16	80	16	67	60	0	3	36	1.15
11369490--11369634	75	1.9	78	87	4	215	41	5	2	50	1.40
11369765--11369818	22	2.5	22	76	8	58	59	0	0	40	0.98
11371415--11371454	21	1.9	21	89	0	62	55	0	2	42	1.13
11373835--11374228	87	4.6	87	76	11	375	27	25	15	31	1.96
11373984--11374125	75	1.9	75	85	0	194	26	24	16	31	1.97
11374978--11375062	39	2.2	39	87	4	127	14	20	21	44	1.86
11375587--11376023	213	2.0	213	94	0	766	23	27	15	33	1.95
11385438--11385486	24	2.0	24	96	0	89	12	32	20	34	1.90
11385723--11385769	18	2.6	18	86	0	67	29	34	8	27	1.87
11397478--11397536	17	3.4	17	72	4	64	69	1	3	25	1.13
11397474--11397561	35	2.5	35	96	0	158	68	3	2	26	1.17
11397495--11397551	18	3.2	18	75	5	71	68	3	1	26	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11397495--11397550	17	3.2	17	71	14	60	67	3	1	26	1.16
11422702--11422732	6	5.3	6	96	3	55	0	12	0	87	0.55
11431187--11431232	23	2.0	23	82	4	56	41	2	0	56	1.11
11451213--11451242	2	15.0	2	100	0	60	50	0	0	50	1.00
11451037--11451499	231	2.0	231	99	0	908	30	19	13	36	1.90
11451444--11451473	2	15.0	2	100	0	60	50	0	0	50	1.00
11457537--11457597	27	2.2	27	80	11	70	57	1	0	40	1.08
11457567--11457613	21	2.4	19	82	10	58	57	6	0	36	1.24
11458393--11458623	9	23.9	9	66	18	58	32	1	6	60	1.29
11458423--11458507	31	2.9	29	75	13	84	34	0	8	57	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135