Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  44  of  135  ( 16172 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17347366--17347391
13
2.0
13
100
0
52
38
7
23
30
1.83
17347407--17347488
39
2.1
39
86
4
112
23
4
3
68
1.25
17347398--17347517
10
12.5
10
71
9
72
26
3
2
67
1.19
17347417--17347516
39
2.5
39
80
7
105
28
4
2
66
1.21
17347399--17347519
9
12.8
9
73
12
73
27
3
2
66
1.19
17347493--17347542
9
5.8
9
79
9
50
34
0
2
64
1.05
17347494--17347544
17
3.0
16
73
21
50
31
0
1
66
1.03
17347693--17347879
91
2.1
90
78
5
198
43
9
8
38
1.67
17351770--17351794
6
4.2
6
100
0
50
84
0
0
16
0.63
17352303--17352421
46
2.6
45
89
2
193
58
10
1
29
1.40
17364318--17364367
23
2.2
22
86
13
75
46
14
6
34
1.69
17371178--17371208
2
15.5
2
93
0
53
48
0
3
48
1.17
17387703--17387733
6
5.2
6
100
0
62
48
51
0
0
1.00
17388988--17389020
3
11.0
3
100
0
66
66
0
33
0
0.92
17390939--17390971
12
2.8
12
86
4
50
69
0
0
30
0.88
17393831--17393868
13
2.8
13
82
17
51
68
0
0
31
0.90
17395375--17395560
92
2.0
91
94
3
329
45
7
7
39
1.61
17400894--17400943
19
2.6
20
71
6
50
62
8
22
8
1.49
17403879--17404019
50
2.8
50
83
4
185
30
27
18
23
1.98
17404176--17404223
16
3.0
16
90
0
69
39
12
6
41
1.68
17405156--17405201
2
24.0
2
86
8
60
45
2
0
52
1.13
17411531--17411591
26
2.3
26
77
0
68
16
18
26
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17411618--17411683
25
2.7
25
79
6
64
19
28
19
31
1.97
17417496--17417524
14
2.1
14
93
6
51
65
0
0
34
0.93
17422084--17422148
29
2.2
29
91
0
112
41
16
7
33
1.77
17430157--17430500
175
2.0
175
100
0
688
37
21
15
25
1.92
17430866--17430995
64
2.0
64
96
0
242
37
18
11
32
1.87
17435600--17435642
22
1.9
22
85
4
59
55
0
6
37
1.27
17437030--17437072
12
3.5
12
78
6
50
69
4
2
23
1.18
17437175--17437243
22
3.2
21
70
13
61
31
1
2
63
1.18
17437191--17437215
13
1.9
13
100
0
50
24
0
4
72
1.02
17472443--17472486
18
2.5
17
78
7
52
45
4
6
43
1.51
17472567--17472693
38
3.3
39
72
4
141
42
7
8
41
1.63
17472525--17472716
76
2.5
76
99
0
375
45
5
8
40
1.58
17472717--17473989
29
43.6
29
83
8
1478
28
3
27
41
1.71
17473205--17473351
71
2.1
70
91
3
242
25
3
31
38
1.73
17473238--17473323
42
2.0
42
97
0
163
25
3
32
38
1.73
17473972--17474011
7
5.6
7
82
5
53
12
0
40
47
1.41
17474377--17474411
18
1.9
18
94
0
61
34
8
31
25
1.86
17476083--17476125
18
2.4
18
92
3
70
60
0
0
39
0.97
17476339--17476422
29
3.1
29
69
22
92
42
0
26
30
1.55
17476349--17476456
22
4.6
22
72
20
78
40
0
30
28
1.57
17476312--17476433
51
2.4
51
94
0
217
44
0
26
28
1.60
17476411--17476452
21
2.0
22
90
4
68
45
0
35
19
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17476411--17476452
10
3.8
11
87
9
59
45
0
35
19
1.50
17486953--17487027
25
2.8
25
82
11
78
45
10
21
22
1.82
17490851--17491325
236
2.0
236
96
0
871
42
14
16
26
1.86
17495090--17495265
19
9.2
19
67
9
83
61
6
0
30
1.26
17495090--17495265
10
18.4
9
68
15
68
61
6
0
30
1.26
17501808--17501834
13
2.1
13
100
0
54
37
0
22
40
1.54
17509789--17509830
21
2.0
21
86
9
59
16
38
0
45
1.48
17511343--17511367
6
4.2
6
100
0
50
52
32
0
16
1.44
17513426--17513459
3
11.3
3
100
0
68
35
0
32
32
1.58
17545111--17545161
27
1.9
26
84
11
68
60
1
3
33
1.26
17545484--17545566
28
2.9
27
75
21
71
65
4
4
25
1.33
17545660--17545699
20
2.0
20
90
9
64
65
0
10
25
1.24
17545663--17545709
21
2.2
21
77
7
51
72
0
10
17
1.12
17549289--17549423
40
3.4
39
76
7
139
31
24
17
25
1.97
17549289--17549424
41
3.5
40
75
7
134
32
24
17
25
1.97
17549930--17549965
18
1.9
19
88
5
56
33
27
0
38
1.57
17550247--17550308
11
5.8
10
73
19
54
1
19
4
74
1.09
17550322--17550355
15
2.1
17
89
10
54
47
0
0
52
1.00
17550325--17550379
13
4.2
13
80
15
60
47
1
0
50
1.11
17550334--17550387
28
2.0
27
85
7
74
48
3
0
48
1.19
17550581--17550616
13
2.8
13
95
0
63
50
0
0
50
1.00
17551903--17552177
135
2.0
135
95
0
496
28
6
21
44
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17555199--17555245
25
1.9
24
91
4
76
25
25
12
36
1.92
17559778--17559816
21
1.9
20
85
15
53
15
7
5
71
1.26
17576059--17576087
14
2.0
15
93
6
51
34
0
0
65
0.93
17577295--17577509
85
2.5
87
74
10
208
42
14
8
33
1.76
17577682--17577726
19
2.3
20
80
3
56
66
2
2
28
1.15
17577719--17577810
18
4.7
19
73
15
73
67
2
2
28
1.14
17577719--17577810
10
9.6
10
70
17
54
67
2
2
28
1.14
17577740--17577811
29
2.5
28
80
6
90
66
2
1
29
1.14
17577740--17577810
20
3.7
20
74
10
67
67
2
1
28
1.13
17580910--17581044
49
2.8
49
93
0
216
25
26
20
28
1.99
17581067--17581195
50
2.4
53
79
11
140
25
27
17
28
1.98
17583320--17583373
21
2.6
20
78
16
56
38
1
3
55
1.28
17596903--17597002
51
2.0
51
86
4
139
45
3
26
26
1.68
17596961--17597038
11
7.0
11
75
18
65
44
1
29
24
1.62
17596961--17597038
22
3.5
22
80
16
90
44
1
29
24
1.62
17596961--17597037
33
2.3
35
84
8
106
44
1
29
24
1.62
17602931--17602986
20
2.5
22
75
16
53
32
1
3
62
1.23
17609631--17609702
27
2.7
27
93
0
117
52
12
0
34
1.39
17609750--17609836
22
3.7
22
89
10
129
32
0
13
54
1.40
17609755--17609883
47
2.7
48
83
10
165
31
0
13
53
1.46
17609932--17609969
19
2.0
19
89
0
58
36
5
7
50
1.54
17610183--17610254
27
2.7
27
97
0
135
20
38
22
18
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17610298--17610353
28
2.0
29
82
3
69
48
3
1
46
1.30
17610389--17610462
28
2.6
29
72
18
66
32
14
6
45
1.71
17619511--17619547
18
2.1
17
90
5
56
40
0
0
59
0.97
17619521--17619560
12
3.0
14
82
17
50
42
0
0
57
0.98
17619875--17619970
28
3.5
28
94
1
167
37
9
0
53
1.34
17625769--17625855
44
2.0
44
97
0
165
45
16
3
34
1.64
17632246--17632284
18
2.1
18
85
4
51
64
12
0
23
1.28
17634490--17634534
17
2.6
17
96
3
81
31
0
11
57
1.33
17634490--17634534
8
5.1
9
86
13
67
31
0
11
57
1.33
17638285--17638312
2
14.0
2
100
0
56
50
50
0
0
1.00
17642848--17642970
61
2.0
60
81
10
144
24
8
22
44
1.80
17643369--17643402
17
2.0
17
88
0
50
5
29
17
47
1.71
17648131--17648189
31
2.0
30
83
6
75
37
13
13
35
1.84
17649409--17649477
29
2.3
30
85
5
86
34
2
11
50
1.54
17649954--17650006
25
2.1
25
82
6
63
30
7
1
60
1.35
17650159--17650202
21
2.1
21
95
0
79
22
6
36
34
1.81
17651336--17651366
16
1.9
16
93
0
53
41
25
19
12
1.87
17675913--17675941
6
4.8
6
100
0
58
17
0
48
34
1.47
17680755--17680779
6
4.2
6
100
0
50
36
0
0
64
0.94
17688377--17688413
17
2.2
16
90
4
56
32
0
2
64
1.07
17697110--17697205
47
2.0
47
89
0
147
52
11
9
27
1.68
17698396--17698435
7
5.7
7
100
0
80
87
0
0
12
0.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17702655--17702683
2
14.5
2
100
0
58
0
51
0
48
1.00
17718069--17718099
16
1.9
16
100
0
62
25
12
16
45
1.83
17719959--17720022
30
2.1
30
88
0
92
45
14
1
39
1.54
17720965--17721100
71
1.9
70
90
1
218
30
19
17
33
1.95
17738088--17738156
16
4.4
16
78
10
54
53
1
2
42
1.24
17738735--17738775
18
2.3
18
84
12
50
36
4
2
56
1.34
17739755--17739900
58
2.5
60
81
9
174
50
13
6
29
1.66
17741886--17741918
14
2.4
14
90
10
50
48
9
0
42
1.35
17744915--17745051
69
2.0
70
98
1
267
29
19
18
31
1.96
17756388--17756432
19
2.4
17
82
17
54
31
0
4
64
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135