genome.fa.s8.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  114  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41927855--41928518	113	5.9	113	93	0	1096	26	19	27	26	1.99
41928418--41928649	73	3.2	73	87	3	324	25	20	26	27	1.99
41928997--41929040	17	2.7	17	89	6	65	29	0	27	43	1.55
41929327--41929364	14	2.7	15	88	12	62	26	0	31	42	1.56
41929443--41929486	19	2.4	18	81	7	52	75	2	4	18	1.09
41929481--41929581	47	2.2	46	90	3	157	48	7	0	43	1.32
41934980--41935183	43	4.7	43	80	4	205	24	18	28	27	1.98
41945505--41945762	135	1.9	136	98	1	500	33	14	4	47	1.64
41963924--41963971	22	2.2	23	85	7	64	66	12	6	14	1.42
41964671--41964737	3	22.3	3	77	11	66	28	2	1	67	1.14
41965396--41965800	108	3.7	109	93	2	688	31	15	19	33	1.93
41972636--41972756	52	2.3	52	86	6	158	28	28	14	28	1.95
41974787--41974844	3	19.3	3	100	0	116	32	0	0	67	0.91
41975615--41975672	3	19.3	3	100	0	116	32	0	0	67	0.91
41974117--41975772	828	2.0	828	100	0	3312	35	8	9	45	1.68
41981565--41981653	41	2.2	41	82	9	103	21	21	26	30	1.98
41986009--41986047	19	2.1	19	100	0	78	48	15	15	20	1.81
41986114--41986166	26	2.0	26	100	0	106	32	7	7	52	1.58
41989454--41989629	91	1.9	91	95	0	316	32	23	12	31	1.92
41999830--41999854	6	4.2	6	100	0	50	16	0	0	84	0.63
42004118--42004273	45	3.5	45	66	11	131	42	2	5	49	1.38
42004135--42004318	89	2.1	90	98	1	361	41	3	5	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42005358--42005395	20	1.9	20	94	0	67	15	28	13	42	1.85
42013884--42013922	20	2.0	20	94	0	69	48	2	0	48	1.15
42014471--42014689	108	2.0	108	83	6	275	34	14	15	35	1.88
42018167--42018310	78	1.8	78	95	0	261	43	27	5	23	1.76
42021274--42021302	2	14.5	2	100	0	58	51	0	0	48	1.00
42021515--42021554	21	1.9	21	94	0	71	35	25	7	32	1.84
42022480--42022664	91	2.0	91	94	0	325	44	9	8	37	1.68
42025416--42025580	43	3.9	42	78	7	154	28	15	26	29	1.96
42027768--42027807	21	1.9	21	89	0	62	35	27	7	30	1.84
42032814--42032838	2	12.5	2	100	0	50	48	0	0	52	1.00
42034949--42035003	18	3.1	18	75	17	60	50	0	1	47	1.11
42038780--42038866	40	2.1	41	91	6	142	31	3	0	65	1.09
42040303--42040367	32	2.0	32	96	0	121	55	12	10	21	1.67
42041197--42041250	15	3.6	15	80	7	56	48	0	51	0	1.00
42041235--42041294	27	2.2	26	83	13	77	63	0	36	0	0.95
42041261--42041300	16	2.4	16	87	4	62	67	0	32	0	0.91
42041315--42041361	20	2.3	20	82	7	60	72	2	25	0	0.96
42041261--42041347	16	5.1	16	69	17	50	64	1	34	0	1.01
42045126--42045155	13	2.3	13	100	0	60	60	0	0	40	0.97
42046948--42047048	52	1.9	52	90	4	159	34	3	2	58	1.32
42048300--42048324	13	1.9	13	100	0	50	56	4	0	40	1.18
42050346--42050492	30	4.6	30	75	18	127	65	0	34	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42050367--42050496	18	6.9	18	68	18	70	66	0	33	0	0.92
42050360--42050548	36	5.1	36	74	21	158	67	0	32	0	0.91
42050347--42050494	5	31.0	5	71	18	70	66	0	33	0	0.92
42050347--42050553	75	2.8	74	85	11	259	66	0	33	0	0.92
42050832--42050890	27	2.2	27	87	0	82	30	28	25	15	1.96
42050957--42050987	9	3.4	9	100	0	62	77	0	22	0	0.77
42050998--42051037	11	3.7	11	86	6	64	72	0	25	2	0.97
42051061--42051099	19	2.0	21	85	10	55	23	0	7	69	1.14
42054587--42055083	101	4.9	104	79	12	468	35	14	16	32	1.90
42054637--42055049	201	2.0	204	85	9	561	35	14	15	34	1.88
42054771--42055083	107	3.0	105	82	9	334	36	14	15	33	1.88
42057941--42058253	104	3.0	105	87	5	442	30	15	14	39	1.88
42062384--42062418	18	1.9	18	100	0	70	11	51	5	31	1.61
42063281--42063339	3	19.7	3	92	0	100	66	30	1	1	1.12
42063405--42063443	20	2.0	21	85	10	55	66	10	0	23	1.22
42063567--42063694	27	4.7	27	90	3	179	17	28	29	25	1.97
42064113--42064320	104	2.0	104	98	0	398	33	8	19	38	1.83
42065392--42065438	16	2.7	17	84	12	60	25	0	12	61	1.31
42066506--42066552	19	2.7	17	84	12	60	63	10	0	25	1.26
42066511--42066544	13	2.6	13	90	0	50	64	11	0	23	1.26
42068047--42068175	45	2.8	44	81	7	123	23	22	24	29	1.99
42072967--42073034	33	2.1	33	88	0	100	26	42	14	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42075394--42075469	31	2.5	31	82	4	100	64	2	5	27	1.28
42077690--42077746	21	2.7	21	75	2	60	28	10	0	61	1.29
42078155--42078198	21	2.0	22	91	4	72	13	9	6	70	1.33
42079459--42079495	14	2.7	14	84	16	51	29	2	0	67	1.04
42079698--42079741	21	2.0	22	91	4	72	13	9	6	70	1.33
42094017--42094070	27	2.0	27	85	0	72	42	1	9	46	1.46
42112362--42112466	40	2.5	41	75	14	99	30	3	12	53	1.56
42117758--42117787	10	2.9	10	95	5	51	60	0	0	40	0.97
42118755--42119017	10	26.0	10	65	17	62	1	30	0	68	0.97
42118785--42119014	24	10.7	23	71	19	135	1	30	0	68	0.97
42118787--42119015	44	5.3	44	83	10	301	1	29	0	68	0.97
42118824--42119001	38	4.4	36	75	19	122	1	30	0	67	0.97
42118782--42119014	82	2.8	82	89	5	337	1	30	0	68	0.97
42127919--42128122	101	2.0	102	99	0	401	36	17	11	34	1.87
42131483--42131534	24	2.2	24	85	0	68	55	5	3	34	1.42
42137635--42137807	42	4.0	42	87	2	211	30	17	18	34	1.94
42137636--42137801	21	7.8	21	72	11	113	28	18	18	34	1.95
42138430--42138525	39	2.5	39	80	6	108	20	23	28	27	1.99
42140661--42140693	5	6.6	5	92	0	57	18	3	0	78	0.87
42140745--42140783	20	2.0	20	95	5	71	41	5	2	51	1.38
42140788--42140858	13	5.1	14	69	20	51	53	5	0	40	1.24
42146188--42146221	12	2.8	12	86	0	50	5	20	44	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42145957--42146607	341	1.9	341	83	4	857	27	15	25	31	1.96
42149504--42149552	16	3.3	15	82	5	55	42	4	14	38	1.64
42149347--42149693	169	2.1	169	81	4	411	33	11	21	33	1.90
42149686--42149717	3	10.7	3	100	0	64	65	0	0	34	0.93
42151765--42151796	16	2.1	16	94	5	57	15	43	15	25	1.86
42152716--42153057	3	113.7	3	72	8	230	31	6	3	58	1.39
42157847--42158381	44	11.8	44	76	8	432	31	18	22	27	1.97
42157851--42158337	89	5.4	89	80	6	493	31	17	23	27	1.97
42157847--42158192	133	2.6	133	81	2	399	30	19	24	26	1.98
42159820--42160051	3	77.0	3	70	10	143	31	6	3	58	1.43
42163492--42163549	24	2.4	24	94	0	98	37	3	6	51	1.46
42165372--42165410	12	3.2	12	81	3	51	51	10	17	20	1.74
42167185--42167236	24	2.2	24	89	0	77	34	3	9	51	1.53
42169627--42169656	16	1.9	16	93	6	53	23	6	13	56	1.60
42175533--42175557	8	3.1	8	100	0	50	76	0	0	24	0.80
42178378--42178421	19	2.4	18	81	7	52	45	0	0	54	0.99
42179816--42179957	43	3.3	43	97	0	266	28	34	19	17	1.94
42180158--42180217	18	3.4	18	64	13	52	40	10	6	43	1.64
42184481--42184765	41	7.0	41	88	0	417	31	30	19	18	1.96
42184797--42184931	40	3.4	39	77	7	130	18	20	22	38	1.93
42186254--42186340	44	2.0	44	81	4	104	33	17	8	41	1.78
42186731--42186789	28	2.1	28	100	0	118	22	20	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42190530--42190559	2	15.0	2	100	0	60	50	0	0	50	1.00
42191534--42191574	14	2.7	15	82	17	50	51	2	7	39	1.43
42192654--42192796	42	3.4	42	83	5	173	29	11	37	22	1.89
42192768--42192892	42	3.0	42	66	12	103	28	9	39	23	1.86
42192920--42193023	42	2.5	42	90	0	163	29	10	34	25	1.89
42193562--42193636	29	2.6	29	81	10	91	48	6	0	45	1.29
42194146--42194903	85	9.0	85	99	0	1495	28	8	11	51	1.66
42195340--42195377	17	2.2	18	85	4	51	18	0	5	76	0.97
42196671--42197409	108	6.9	107	90	5	1086	39	14	15	29	1.88
42201406--42202749	109	12.4	107	84	8	1567	30	16	14	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135