genome.fa.s8.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  97  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36194672--36194710	13	3.0	13	88	0	60	69	0	15	15	1.20
36195821--36195925	44	2.5	42	80	7	106	31	19	20	28	1.97
36195948--36196329	44	8.6	46	68	13	181	29	19	23	27	1.98
36195904--36196196	134	2.2	134	88	3	455	27	20	23	27	1.99
36196081--36196440	175	2.1	175	91	2	598	28	19	23	28	1.98
36197418--36197521	43	2.4	44	81	1	120	32	21	22	24	1.98
36199070--36199144	3	24.7	3	91	2	123	32	1	1	65	1.09
36199428--36199467	17	2.4	17	82	0	53	40	0	2	57	1.12
36200242--36200309	33	2.1	33	88	5	102	10	17	19	52	1.72
36208692--36208911	51	4.3	51	92	1	359	34	15	22	28	1.94
36208692--36208911	103	2.1	102	92	0	359	34	15	22	28	1.94
36210645--36210683	14	2.8	14	84	0	51	69	12	2	15	1.30
36213668--36213710	22	2.0	22	90	0	68	25	34	9	30	1.87
36214744--36214791	21	2.3	21	82	3	62	33	0	10	56	1.34
36218569--36218680	58	1.9	58	85	3	154	42	12	9	34	1.76
36220267--36220313	20	2.2	22	85	7	62	70	8	2	19	1.24
36221762--36221834	35	2.1	35	94	0	128	36	21	19	21	1.95
36221881--36221969	45	1.9	47	84	4	119	38	15	22	23	1.93
36222068--36222441	171	2.2	171	97	1	700	33	24	23	18	1.97
36224224--36224280	29	2.0	28	83	10	71	38	0	12	49	1.41
36252030--36252093	30	2.2	29	83	8	76	25	6	14	54	1.62
36256898--36256953	20	2.8	19	78	7	67	30	17	32	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36256853--36256953	40	2.5	40	80	3	96	34	15	25	23	1.95
36256898--36256976	40	2.0	40	87	0	113	32	17	29	20	1.95
36262714--36262738	2	12.5	2	100	0	50	48	0	0	52	1.00
36270968--36271007	9	4.2	9	84	12	53	77	2	0	20	0.88
36270969--36271009	11	3.9	11	78	12	50	78	2	0	19	0.87
36271057--36271126	27	2.6	27	76	0	77	20	32	32	14	1.92
36271130--36271437	169	1.8	169	98	1	600	24	11	9	54	1.65
36271928--36271982	21	2.7	20	91	8	92	23	9	38	29	1.85
36277897--36277930	16	2.1	16	88	0	50	8	0	23	67	1.18
36279374--36279446	27	2.8	25	80	12	92	15	34	31	19	1.92
36282244--36282865	310	2.0	311	99	0	1228	43	7	10	38	1.67
36283551--36283592	17	2.4	18	80	11	52	23	4	4	66	1.30
36286803--36286947	62	2.4	59	78	13	143	32	17	10	39	1.84
36293527--36293586	25	2.3	26	83	8	70	60	1	5	33	1.29
36295191--36295553	50	7.2	49	71	4	219	21	25	23	30	1.99
36295219--36295579	100	3.6	100	95	0	625	21	24	24	28	1.99
36295592--36296715	132	8.6	132	87	4	1422	30	23	18	27	1.97
36295654--36295843	44	4.3	44	67	19	144	30	21	20	27	1.98
36295592--36296675	386	2.8	388	84	6	1386	30	23	18	28	1.97
36296374--36296558	44	4.2	44	64	14	103	31	22	16	29	1.96
36295592--36296715	395	2.9	394	84	5	1476	30	23	18	27	1.97
36297997--36298048	15	3.6	15	78	17	56	13	17	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36297999--36298048	7	7.0	7	79	20	59	14	16	0	70	1.18
36298933--36298977	15	2.8	17	78	15	51	15	15	2	66	1.35
36299468--36299501	6	5.5	6	86	6	50	0	17	0	82	0.67
36299473--36299501	9	3.0	10	90	10	51	0	17	0	82	0.66
36314666--36314695	15	2.1	14	93	6	51	30	6	10	53	1.60
36314864--36314901	19	2.1	19	90	9	62	42	0	5	52	1.24
36314928--36314966	20	2.0	19	90	5	60	28	2	5	64	1.28
36314924--36314966	19	2.1	21	87	12	63	30	2	4	62	1.28
36315069--36315129	29	2.0	29	84	6	77	36	6	27	29	1.82
36315321--36315427	53	2.0	54	85	1	144	42	5	5	46	1.50
36320537--36320651	42	2.7	43	78	2	124	33	22	23	20	1.98
36320748--36320791	22	2.0	22	81	0	52	47	25	15	11	1.79
36321722--36321751	15	1.9	16	93	6	53	20	0	6	73	1.05
36331236--36331262	7	3.9	7	100	0	54	85	0	0	14	0.61
36338422--36338469	22	2.2	21	77	3	51	77	0	12	10	1.00
36339792--36339850	17	3.7	14	77	22	55	54	13	0	32	1.40
36343946--36343989	17	2.5	17	85	7	52	56	11	0	31	1.35
36345972--36346022	23	2.2	23	89	6	77	29	9	19	41	1.84
36347943--36348008	25	2.7	24	81	4	78	37	15	24	22	1.92
36350285--36350546	43	6.1	44	84	6	270	29	29	18	21	1.97
36350285--36350546	85	3.1	85	80	5	296	29	29	18	21	1.97
36350499--36350642	74	1.9	74	91	5	238	43	21	8	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36355157--36355323	35	4.8	33	70	11	93	40	41	0	17	1.54
36355157--36355435	7	39.9	7	68	14	76	41	39	1	18	1.58
36355261--36355330	22	3.3	22	80	7	65	41	37	1	20	1.61
36355444--36355718	153	1.8	152	90	0	442	30	25	19	24	1.98
36355543--36355654	40	2.8	41	83	2	136	33	30	16	20	1.94
36355710--36355822	40	2.9	38	79	9	120	19	23	20	37	1.95
36361243--36361303	23	2.5	23	81	7	68	63	6	9	19	1.46
36362686--36362900	111	1.9	111	100	0	430	30	17	20	30	1.96
36363301--36363343	22	2.0	22	86	4	61	48	37	0	13	1.43
36368650--36368691	21	2.0	21	100	0	84	52	4	4	38	1.44
36376656--36376684	6	4.8	6	100	0	58	17	48	0	34	1.47
36380771--36380817	25	2.0	23	87	8	67	42	4	4	48	1.42
36380921--36380954	14	2.4	14	90	9	52	29	0	0	70	0.87
36381375--36381428	28	1.9	28	85	7	74	44	16	11	27	1.82
36381676--36381710	17	2.1	17	88	0	52	28	0	2	68	1.04
36381987--36382088	10	9.9	10	74	16	66	29	7	0	62	1.23
36381987--36382036	12	4.5	11	83	11	66	26	8	0	66	1.19
36381987--36382050	21	2.9	22	82	11	69	28	7	0	64	1.21
36381987--36382068	12	6.6	12	70	20	53	29	6	0	64	1.17
36383304--36383368	25	2.6	25	85	9	96	60	4	0	35	1.18
36384298--36384448	59	2.6	59	85	0	212	25	17	14	43	1.87
36385307--36385510	100	2.0	101	99	0	401	51	1	7	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36385343--36385500	53	3.1	53	60	20	127	50	2	8	38	1.46
36385812--36385861	15	3.5	14	84	10	57	16	36	0	48	1.46
36385816--36385858	14	2.9	14	86	6	50	13	39	0	46	1.44
36414448--36414494	23	2.0	23	84	8	60	55	0	4	40	1.19
36415889--36416821	465	2.0	466	99	0	1859	35	14	12	37	1.84
36418251--36418293	22	2.0	22	86	4	61	39	2	2	55	1.25
36419905--36419974	33	2.2	31	82	5	77	62	4	1	31	1.23
36420876--36420910	18	1.9	18	94	0	61	20	0	40	40	1.52
36422454--36422505	26	2.0	25	88	3	77	65	1	0	32	1.04
36427089--36427261	90	1.9	90	85	2	238	36	10	15	38	1.81
36427470--36427512	18	2.4	18	81	11	54	65	0	2	32	1.06
36427471--36427519	16	3.0	16	80	19	57	61	0	2	36	1.08
36429943--36429988	21	2.2	21	84	7	58	52	2	0	45	1.13
36429955--36430030	29	2.6	27	76	13	80	51	3	2	42	1.34
36430138--36430641	253	2.0	253	98	0	981	31	19	11	37	1.88
36434902--36434926	12	2.1	12	100	0	50	56	0	0	44	0.99
36436094--36436138	20	2.4	19	89	10	67	71	0	0	28	0.87
36436125--36436166	22	1.9	22	85	0	57	66	2	2	28	1.16
36440747--36440854	30	3.6	30	78	5	112	30	25	2	40	1.70
36441335--36441375	4	10.5	4	80	15	50	75	2	21	0	0.92
36441334--36441392	19	3.2	19	84	11	70	74	3	22	0	0.96
36441477--36441535	20	3.0	20	80	9	68	71	13	15	0	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36441486--36441540	17	3.1	18	78	17	60	70	12	16	0	1.16
36442183--36442296	17	6.4	17	72	13	77	39	11	11	37	1.77
36442236--36442297	18	3.4	18	84	8	90	35	12	8	43	1.73
36442230--36442314	19	4.5	19	78	12	86	35	11	7	45	1.68
36442217--36442295	36	2.2	35	80	8	86	40	12	10	36	1.77
36442228--36442348	36	3.4	36	82	8	140	37	10	7	44	1.67
36442236--36442305	17	3.9	17	83	9	86	31	12	8	47	1.72
36442248--36442346	18	5.6	17	69	15	67	36	10	8	45	1.68
36442417--36442532	53	2.2	54	83	11	143	32	17	9	40	1.82
36442366--36442617	18	14.2	18	71	16	145	28	15	9	45	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135