genome.fa.s8.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  98  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36445419--36445466	24	2.0	24	100	0	96	41	4	8	45	1.53
36447652--36447696	18	2.5	18	85	7	56	26	11	0	62	1.29
36450963--36451001	21	1.9	21	85	15	55	66	2	2	28	1.18
36450995--36451027	16	2.0	17	88	5	50	63	0	0	36	0.95
36452703--36452751	20	2.5	19	80	9	53	42	2	2	53	1.24
36459841--36459871	3	10.3	3	92	0	53	61	0	3	35	1.12
36460543--36460613	21	3.5	21	69	18	60	32	1	4	61	1.23
36460530--36460609	41	2.0	39	80	4	88	37	1	3	57	1.25
36460743--36460772	14	2.1	14	100	0	60	46	13	6	33	1.69
36464095--36464146	21	2.5	21	87	0	77	25	7	36	30	1.84
36467579--36467619	21	1.9	22	90	5	66	65	14	7	12	1.45
36473487--36473561	38	1.9	39	84	7	100	21	0	22	56	1.43
36478085--36478114	15	2.0	15	93	0	51	33	30	3	33	1.74
36479529--36479632	49	2.1	49	92	0	172	30	6	11	50	1.64
36481090--36481182	44	2.1	44	84	6	116	37	23	4	34	1.75
36483833--36483882	18	2.8	18	78	0	55	18	48	22	12	1.80
36485033--36485085	24	2.2	25	89	3	81	47	1	30	20	1.61
36490498--36490571	29	2.5	29	77	4	76	28	14	10	45	1.79
36497956--36497995	20	2.1	19	85	4	53	55	0	2	42	1.13
36499307--36499341	8	4.2	8	96	3	61	74	0	0	25	0.82
36499309--36499341	3	11.7	3	87	12	52	72	0	0	27	0.85
36499309--36499341	11	2.9	12	86	13	52	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36500754--36500859	44	2.4	44	79	6	117	25	20	26	27	1.99
36500943--36502468	132	11.6	132	89	1	2162	26	24	20	29	1.99
36500940--36502445	44	34.3	44	65	12	405	26	24	20	29	1.99
36502978--36503197	108	2.0	108	81	6	250	51	8	15	24	1.70
36512744--36512801	30	1.9	30	83	13	75	41	6	22	29	1.80
36513023--36513095	37	2.0	37	91	5	121	32	4	15	47	1.64
36513171--36513325	50	3.1	50	83	0	202	27	24	29	18	1.98
36516520--36516571	10	4.9	11	82	15	65	9	5	0	84	0.77
36516499--36516572	12	6.5	11	75	20	55	8	8	0	83	0.80
36519491--36519523	16	2.1	16	94	5	59	42	12	21	24	1.86
36521445--36521478	3	11.3	3	93	0	59	64	2	0	32	1.08
36539193--36539218	5	5.2	5	100	0	52	57	0	42	0	0.98
36548644--36548669	5	5.2	5	100	0	52	42	19	19	19	1.90
36548759--36548784	5	5.2	5	100	0	52	38	19	19	23	1.93
36548733--36548784	26	2.0	26	81	7	61	34	15	26	23	1.94
36549594--36549624	9	3.4	9	100	0	62	41	22	12	22	1.88
36550019--36550255	85	2.8	85	85	1	298	33	18	23	25	1.97
36550017--36550246	42	5.4	42	86	2	248	33	18	23	24	1.97
36561945--36562294	113	3.1	112	82	4	434	27	23	18	30	1.97
36561928--36562261	114	2.9	113	83	4	413	27	24	18	29	1.98
36562194--36562334	74	1.9	73	82	7	178	27	22	19	30	1.98
36562075--36562482	188	2.2	188	91	0	654	27	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36562263--36562794	114	4.6	113	81	5	561	25	23	19	31	1.98
36565879--36565941	20	3.3	19	78	15	67	55	6	0	38	1.25
36570401--36570498	48	2.0	48	98	0	187	47	27	10	14	1.76
36573794--36573951	33	4.7	33	69	12	124	28	23	15	32	1.95
36573797--36574021	101	2.2	101	93	0	387	28	24	14	31	1.95
36575948--36576199	130	2.0	129	95	1	461	37	15	3	43	1.66
36576703--36576808	24	4.4	24	68	14	74	18	25	20	34	1.96
36578736--36578845	50	2.2	51	88	3	168	24	20	7	47	1.76
36589383--36589421	20	1.9	21	94	5	71	38	10	12	38	1.78
36591124--36591159	17	2.1	17	89	0	54	30	2	5	61	1.33
36591700--36591735	16	2.2	16	90	0	54	11	61	0	27	1.30
36597341--36597388	24	2.0	24	100	0	96	29	33	4	33	1.77
36600273--36600303	3	10.3	3	100	0	62	32	32	0	35	1.58
36605830--36605898	35	2.0	35	91	0	111	24	17	10	47	1.78
36608980--36609019	21	1.9	21	89	0	62	42	20	10	27	1.83
36609233--36609586	176	2.0	176	97	0	672	37	20	7	33	1.82
36631752--36631861	50	2.3	48	84	7	143	38	3	2	55	1.32
36631655--36632076	207	2.0	208	99	0	828	36	8	8	46	1.65
36631959--36632084	51	2.6	49	82	9	143	38	3	2	56	1.28
36650157--36650350	95	2.0	97	90	2	311	37	15	15	31	1.89
36651459--36651493	14	2.5	14	85	0	52	22	57	2	17	1.53
36653210--36653257	24	2.0	24	95	0	87	33	6	8	52	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36658550--36658575	3	8.7	3	100	0	52	30	0	0	69	0.89
36670759--36670819	25	2.4	27	76	17	67	52	4	11	31	1.58
36671937--36671989	21	2.5	21	84	0	70	30	7	32	30	1.85
36678147--36678173	2	13.5	2	100	0	54	48	0	0	51	1.00
36680168--36680193	12	2.2	12	100	0	52	34	7	15	42	1.75
36687435--36687658	111	2.0	112	96	3	416	35	12	16	35	1.86
36687663--36687833	43	4.0	43	68	15	120	23	18	28	29	1.98
36688131--36688831	350	2.0	350	100	0	1402	29	8	22	39	1.84
36690317--36690432	54	2.1	54	91	1	187	42	15	19	22	1.89
36696398--36696455	22	2.6	22	81	7	64	41	17	5	36	1.72
36697283--36698248	100	9.3	100	70	11	582	25	24	20	29	1.99
36697335--36697617	50	5.7	50	74	1	280	24	26	21	28	1.99
36697250--36697618	50	7.4	49	70	4	245	24	24	21	29	1.99
36697575--36697959	168	2.3	168	89	1	567	26	24	18	30	1.98
36697906--36698251	50	6.9	50	71	1	262	26	23	21	28	1.99
36703241--36703283	17	2.8	15	83	13	52	23	2	0	74	0.93
36719003--36719037	18	1.9	18	88	11	54	14	2	5	77	1.07
36719212--36719323	45	2.5	44	82	4	136	27	25	14	33	1.94
36719440--36719772	44	7.6	44	67	10	135	24	26	22	27	2.00
36719427--36719776	132	2.7	132	94	0	619	23	25	23	27	2.00
36719818--36719993	50	3.5	50	74	0	181	26	19	19	34	1.96
36719779--36720007	100	2.3	100	89	0	341	27	18	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36720230--36720337	50	2.2	50	84	0	144	28	18	18	34	1.95
36719979--36720603	310	2.0	313	87	3	891	27	23	18	31	1.97
36720772--36720857	44	2.0	44	83	0	109	25	23	16	34	1.95
36722915--36722939	10	2.5	10	100	0	50	16	28	0	56	1.41
36723689--36723716	8	3.5	8	100	0	56	39	0	14	46	1.44
36725017--36725057	20	2.1	20	86	13	59	48	9	17	24	1.76
36725888--36725928	20	2.1	20	86	13	59	48	9	17	24	1.76
36728531--36728575	23	2.0	22	91	4	72	40	17	4	37	1.70
36728531--36728607	19	3.8	19	89	6	91	38	16	7	36	1.78
36732201--36732269	25	2.7	26	80	11	79	23	26	24	26	2.00
36739008--36739048	20	1.9	23	85	14	61	24	12	12	51	1.73
36742277--36742359	43	1.9	43	92	0	139	49	0	26	24	1.51
36742802--36742836	14	2.5	14	100	0	70	20	0	25	54	1.45
36748713--36748754	20	2.1	20	100	0	84	76	9	9	4	1.15
36751727--36751769	16	2.7	16	85	0	59	51	2	0	46	1.13
36778876--36778913	20	1.9	20	94	0	67	44	2	0	52	1.14
36785389--36785436	23	2.1	23	84	0	60	6	4	25	64	1.35
36789356--36789416	22	2.8	21	79	16	61	27	8	4	59	1.47
36789646--36789842	98	2.0	98	94	0	349	29	10	22	37	1.88
36799106--36799214	44	2.4	44	83	10	132	28	18	23	29	1.98
36800592--36800641	22	2.3	21	83	13	57	30	10	4	56	1.51
36801057--36801117	22	2.8	21	79	16	61	27	8	4	59	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36811600--36811648	16	3.1	16	100	0	98	36	6	36	20	1.78
36811880--36811914	18	2.0	17	88	5	52	54	0	0	45	0.99
36817974--36818267	84	3.4	85	83	5	360	37	23	9	29	1.87
36817961--36818273	169	1.8	172	85	5	445	35	23	9	30	1.88
36818369--36818398	15	2.1	14	93	6	51	90	0	0	10	0.47
36818402--36818451	20	2.5	21	80	9	59	54	2	0	44	1.11
36818434--36818484	23	2.2	23	86	13	70	60	0	3	35	1.15
36818462--36818564	10	11.1	9	70	15	68	60	2	2	33	1.27
36818444--36818490	11	4.2	12	83	5	55	65	0	6	27	1.16
36818463--36818544	9	8.8	9	72	10	58	59	1	2	36	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135