genome.fa.s8.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  67  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26705648--26705741	25	3.8	24	75	13	91	29	25	21	23	1.99
26706533--26708024	743	2.0	743	91	0	2396	25	16	25	32	1.96
26713084--26713170	25	3.5	25	85	0	129	32	22	20	24	1.98
26713073--26713170	50	2.0	50	93	0	169	31	23	20	24	1.98
26719071--26719120	17	3.0	17	75	13	59	26	28	6	40	1.79
26724273--26724385	55	2.1	55	93	0	190	33	15	11	38	1.84
26734957--26735000	18	2.4	18	85	14	63	34	13	15	36	1.87
26736096--26736291	78	2.5	77	87	1	257	43	19	5	31	1.72
26736096--26736292	39	5.1	39	78	2	207	43	19	5	31	1.72
26741768--26741986	30	7.4	30	82	8	261	25	26	13	35	1.92
26743690--26743719	11	2.7	11	94	0	51	26	3	0	70	1.03
26747018--26747045	10	2.8	10	100	0	56	32	10	7	50	1.64
26747479--26747593	29	3.9	29	79	1	131	22	28	11	37	1.89
26756886--26756920	9	3.8	9	85	7	52	74	2	0	22	0.95
26756911--26756950	18	2.4	17	91	8	64	67	5	5	22	1.30
26768548--26768621	32	2.4	29	86	10	94	33	18	6	40	1.77
26768554--26768621	31	2.2	32	91	2	111	32	20	7	39	1.80
26770215--26770398	50	3.7	51	78	6	196	21	31	22	24	1.98
26771598--26771665	28	2.3	29	92	5	111	32	19	25	23	1.97
26772020--26772079	27	2.2	27	82	5	68	26	15	21	36	1.93
26772029--26772467	27	16.3	27	80	8	398	21	19	17	41	1.90
26788011--26788114	55	1.9	55	97	0	199	35	12	18	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26789878--26789914	6	6.5	6	81	12	51	56	0	27	16	1.40
26790064--26790118	25	2.2	26	90	3	85	38	9	20	32	1.84
26793146--26793218	24	3.0	24	80	9	76	21	19	17	41	1.91
26793186--26793262	25	3.1	25	81	5	86	28	20	18	32	1.96
26797613--26797668	24	2.3	24	90	0	94	39	16	21	23	1.92
26809924--26809987	18	3.6	17	75	20	60	18	3	0	78	0.89
26809932--26809995	27	2.4	25	77	10	65	20	4	0	75	0.99
26809936--26809976	12	3.5	12	81	15	50	19	4	0	75	0.98
26816244--26816270	12	2.2	12	100	0	54	29	33	22	14	1.94
26822455--26822531	38	2.0	38	97	0	145	41	22	7	28	1.81
26824495--26824524	15	2.0	15	93	0	51	56	6	6	30	1.51
26837087--26837122	17	2.1	17	100	0	72	22	22	5	50	1.70
26841695--26841744	17	2.9	17	93	0	91	24	26	6	44	1.76
26843201--26843245	19	2.3	21	77	14	51	22	40	0	37	1.54
26866725--26866769	22	2.0	22	83	8	56	42	4	0	53	1.21
26866662--26866970	154	2.0	154	98	1	602	38	7	12	40	1.72
26869240--26869572	54	6.2	54	88	5	451	19	19	18	43	1.89
26869240--26869572	81	4.1	81	81	8	408	19	19	18	43	1.89
26869241--26869572	27	12.3	26	84	7	346	19	19	18	43	1.88
26872153--26872251	39	2.5	39	88	0	144	47	20	3	29	1.65
26875876--26875932	28	2.0	28	96	0	105	19	10	36	33	1.86
26877803--26877859	28	2.0	28	96	0	105	19	10	36	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26880464--26880597	42	3.2	42	78	7	103	46	21	14	17	1.84
26880482--26880597	42	2.8	43	82	8	132	45	20	14	18	1.85
26889823--26889874	15	3.2	15	72	27	52	48	19	9	23	1.78
26905522--26905563	7	6.0	7	100	0	84	57	0	42	0	0.99
26905506--26905563	21	2.8	22	89	7	86	60	3	36	0	1.14
26905693--26905733	1	41.0	1	100	0	82	100	0	0	0	0.00
26911313--26911362	6	8.8	6	91	4	70	0	0	30	70	0.88
26911319--26911362	5	8.2	5	92	5	52	0	0	29	70	0.88
26918903--26918934	15	2.2	15	94	5	57	65	0	3	31	1.08
26925165--26925207	21	2.0	21	90	0	68	48	11	20	18	1.79
26932454--26932639	50	3.7	50	78	6	164	29	22	26	22	1.99
26932841--26932889	20	2.5	20	78	15	57	57	6	26	10	1.55
26934670--26934795	66	2.0	63	82	7	155	34	3	2	59	1.26
26934728--26934824	19	5.1	19	71	16	74	37	2	3	57	1.26
26934841--26934930	33	2.7	33	92	0	153	43	8	2	45	1.47
26934859--26934915	15	3.6	15	70	21	53	49	5	1	43	1.35
26934835--26934999	18	9.7	18	70	17	93	41	8	2	47	1.47
26934874--26934999	51	2.5	51	86	2	173	42	8	2	46	1.47
26944074--26944128	23	2.4	23	90	3	85	16	18	16	49	1.81
26954193--26955808	808	2.0	808	99	0	3216	35	14	17	32	1.91
26958334--26958372	16	2.4	16	86	0	60	38	5	25	30	1.78
26958560--26958676	55	2.1	54	82	7	137	50	4	1	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26960141--26960244	49	2.1	49	87	3	147	49	8	7	34	1.62
26963510--26963625	40	2.7	44	72	11	123	48	9	12	29	1.73
26963558--26963674	49	2.2	49	85	10	144	45	10	13	30	1.77
26963611--26963636	11	2.4	11	100	0	52	46	7	11	34	1.69
26969235--26969307	37	2.0	37	94	0	128	31	21	20	26	1.98
26978577--26978614	19	2.0	19	85	10	51	21	42	0	36	1.53
26985311--26985348	13	2.8	14	80	19	53	65	5	5	23	1.34
26985698--26985801	26	3.8	27	72	14	81	57	6	2	32	1.39
26985973--26986017	22	2.2	20	84	8	54	62	11	22	4	1.46
26986196--26986264	19	3.5	19	84	7	102	33	11	13	42	1.80
26986707--26986822	44	2.6	44	84	2	153	25	21	20	31	1.98
26987080--26987394	88	3.6	88	77	3	267	23	26	23	26	2.00
26988708--26988740	14	2.3	15	89	5	50	24	33	15	27	1.95
26993641--26993676	3	12.0	3	88	11	56	63	2	0	33	1.08
26993641--26993684	12	3.5	13	87	12	65	61	4	0	34	1.16
26994013--26994062	19	2.6	19	96	0	91	36	14	12	38	1.83
27006920--27006992	33	2.2	32	88	7	103	26	26	23	24	2.00
27014155--27014208	27	2.0	27	100	0	108	33	18	29	18	1.95
27016448--27016496	20	2.5	20	81	15	66	12	24	6	57	1.58
27016698--27016826	49	2.6	48	78	8	127	23	25	20	30	1.99
27016746--27016888	50	2.9	50	77	2	144	20	30	20	27	1.98
27022116--27022233	59	2.0	59	100	0	236	28	6	11	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27028692--27028753	29	2.1	29	93	0	106	38	4	14	41	1.67
27030935--27030993	30	1.9	31	86	3	84	47	3	18	30	1.65
27033845--27034336	50	9.6	50	82	5	493	27	19	29	22	1.98
27033845--27034336	100	4.8	100	85	2	554	27	19	29	22	1.98
27033845--27034336	150	3.2	150	83	6	578	27	19	29	22	1.98
27045256--27045344	27	3.3	27	93	0	151	43	22	15	17	1.87
27045609--27045704	26	3.7	26	84	0	120	16	20	19	42	1.89
27045830--27045886	28	2.0	28	89	0	87	19	22	29	28	1.98
27050662--27050689	11	2.5	11	100	0	56	42	0	17	39	1.50
27052225--27052295	36	2.0	36	97	0	133	36	15	14	33	1.87
27053719--27053760	5	8.4	5	82	10	50	78	4	0	16	0.91
27053725--27053758	16	2.1	16	88	0	50	82	5	0	11	0.83
27056570--27056620	26	1.9	27	88	4	77	54	7	1	35	1.40
27059263--27059419	43	3.7	44	80	6	164	28	21	21	29	1.98
27068394--27068431	19	2.0	20	89	5	60	42	13	5	39	1.66
27072133--27072183	26	1.9	27	88	4	77	54	7	1	35	1.40
27079906--27080023	58	2.0	58	95	0	209	38	19	11	31	1.87
27095078--27095262	20	9.2	20	64	9	81	37	18	28	15	1.92
27095059--27095278	40	5.5	40	85	0	280	36	18	28	16	1.93
27103143--27103262	62	1.9	62	98	0	231	40	15	6	37	1.74
27105741--27105944	59	3.4	59	93	0	354	52	9	5	32	1.56
27107886--27107910	12	2.1	12	100	0	50	76	0	8	16	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27128891--27129084	41	4.6	42	79	7	205	36	26	17	20	1.94
27128938--27129091	84	1.8	84	97	0	290	37	26	15	20	1.93
27131725--27131784	30	2.0	31	86	3	86	20	36	0	43	1.52
27132265--27132290	5	5.2	5	100	0	52	19	19	19	42	1.90
27142871--27142902	16	2.1	16	88	11	50	31	0	0	68	0.90
27143202--27143294	41	2.3	41	79	7	107	24	2	11	61	1.41
27146629--27146666	15	2.4	16	86	4	51	23	2	28	44	1.67
27151312--27151344	11	2.9	12	86	13	52	6	18	0	75	1.00
27151342--27151402	29	2.1	28	87	3	86	21	3	8	67	1.32
27151342--27151403	28	2.2	29	88	2	90	20	4	8	66	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135