genome.fa.s8.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  103  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38239462--38239507	19	2.5	19	79	13	51	56	4	0	39	1.19
38245368--38245456	44	2.0	44	84	4	117	23	24	21	30	1.99
38245317--38245643	132	2.5	132	88	1	485	23	22	22	31	1.99
38245815--38249117	132	25.1	132	89	0	4957	24	23	21	31	1.98
38261323--38261349	10	2.7	10	100	0	54	74	0	7	18	1.05
38262313--38262339	10	2.7	10	100	0	54	74	0	7	18	1.05
38261317--38263296	990	2.0	990	100	0	3960	42	16	15	26	1.87
38268288--38268319	14	2.1	16	88	11	50	43	0	3	53	1.16
38271398--38271455	29	2.0	29	93	0	98	22	8	15	53	1.69
38280236--38280265	15	1.9	16	93	6	53	43	0	0	56	0.99
38292851--38293059	45	4.6	45	88	0	274	23	19	10	47	1.79
38313225--38313271	21	2.2	22	85	11	62	34	2	12	51	1.52
38313337--38313383	21	2.2	22	85	11	62	34	2	12	51	1.52
38313186--38313409	112	2.0	112	98	1	432	33	9	12	43	1.75
38323543--38323642	45	2.2	45	81	0	119	27	19	14	40	1.89
38323567--38323706	45	3.1	45	79	8	133	23	20	15	40	1.90
38323589--38323760	45	3.8	45	83	4	177	22	22	14	41	1.89
38328262--38328304	22	2.0	22	86	9	61	44	13	0	41	1.44
38329447--38329508	32	1.9	32	93	0	106	29	0	14	56	1.39
38329628--38329666	16	2.4	16	91	0	60	43	5	30	20	1.73
38333856--38333889	6	5.7	6	100	0	68	47	0	0	52	1.00
38334879--38335118	119	2.0	120	99	0	473	39	17	13	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38337074--38337173	51	2.0	51	92	4	166	24	28	2	46	1.64
38337065--38337157	11	8.7	11	68	18	63	23	29	2	45	1.65
38342578--38342639	17	3.6	17	100	0	124	24	14	6	54	1.63
38342626--38342711	42	2.0	43	97	2	165	39	6	9	44	1.64
38343089--38343262	51	3.4	51	87	1	278	19	29	23	27	1.98
38343080--38343271	101	1.9	101	97	0	366	19	29	25	26	1.99
38345498--38345696	93	2.1	93	100	0	398	41	4	8	46	1.52
38347172--38347211	6	6.7	6	94	0	71	35	45	0	20	1.51
38347423--38347497	37	2.0	39	87	10	111	32	4	1	62	1.22
38347451--38347509	28	2.1	28	84	3	75	25	3	5	66	1.28
38347650--38347694	7	6.3	7	79	5	54	46	37	0	15	1.46
38347650--38347698	22	2.2	22	88	0	71	44	40	0	14	1.45
38354917--38354957	20	2.0	20	95	0	73	24	7	4	63	1.40
38356165--38356270	34	3.2	33	85	5	140	43	0	14	42	1.45
38356329--38356725	126	3.2	126	84	6	477	38	15	16	29	1.90
38360873--38360927	27	2.0	27	100	0	110	45	3	10	40	1.57
38360875--38360921	16	3.2	16	66	27	50	42	4	12	40	1.63
38361812--38361865	24	2.1	24	83	10	63	68	0	1	29	1.00
38362829--38362925	48	2.0	48	100	0	194	16	12	30	40	1.85
38369293--38369346	24	2.3	22	79	17	56	22	12	9	55	1.65
38369403--38369522	24	5.2	22	76	5	89	22	16	6	54	1.65
38381769--38381825	27	2.1	27	96	0	105	14	26	40	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38381769--38381845	27	2.9	27	88	3	93	16	24	37	20	1.93
38382066--38382103	19	2.0	19	89	0	58	50	7	5	36	1.54
38382199--38382285	22	3.7	22	92	7	129	54	13	0	32	1.40
38390005--38390046	21	2.0	20	90	4	66	50	33	0	16	1.46
38390005--38390048	13	3.1	14	80	9	54	47	34	0	18	1.49
38391176--38391344	87	1.9	88	85	3	234	49	10	13	27	1.74
38391091--38391346	88	2.8	91	79	8	297	47	10	14	28	1.77
38391679--38391870	95	2.0	97	97	2	370	50	6	10	32	1.62
38392192--38392270	33	2.5	33	87	6	110	62	0	0	37	0.96
38410454--38410499	23	2.0	23	83	8	58	21	21	39	17	1.93
38420991--38421021	16	2.0	16	93	6	55	19	16	19	45	1.86
38421612--38421685	28	2.7	28	82	2	96	27	13	10	48	1.75
38426588--38426776	90	2.1	91	94	1	344	38	17	6	37	1.77
38436344--38436382	20	2.0	20	85	10	53	46	17	0	35	1.49
38442326--38442426	42	2.4	42	76	3	105	29	16	19	33	1.94
38446930--38447034	28	3.8	28	87	3	142	39	10	23	26	1.87
38446930--38447048	28	4.3	27	83	7	141	35	13	24	26	1.93
38449649--38449674	3	8.7	3	100	0	52	30	0	34	34	1.58
38450631--38450680	26	1.9	26	87	0	73	66	2	0	32	1.03
38455934--38456193	127	2.1	122	89	4	387	37	8	16	38	1.78
38455999--38456230	127	1.8	127	81	5	292	40	9	17	32	1.81
38457271--38457313	21	2.0	21	82	8	52	27	18	4	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38458867--38459072	104	2.0	105	94	0	360	31	17	23	27	1.97
38463416--38463490	39	1.9	39	86	5	107	36	4	16	44	1.66
38467171--38467661	39	12.6	39	90	0	741	32	4	19	44	1.70
38471729--38471880	51	3.0	51	78	5	173	26	15	26	30	1.96
38471731--38471880	50	3.0	50	78	4	176	26	16	26	30	1.96
38472099--38472130	16	2.0	16	93	0	55	59	0	15	25	1.36
38472120--38472170	25	2.0	26	92	3	86	50	11	13	23	1.74
38473747--38474451	70	10.1	70	79	6	594	26	18	25	29	1.98
38473776--38474426	210	3.1	208	82	2	712	26	18	25	29	1.98
38479891--38479940	25	2.0	26	84	4	66	60	0	32	8	1.26
38488931--38489004	37	2.0	37	97	0	139	33	2	22	40	1.69
38493574--38493758	92	2.0	93	98	1	363	25	30	12	30	1.93
38508236--38508380	56	2.7	54	84	11	192	28	22	28	21	1.99
38511950--38511999	18	2.7	18	84	3	64	42	0	18	40	1.50
38519562--38519605	19	2.4	19	85	7	56	54	2	2	40	1.25
38519810--38519871	26	2.3	28	78	16	76	56	1	4	37	1.30
38520768--38520805	20	1.9	20	89	10	60	36	2	13	47	1.56
38521263--38521359	31	3.3	31	61	16	78	30	9	14	45	1.76
38521254--38521372	58	2.1	57	98	1	229	28	9	13	48	1.73
38522494--38522525	13	2.5	13	100	0	64	28	6	18	46	1.73
38524731--38524772	6	7.0	6	94	0	57	7	0	42	50	1.30
38524731--38524771	12	3.4	12	89	0	64	7	0	41	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38527935--38527960	3	8.7	3	100	0	52	34	30	0	34	1.58
38529774--38529799	3	8.7	3	100	0	52	65	0	34	0	0.93
38533172--38533210	18	2.2	17	86	13	53	33	0	20	46	1.51
38533422--38533544	23	5.3	23	84	1	156	20	21	26	30	1.98
38533422--38533537	46	2.5	46	91	1	187	19	23	26	30	1.98
38537558--38537650	47	2.0	48	84	2	125	23	16	27	32	1.96
38538842--38538866	11	2.3	11	100	0	50	68	16	0	16	1.22
38538906--38538972	9	7.4	9	80	6	73	28	10	19	41	1.84
38540785--38540846	30	2.1	30	84	0	79	35	4	24	35	1.77
38541032--38541070	18	2.2	17	86	13	53	33	0	20	46	1.51
38541298--38541370	23	3.2	23	78	3	85	23	16	26	34	1.95
38545462--38545626	75	2.2	76	95	4	309	52	2	4	40	1.36
38558157--38558265	33	3.3	33	81	2	112	46	11	22	19	1.81
38561245--38561282	20	1.9	20	94	0	67	50	21	10	18	1.76
38561530--38561692	72	2.3	72	83	0	191	39	23	8	28	1.84
38577464--38577500	18	2.1	18	100	0	74	27	21	21	29	1.99
38579609--38579662	27	2.0	27	82	7	65	55	0	9	35	1.32
38580503--38580555	25	2.1	25	85	0	70	26	20	20	32	1.98
38590174--38590204	6	5.3	6	92	7	55	19	16	16	48	1.81
38591108--38591144	19	1.9	19	100	0	74	62	0	0	37	0.96
38591111--38591164	19	2.8	19	81	13	58	68	3	0	27	1.06
38591249--38591319	31	2.3	32	76	11	76	25	8	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38595615--38595933	159	2.0	159	100	0	638	24	23	10	41	1.85
38596577--38596864	30	10.0	30	72	10	192	26	19	17	36	1.94
38596592--38596837	85	2.9	85	84	3	282	26	19	17	36	1.94
38599668--38599718	21	2.5	21	77	3	59	60	5	1	31	1.31
38603900--38603931	16	2.1	16	88	11	50	31	28	6	34	1.82
38605891--38606109	40	5.5	40	83	3	273	23	27	14	34	1.94
38605891--38606109	79	2.8	79	88	4	309	23	27	14	34	1.94
38606652--38606707	16	3.5	16	82	0	76	42	10	16	30	1.82
38607758--38607808	26	2.0	26	96	0	93	27	15	23	33	1.95
38612313--38612382	29	2.5	28	88	4	104	28	18	20	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135