genome.fa.s8.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  110  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40598101--40598137	19	1.9	19	94	0	65	67	0	2	29	1.04
40615490--40615554	29	2.2	31	86	5	89	35	7	13	43	1.73
40618166--40618195	16	1.9	15	93	6	51	60	0	10	30	1.30
40628356--40628857	125	4.0	124	84	3	639	30	16	22	30	1.95
40628356--40628857	251	2.0	250	90	1	799	30	16	22	30	1.95
40632048--40633146	22	50.7	22	80	4	483	25	0	30	43	1.58
40632039--40633296	65	19.4	65	87	2	1535	24	0	30	43	1.58
40632040--40633296	43	29.0	44	84	3	1363	24	0	30	43	1.58
40633546--40633579	17	2.1	17	94	5	61	5	29	17	47	1.71
40633887--40633926	18	2.2	18	90	0	62	42	7	30	20	1.79
40637389--40637451	4	15.8	4	100	0	126	50	25	0	23	1.49
40638141--40638174	14	2.2	16	90	10	54	52	0	2	44	1.16
40639132--40639371	120	2.0	119	99	0	471	30	7	19	42	1.79
40641093--40641364	131	2.1	131	90	0	418	36	13	12	37	1.84
40642545--40642585	19	2.2	19	86	8	57	78	2	7	12	1.06
40642941--40643066	44	2.9	46	79	12	131	30	23	18	27	1.98
40643077--40643248	93	1.9	90	84	6	229	27	21	19	30	1.98
40643169--40643522	136	2.6	136	88	4	507	29	21	18	31	1.97
40643418--40643654	89	2.7	89	83	3	293	28	22	19	29	1.98
40642999--40643656	44	14.7	44	70	11	295	28	21	19	30	1.97
40644540--40644579	17	2.3	18	87	8	57	5	10	5	80	1.02
40649207--40649481	131	2.1	131	88	1	408	35	14	12	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40649775--40649823	3	16.3	3	100	0	98	65	0	0	34	0.93
40650701--40650741	19	2.2	19	86	8	57	78	2	7	12	1.06
40650696--40650742	24	2.0	24	83	8	60	76	4	6	12	1.12
40655407--40655550	72	2.0	72	97	0	270	34	12	17	35	1.87
40660891--40660957	29	2.3	28	82	7	80	41	17	16	23	1.89
40669480--40669527	23	2.1	23	84	0	60	39	18	14	27	1.90
40671419--40671454	17	2.1	18	89	5	56	44	5	0	50	1.25
40677551--40677584	2	17.0	2	93	0	59	47	0	2	50	1.16
40677553--40677655	51	2.0	52	94	1	181	38	11	5	43	1.65
40683839--40683975	54	2.4	54	80	8	150	26	17	24	31	1.97
40687101--40687162	27	2.3	28	81	10	76	25	20	11	41	1.86
40688471--40688508	15	2.4	16	91	4	60	76	0	23	0	0.79
40691616--40691777	85	1.9	85	81	0	198	30	16	16	37	1.91
40692125--40692163	14	2.8	14	96	0	69	51	17	15	15	1.77
40700415--40700485	31	2.3	32	85	7	101	45	4	8	42	1.54
40702075--40702387	109	2.9	109	94	0	527	43	20	16	19	1.88
40702075--40702489	109	3.8	109	87	1	514	44	20	15	20	1.87
40704472--40704719	99	2.5	100	96	2	455	36	13	15	34	1.86
40704305--40704719	208	2.0	201	85	7	559	36	14	15	32	1.89
40706227--40706283	25	2.3	26	85	8	75	14	3	15	66	1.38
40706666--40706783	31	3.8	32	69	10	84	38	5	14	42	1.68
40709431--40709588	79	2.0	79	91	1	255	32	9	11	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40709542--40709685	52	2.6	54	76	17	145	47	8	10	34	1.68
40709549--40709664	58	2.0	59	86	8	166	49	8	9	32	1.66
40710511--40710550	19	2.0	20	85	14	55	47	0	0	52	1.00
40714927--40714970	20	2.2	20	91	0	70	36	0	2	61	1.09
40714885--40714976	31	2.9	31	71	12	80	35	1	1	61	1.10
40716167--40716200	16	2.2	16	89	5	52	20	2	0	76	0.92
40716474--40716505	14	2.3	14	100	0	64	43	12	6	37	1.68
40717637--40717686	22	2.2	22	82	10	57	48	6	10	36	1.61
40717966--40718213	113	2.2	113	100	0	496	35	11	19	33	1.88
40719122--40719149	9	3.1	9	100	0	56	32	10	10	46	1.73
40719685--40719723	11	3.7	10	83	10	51	20	5	0	74	1.01
40719677--40719723	22	2.2	22	96	3	87	21	6	0	72	1.07
40724584--40724650	29	2.3	29	81	0	80	38	22	16	22	1.92
40727174--40727225	16	3.3	16	76	12	63	17	21	0	61	1.34
40727313--40727344	2	16.5	2	93	6	57	50	0	0	50	1.00
40728869--40728903	14	2.6	13	91	8	61	20	0	28	51	1.47
40729030--40729078	24	2.0	25	84	4	64	63	6	4	26	1.36
40729317--40729365	24	2.0	25	88	8	73	18	0	12	69	1.19
40729320--40729376	26	2.3	24	78	6	60	21	3	10	64	1.39
40731160--40731242	29	2.8	29	76	5	78	40	20	1	37	1.60
40734759--40734852	43	2.2	43	94	0	161	29	17	8	44	1.78
40735969--40735998	10	2.8	11	90	10	53	10	6	6	76	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40739653--40739746	43	2.2	43	94	0	161	29	17	8	44	1.78
40740863--40740892	10	2.8	11	90	10	53	10	6	6	76	1.15
40741430--40741460	9	3.3	9	91	8	53	12	0	0	87	0.55
40741428--40741459	15	2.1	16	94	5	57	15	0	0	84	0.63
40741594--40741623	15	1.9	16	93	6	53	46	6	0	46	1.29
40742065--40742111	12	3.8	12	83	8	51	34	4	8	53	1.51
40743863--40743908	19	2.4	18	82	10	56	21	19	10	47	1.80
40744443--40744511	34	2.0	34	100	0	138	37	11	33	17	1.86
40750161--40750465	45	6.9	43	70	10	184	30	19	22	27	1.98
40750159--40750465	89	3.4	88	87	6	431	30	19	22	27	1.98
40750161--40750549	89	4.4	89	83	4	259	30	18	22	28	1.97
40751642--40751671	10	2.8	11	90	10	53	10	6	6	76	1.15
40752242--40752280	12	3.2	12	82	13	53	35	10	0	53	1.35
40752727--40752773	12	3.8	12	83	8	51	34	4	8	53	1.51
40756902--40756961	29	2.0	30	83	3	77	41	3	8	46	1.50
40760377--40760410	16	2.1	16	88	0	50	50	11	11	26	1.73
40762097--40762139	20	2.1	21	86	4	61	62	2	9	25	1.37
40767849--40768661	441	1.8	440	99	0	1563	31	8	9	49	1.67
40773620--40773699	31	2.7	29	84	9	92	40	10	10	40	1.72
40778225--40778250	2	13.0	2	100	0	52	50	0	0	50	1.00
40789130--40789170	20	2.0	20	85	0	55	36	4	0	58	1.20
40789272--40789313	20	2.0	21	86	13	61	28	2	4	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40790326--40790572	43	5.8	42	81	4	262	26	27	18	27	1.98
40790329--40790605	86	3.2	86	81	6	278	28	27	16	27	1.97
40790879--40790914	16	2.3	16	90	4	56	50	5	2	41	1.40
40795314--40795383	9	8.0	9	79	9	74	34	0	18	47	1.49
40795318--40795383	34	1.9	34	81	6	80	33	0	18	48	1.48
40795435--40795460	13	2.0	13	100	0	52	38	7	0	53	1.30
40797703--40797734	15	2.1	15	94	0	55	40	12	31	15	1.85
40798987--40799025	20	2.0	20	84	0	51	51	0	2	46	1.14
40799448--40799540	41	2.3	41	83	3	107	18	24	19	37	1.94
40801109--40801158	24	2.1	24	88	0	73	34	6	8	52	1.55
40801118--40801164	24	2.0	24	91	0	76	36	6	8	48	1.59
40802458--40802513	28	2.0	28	96	0	103	28	16	28	26	1.97
40809803--40810072	126	2.2	125	93	3	454	33	18	20	27	1.96
40810055--40810095	13	3.1	13	79	6	55	26	17	26	29	1.97
40810049--40810093	14	3.3	14	81	6	65	24	20	26	28	1.99
40810092--40810133	21	2.0	21	100	0	84	23	0	33	42	1.55
40810156--40810198	12	3.3	12	84	15	59	55	0	0	44	0.99
40810159--40810198	7	5.9	7	83	16	57	55	0	0	45	0.99
40810299--40810357	21	2.8	22	80	10	61	6	22	42	28	1.79
40810598--40810640	18	2.4	18	88	0	59	44	9	27	18	1.80
40811286--40811311	7	3.7	7	100	0	52	57	15	0	26	1.38
40812359--40812431	22	3.3	22	80	14	62	47	2	30	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40812376--40812417	11	3.8	11	96	0	75	47	4	28	19	1.69
40813281--40813348	30	2.3	29	82	12	77	36	4	4	54	1.41
40813952--40814001	14	3.6	14	83	0	55	14	12	8	66	1.45
40817710--40817768	17	3.3	17	72	21	57	38	0	23	37	1.55
40817697--40817769	37	2.0	37	97	0	137	39	0	23	36	1.55
40817697--40817756	20	3.2	19	73	22	63	41	0	21	36	1.54
40817854--40817977	40	3.2	39	70	11	121	21	23	20	33	1.97
40817811--40818069	75	3.5	75	85	1	351	22	23	23	30	1.99
40817894--40818025	35	3.6	35	70	16	97	23	21	25	30	1.99
40822158--40822195	19	2.0	19	89	0	58	21	2	23	52	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135