genome.fa.s8.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  32  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12895675--12895719	23	1.9	23	86	4	63	55	4	8	31	1.51
12903203--12903378	46	3.8	46	89	0	273	38	8	22	30	1.84
12906768--12906877	51	2.2	51	94	0	193	27	22	15	34	1.94
12908001--12908100	42	2.4	42	87	0	137	40	13	26	21	1.89
12909210--12909293	40	2.1	40	82	4	98	40	21	7	30	1.80
12909880--12909921	5	8.4	5	100	0	84	59	0	0	40	0.97
12910871--12910967	21	4.7	21	84	2	117	41	15	27	15	1.87
12932313--12932376	15	4.2	14	70	18	56	43	3	0	53	1.16
12934911--12934936	6	4.3	6	100	0	52	19	15	65	0	1.27
12935785--12935938	80	1.9	78	96	2	281	32	19	6	41	1.77
12935785--12935938	78	2.0	80	94	2	276	32	19	6	41	1.77
12937043--12937090	18	2.9	16	77	17	53	52	2	0	45	1.12
12943832--12944059	113	2.0	114	98	1	440	38	11	8	41	1.72
12951210--12951252	10	4.8	9	81	18	54	67	0	0	32	0.91
12951217--12951250	17	2.1	17	94	5	61	64	0	0	35	0.94
12951197--12951252	28	2.1	28	90	6	89	62	0	0	37	0.95
12960129--12960190	1	62.0	1	90	0	61	6	3	1	88	0.66
12960119--12960198	38	2.1	39	92	2	135	10	7	2	80	1.00
12962203--12962227	6	4.2	6	100	0	50	68	0	0	32	0.90
12964650--12964709	29	2.0	30	83	6	77	50	1	1	46	1.21
12964909--12965061	83	1.8	83	81	10	188	41	2	4	50	1.36
12982893--12982944	26	2.0	26	85	3	70	30	0	1	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12983353--12983408	24	2.3	24	96	0	103	41	10	21	26	1.86
12983725--12983763	18	2.2	18	85	0	51	38	5	7	48	1.54
12986237--12986284	23	2.1	23	88	3	71	43	2	8	45	1.45
12991752--12991804	20	2.6	20	85	8	63	22	7	0	69	1.13
12992316--12992372	20	2.7	21	77	15	64	35	10	1	52	1.46
12992319--12992372	22	2.5	22	80	11	60	35	11	1	51	1.48
12992436--12992480	18	2.5	19	75	17	51	35	2	2	60	1.22
12992468--12992516	11	4.5	11	82	10	64	30	0	0	69	0.89
12998430--12998466	17	2.2	17	90	9	58	35	0	8	56	1.29
12998429--12998468	18	2.3	18	83	16	57	35	0	7	57	1.27
12998447--12998533	32	2.7	31	78	13	88	27	3	3	65	1.25
13002056--13002082	2	13.5	2	100	0	54	48	0	0	51	1.00
13007528--13007560	18	1.9	17	88	11	50	54	3	6	36	1.41
13017919--13017959	21	2.0	21	90	0	64	26	21	29	21	1.99
13019488--13019521	4	8.5	4	100	0	68	23	0	26	50	1.50
13020612--13020687	19	3.8	19	78	15	82	39	0	3	56	1.18
13020607--13020695	19	4.5	18	71	20	63	38	0	3	58	1.15
13029053--13029109	19	3.2	18	73	19	57	29	8	0	61	1.26
13034741--13034767	2	13.5	2	100	0	54	0	48	0	51	1.00
13055281--13055361	39	2.1	39	90	0	126	54	4	19	20	1.63
13055292--13055356	20	3.3	20	70	20	55	56	6	16	20	1.61
13060730--13060786	19	3.2	19	88	11	77	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13060702--13060787	10	8.4	10	75	20	72	39	0	3	56	1.16
13060730--13060786	2	32.5	2	74	25	58	43	0	0	56	0.99
13060730--13060786	7	8.1	8	76	23	58	43	0	0	56	0.99
13067630--13067660	14	2.2	14	94	0	53	38	0	12	48	1.42
13073167--13073205	18	2.2	18	85	0	51	61	2	0	35	1.10
13115066--13115614	274	2.0	275	99	0	1091	26	12	22	38	1.90
13116027--13116674	247	2.7	246	86	6	824	43	13	6	36	1.71
13121535--13121587	21	2.5	19	77	19	52	45	3	1	49	1.31
13124718--13124747	2	15.0	2	100	0	60	50	0	0	50	1.00
13129143--13129183	17	2.4	17	95	0	73	36	36	12	14	1.84
13131226--13131435	103	2.0	103	100	0	420	49	6	22	21	1.73
13135398--13135453	29	1.9	29	81	0	67	42	12	3	41	1.60
13138501--13138617	51	2.3	51	92	0	198	27	24	14	33	1.94
13150262--13150292	16	1.9	16	93	0	53	35	3	19	41	1.67
13166869--13166948	42	1.9	42	82	10	101	17	28	35	18	1.94
13171427--13171487	30	1.9	32	87	12	90	52	13	0	34	1.40
13176245--13176306	27	2.3	27	85	0	79	50	1	0	48	1.10
13189938--13189975	2	19.0	2	100	0	76	0	50	0	50	1.00
13189975--13190006	2	16.0	2	100	0	64	50	0	0	50	1.00
13190579--13190701	60	2.0	60	98	0	237	29	26	25	18	1.98
13190884--13190908	4	6.2	4	100	0	50	24	0	0	76	0.80
13196531--13196591	13	4.7	13	85	0	86	40	26	1	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13198569--13198626	24	2.4	25	82	5	66	43	8	0	48	1.34
13199100--13199129	2	15.0	2	100	0	60	50	0	0	50	1.00
13199574--13199606	5	6.6	5	92	0	57	24	0	39	36	1.56
13199905--13199967	29	2.2	29	83	11	76	46	14	19	20	1.84
13202721--13202801	31	2.6	31	78	5	85	49	11	13	25	1.75
13203571--13203634	3	21.3	3	100	0	128	65	0	34	0	0.93
13203921--13204058	37	3.7	37	70	13	111	31	5	12	51	1.61
13203875--13204093	76	2.8	78	76	8	216	35	4	10	49	1.58
13209158--13209659	154	3.3	153	88	4	714	29	11	7	50	1.66
13209158--13209659	155	3.3	149	87	5	679	29	11	7	50	1.66
13210047--13210075	13	2.2	13	100	0	58	0	37	0	62	0.96
13210105--13210166	27	2.3	27	85	0	88	6	37	32	24	1.81
13211729--13211777	22	2.2	22	78	7	55	28	12	0	59	1.34
13213192--13213442	125	2.0	122	94	2	439	37	21	12	28	1.89
13225855--13225908	9	5.8	9	84	4	54	22	35	3	38	1.72
13225855--13225901	10	4.9	10	82	7	53	25	31	4	38	1.75
13228968--13229006	14	2.8	14	88	7	53	46	0	2	51	1.14
13231786--13231824	20	2.0	20	85	10	53	30	5	2	61	1.31
13238134--13238166	6	5.5	6	100	0	66	48	0	0	51	1.00
13249771--13249856	21	4.1	21	72	11	68	32	3	3	60	1.30
13249988--13250032	23	2.0	23	86	0	63	51	6	2	40	1.41
13268635--13268683	23	2.2	22	89	10	73	42	0	30	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13268728--13268776	19	2.6	18	78	18	55	48	4	22	24	1.67
13271985--13272018	15	2.2	16	89	5	52	26	0	17	55	1.42
13272440--13272972	264	2.0	266	98	0	1034	27	7	8	56	1.55
13273178--13273372	98	2.0	98	91	0	318	28	10	24	36	1.89
13273780--13273810	7	4.4	7	100	0	62	70	0	12	16	1.16
13275056--13275369	134	2.3	134	84	1	396	38	13	15	32	1.86
13275255--13275477	99	2.3	99	86	3	313	39	12	15	32	1.84
13275142--13275586	233	1.9	232	87	2	651	40	12	15	32	1.85
13275374--13276003	134	4.7	134	81	2	710	37	12	17	32	1.87
13275061--13275735	366	1.8	367	85	0	949	38	12	15	32	1.86
13275395--13276003	268	2.3	267	84	0	797	37	12	17	32	1.87
13286136--13286544	196	2.1	193	90	3	649	41	14	5	38	1.69
13287522--13287546	13	1.9	13	100	0	50	40	24	4	32	1.73
13296648--13296953	84	3.6	84	80	0	290	20	10	35	33	1.87
13298002--13298040	20	2.0	20	100	0	78	30	20	23	25	1.98
13299197--13299227	13	2.4	13	94	0	53	61	3	0	35	1.12
13299308--13299423	37	3.1	37	87	0	151	18	20	11	50	1.77
13299425--13299511	37	2.4	37	78	3	95	18	24	14	42	1.88
13305602--13305661	13	4.5	13	85	2	84	36	21	1	40	1.64
13305602--13305686	39	2.1	41	82	10	104	36	22	2	38	1.67
13307620--13307667	25	1.9	25	87	8	71	47	2	2	47	1.25
13319044--13319106	32	2.0	32	87	0	90	36	3	14	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13322636--13322677	21	1.9	22	85	9	59	71	0	4	23	1.05
13326232--13326279	23	2.1	23	84	7	62	18	33	20	27	1.96
13326244--13326308	25	2.7	24	79	9	69	20	26	23	30	1.98
13326365--13326428	25	2.6	25	85	9	78	25	28	17	29	1.97
13327237--13327282	21	2.0	21	84	16	56	17	8	28	45	1.78
13341341--13341444	43	2.5	42	80	13	135	73	0	4	21	1.08
13341383--13341442	7	8.3	7	74	18	52	76	1	3	18	1.00
13349385--13349428	22	2.0	22	100	0	88	27	13	22	36	1.92
13350851--13350896	14	3.5	13	82	11	58	41	2	4	52	1.33
13350851--13350903	13	4.0	12	83	11	52	45	1	3	49	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135