genome.fa.s8.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  132  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47479345--47479375	16	1.9	16	93	0	53	70	9	0	19	1.14
47480351--47481326	44	22.2	44	63	13	231	26	23	19	29	1.98
47480248--47481399	132	8.7	132	95	0	1867	26	24	19	29	1.99
47482731--47482772	21	2.0	21	90	9	68	14	14	0	71	1.15
47482731--47482772	7	6.0	7	79	20	52	14	14	0	71	1.15
47485637--47485676	19	2.0	20	85	4	55	47	7	20	25	1.75
47485709--47485734	13	2.0	13	100	0	52	46	15	7	30	1.74
47488166--47488200	16	2.2	16	94	0	61	62	14	2	20	1.43
47489129--47489166	20	1.9	20	94	0	67	63	5	2	28	1.30
47492488--47492545	29	1.9	31	86	13	86	50	1	3	44	1.29
47493847--47493898	27	1.9	27	84	0	68	25	28	25	21	1.99
47494041--47494324	115	2.6	107	77	11	304	26	1	14	57	1.46
47502843--47502891	25	2.0	25	88	8	73	20	16	10	53	1.72
47503606--47503635	14	2.1	14	93	0	51	83	0	16	0	0.65
47503605--47503640	18	1.9	18	88	5	54	80	0	19	0	0.71
47503608--47503640	11	2.9	12	86	13	52	81	0	18	0	0.68
47504869--47505806	44	21.7	44	70	13	391	29	20	22	27	1.98
47505174--47505712	84	6.3	84	75	10	421	28	21	22	27	1.99
47504848--47505372	217	2.4	217	85	3	684	29	19	22	28	1.98
47505054--47505457	172	2.3	172	92	2	661	29	19	23	27	1.98
47504865--47505808	389	2.4	385	81	6	1032	29	20	22	27	1.98
47505472--47505882	88	4.7	88	74	9	279	29	21	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47506201--47506276	21	3.7	21	94	3	129	36	10	14	38	1.81
47506202--47506300	21	4.6	24	90	7	96	36	9	15	39	1.79
47506927--47506984	23	2.5	23	86	8	73	27	3	3	65	1.25
47508315--47508353	20	2.0	20	100	0	78	61	10	0	28	1.28
47508312--47508696	111	3.6	108	81	11	463	60	13	0	24	1.37
47508494--47508548	19	2.7	21	73	18	53	61	7	0	30	1.23
47508426--47508696	102	2.6	100	83	7	317	60	14	0	23	1.38
47508718--47508785	27	2.5	26	86	9	84	55	17	0	26	1.42
47521215--47521258	21	2.1	21	88	12	65	52	0	0	47	1.00
47521868--47521917	19	2.6	19	78	12	57	52	2	0	46	1.12
47531026--47531240	29	7.4	29	81	4	159	36	12	24	26	1.91
47531107--47531284	86	2.1	87	88	3	243	37	14	25	23	1.93
47531136--47531284	29	5.2	28	75	12	124	37	15	25	21	1.93
47531136--47531302	58	2.9	57	74	15	137	37	14	25	22	1.92
47531222--47531371	30	5.1	30	78	2	101	34	13	24	27	1.93
47531189--47531371	29	6.3	30	77	1	133	34	14	25	26	1.94
47540859--47540910	19	2.6	20	81	6	52	46	0	1	51	1.12
47542472--47542583	42	2.7	42	88	1	163	20	36	21	21	1.95
47542619--47542739	42	2.9	42	83	2	145	20	37	19	22	1.95
47542478--47542780	146	2.1	146	89	0	471	23	32	20	24	1.98
47544121--47544164	8	5.0	9	78	15	56	2	43	2	52	1.26
47547964--47548516	114	4.9	113	85	2	635	28	19	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47548441--47548587	72	2.0	73	88	1	215	27	23	23	25	2.00
47548486--47548950	113	4.1	114	86	4	623	26	20	26	26	1.99
47548189--47548819	302	2.1	300	82	3	757	27	20	24	27	1.99
47549207--47549251	16	2.8	16	86	3	63	20	0	44	35	1.51
47549220--47549275	22	2.5	24	80	11	73	19	0	46	33	1.50
47553051--47553322	43	6.3	43	86	2	350	18	21	30	29	1.97
47553386--47553427	22	1.9	22	90	0	66	40	28	21	9	1.84
47555225--47555250	13	2.0	13	100	0	52	15	38	7	38	1.76
47558317--47558351	18	2.0	17	94	5	61	57	0	0	42	0.99
47559159--47559201	16	2.6	17	89	10	63	44	0	0	55	0.99
47561398--47561483	29	3.2	29	70	29	98	27	38	12	20	1.90
47561463--47561499	16	2.2	17	90	9	58	32	40	10	16	1.83
47561497--47561521	11	2.3	11	100	0	50	40	28	8	24	1.83
47568453--47568854	206	2.0	206	84	3	531	21	21	30	26	1.98
47575772--47575824	18	2.9	18	85	0	52	77	7	1	13	1.06
47575772--47575812	6	6.8	6	94	0	64	78	4	0	17	0.93
47586077--47586194	40	3.0	40	85	4	161	39	18	17	23	1.92
47586254--47586373	41	2.9	41	91	1	195	20	20	30	27	1.98
47590045--47590325	23	12.3	23	72	13	179	29	6	23	40	1.80
47590145--47590299	45	3.4	45	71	5	141	27	5	23	43	1.75
47590119--47590324	91	2.3	91	93	0	349	28	6	24	40	1.79
47590910--47590935	11	2.4	11	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47590941--47591124	43	4.3	43	85	0	242	19	20	30	28	1.97
47591190--47591232	22	2.0	22	95	0	77	41	27	20	9	1.83
47592510--47592548	2	19.5	2	100	0	78	48	0	0	51	1.00
47595073--47595141	30	2.3	30	97	2	131	20	11	8	59	1.58
47596032--47596079	24	2.0	24	95	0	87	47	14	4	33	1.63
47597398--47597427	12	2.6	11	90	10	51	66	0	3	30	1.07
47599095--47599591	44	11.6	43	67	14	213	26	21	22	29	1.99
47599085--47599590	129	3.9	129	88	0	708	26	21	22	30	1.99
47599826--47600603	99	7.8	99	82	3	848	26	22	21	30	1.99
47599837--47600603	199	3.9	199	87	1	1092	26	22	20	30	1.99
47599836--47600575	50	14.9	50	63	6	212	26	22	21	30	1.98
47600898--47600955	24	2.4	24	79	0	71	29	24	12	34	1.91
47601820--47601871	7	7.0	7	78	20	52	0	13	3	82	0.80
47601823--47601862	18	2.2	18	90	0	62	0	15	2	82	0.77
47606890--47606934	23	2.0	23	82	8	56	33	4	11	51	1.58
47608585--47608638	26	2.0	27	92	7	92	22	11	18	48	1.79
47623636--47623691	15	3.7	15	78	0	58	21	7	30	41	1.80
47634049--47634103	25	2.2	25	86	0	74	16	1	18	63	1.39
47634135--47634174	20	2.0	20	95	0	71	27	15	27	30	1.96
47634140--47634184	20	2.2	20	84	0	54	26	17	28	26	1.98
47635162--47635231	22	2.9	25	66	20	67	52	15	7	24	1.67
47635724--47635761	3	12.7	3	94	0	67	2	31	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47638592--47638740	42	3.5	42	91	0	217	24	31	22	21	1.98
47638809--47638862	22	2.3	23	81	9	65	44	0	7	48	1.31
47638897--47638963	35	1.9	35	81	6	82	55	1	2	40	1.24
47643179--47643233	21	2.8	21	83	8	71	56	16	14	12	1.68
47643385--47643423	21	1.9	21	94	5	71	53	25	0	20	1.45
47643433--47643481	21	2.3	21	78	0	62	42	36	0	20	1.52
47643463--47643511	15	3.4	15	83	8	66	46	34	0	18	1.49
47643896--47644132	41	5.8	41	91	2	361	26	31	23	18	1.98
47644197--47644297	40	2.6	40	83	9	127	22	25	19	31	1.98
47645414--47645452	20	2.0	20	84	0	51	76	0	15	7	0.99
47652150--47652335	44	4.1	44	72	15	153	31	18	20	28	1.97
47652065--47652292	94	2.4	94	87	1	323	30	17	21	30	1.96
47652100--47652248	50	3.1	49	68	21	125	28	17	23	30	1.97
47652215--47652542	138	2.4	137	83	2	417	35	18	18	28	1.94
47652735--47652882	44	3.2	44	66	19	104	36	16	19	27	1.94
47652302--47652894	232	2.6	231	80	3	636	34	17	20	28	1.95
47652680--47652952	94	2.9	95	79	4	304	34	17	21	26	1.96
47654105--47654190	37	2.3	37	95	0	154	20	20	24	33	1.97
47655847--47655872	13	2.0	13	100	0	52	46	0	0	53	1.00
47657514--47657561	14	3.0	16	82	17	64	52	2	2	43	1.24
47664356--47664727	42	9.0	42	82	9	419	31	20	25	23	1.98
47664442--47664661	78	2.7	78	87	6	309	31	20	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47665123--47665191	21	3.3	21	91	0	102	1	42	20	36	1.61
47672358--47672390	16	2.1	16	100	0	66	30	0	24	45	1.53
47672374--47673035	65	10.2	65	99	0	1290	39	0	11	48	1.40
47673996--47676525	89	28.4	89	99	0	5024	36	14	13	35	1.86
47677837--47677877	13	3.1	14	82	6	50	46	24	7	21	1.77
47683772--47683842	35	2.0	35	97	0	133	59	16	9	14	1.61
47688515--47688778	27	9.8	27	81	6	322	35	15	17	31	1.91
47688515--47688778	54	4.9	54	84	5	356	35	15	17	31	1.91
47688515--47688776	108	2.4	108	91	1	429	35	14	17	32	1.91
47695516--47695555	21	1.9	21	89	0	62	77	2	0	20	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135