genome.fa.s8.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  22  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8876091--8876116	3	8.7	3	100	0	52	65	0	34	0	0.93
8879667--8879691	5	5.0	5	100	0	50	20	0	0	80	0.72
8884660--8885117	44	10.7	42	70	12	225	27	20	21	29	1.98
8884651--8885199	129	4.3	129	90	3	767	27	21	20	30	1.98
8884660--8885070	85	4.8	84	72	10	278	27	20	21	29	1.98
8884992--8885425	222	1.9	224	90	6	693	28	21	17	31	1.96
8885220--8885776	44	12.8	44	73	10	319	28	22	18	30	1.98
8885117--8885298	98	1.9	93	86	7	258	30	21	16	31	1.96
8885309--8885775	87	5.4	86	73	9	365	28	23	19	28	1.98
8884868--8885602	351	2.1	347	81	7	835	28	22	18	30	1.97
8887005--8887033	13	2.1	14	93	6	51	13	17	0	68	1.20
8887956--8887988	16	2.1	16	94	0	57	12	3	6	78	1.04
8887958--8888010	28	1.9	28	84	3	72	9	7	9	73	1.25
8887997--8888029	14	2.4	14	90	10	50	0	0	15	84	0.61
8892262--8892298	2	18.5	2	100	0	74	48	0	0	51	1.00
8892362--8892428	25	2.7	25	79	9	66	46	4	10	38	1.59
8892218--8892418	111	1.8	111	85	6	284	48	6	8	35	1.62
8892473--8892513	3	13.3	3	89	5	64	65	2	0	31	1.05
8897795--8897832	20	1.9	20	88	0	58	65	18	10	5	1.41
8898225--8898371	73	2.0	73	95	0	267	33	9	25	31	1.88
8902578--8902619	21	2.0	22	85	4	59	21	0	38	40	1.53
8902846--8902888	21	2.0	21	86	0	59	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8902846--8902888	10	4.1	10	79	8	50	39	0	2	58	1.11
8902652--8903068	222	1.9	223	86	1	595	36	10	9	43	1.72
8903312--8903360	25	2.0	25	83	0	62	61	0	8	30	1.25
8904444--8904659	103	2.1	103	94	0	378	16	18	15	50	1.79
8907641--8907683	18	2.4	18	84	0	59	41	2	39	16	1.61
8908967--8909200	41	5.7	41	94	0	387	21	29	20	27	1.98
8909319--8909499	64	2.9	63	88	6	244	41	17	8	33	1.79
8913109--8913167	18	3.3	18	82	0	64	16	32	3	47	1.64
8917194--8917249	27	2.0	28	86	3	78	64	1	0	33	1.04
8917208--8917299	10	9.4	10	69	19	52	67	3	3	26	1.21
8917233--8917288	20	2.8	20	84	10	69	66	1	5	26	1.23
8917203--8917256	28	2.0	27	85	3	72	66	3	1	27	1.19
8917231--8917299	10	6.5	11	73	5	54	66	2	4	26	1.24
8917231--8917299	21	3.3	20	83	6	75	66	2	4	26	1.24
8917475--8917523	19	2.6	19	80	6	55	26	10	0	63	1.26
8929847--8929898	2	26.0	2	100	0	104	0	0	50	50	1.00
8931212--8931295	27	3.1	27	82	0	96	35	16	25	22	1.95
8931278--8931350	27	2.7	26	79	8	76	32	10	30	26	1.90
8933981--8934071	45	2.0	45	91	0	146	31	23	17	27	1.97
8934073--8934211	51	2.7	50	78	3	152	32	26	15	25	1.96
8947927--8947994	31	2.2	31	86	5	93	22	38	17	22	1.93
8969421--8969499	31	2.6	32	80	8	92	45	8	3	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8976624--8976656	15	2.1	17	88	11	52	36	6	39	18	1.75
8988964--8989014	15	3.5	15	67	5	50	25	13	7	52	1.67
8989785--8989809	2	12.5	2	100	0	50	0	48	0	52	1.00
8989923--8989958	16	2.2	16	90	9	56	55	2	0	41	1.14
8989887--8990126	119	2.0	120	99	0	473	52	7	3	36	1.46
8990042--8990077	16	2.2	16	90	9	56	55	2	0	41	1.14
8993483--8993604	61	2.0	61	95	0	217	50	4	15	28	1.64
8995446--8995486	18	2.4	17	87	4	55	14	41	29	14	1.86
9000964--9001011	25	1.9	25	86	0	69	35	14	14	35	1.87
9002297--9002332	17	2.1	17	89	5	54	13	38	30	16	1.88
9009672--9009819	57	2.5	59	83	9	185	30	22	25	22	1.99
9009845--9009976	67	2.0	67	92	0	219	20	18	32	28	1.96
9018904--9018943	13	3.2	12	86	13	55	75	0	25	0	0.81
9018900--9018947	19	2.6	19	87	6	64	72	0	27	0	0.84
9018909--9018947	6	6.0	7	82	17	57	71	0	28	0	0.86
9018897--9018947	12	4.3	12	79	16	54	70	0	29	0	0.87
9022002--9022031	12	2.5	12	94	0	51	6	30	40	23	1.80
9033684--9033715	16	1.9	17	93	6	57	28	0	0	71	0.86
9034030--9034083	27	2.0	27	81	0	63	42	9	7	40	1.65
9034242--9034272	12	2.7	12	95	5	55	32	0	0	67	0.91
9040567--9040591	2	12.5	2	100	0	50	48	0	0	52	1.00
9043114--9043143	15	2.0	15	93	0	51	16	0	10	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9043828--9045291	107	13.6	107	98	0	2725	34	17	17	30	1.93
9046405--9046453	25	2.0	25	100	0	98	28	34	0	36	1.58
9049388--9049433	4	11.5	4	100	0	92	50	23	0	26	1.50
9057310--9057340	2	15.5	2	93	0	53	51	0	0	48	1.00
9057902--9057942	13	3.1	13	86	6	55	29	2	0	68	1.03
9057909--9057942	14	2.5	13	86	9	50	26	0	0	73	0.83
9060806--9060924	57	2.1	58	90	1	186	43	7	22	26	1.79
9062447--9062498	2	26.0	2	92	0	86	1	1	48	48	1.24
9063473--9063840	184	2.0	184	95	0	664	33	11	14	39	1.83
9065210--9065252	19	2.2	20	80	12	54	32	18	2	46	1.62
9069527--9069649	64	1.9	64	89	0	192	35	22	20	21	1.96
9072459--9072621	82	2.0	82	98	0	317	40	14	17	26	1.89
9074085--9074134	24	2.2	23	82	13	59	40	0	6	54	1.25
9075044--9075081	13	2.9	13	92	0	58	36	7	15	39	1.77
9080368--9080418	24	2.1	24	92	0	84	37	1	9	50	1.47
9082750--9082790	13	3.1	14	86	6	50	21	7	24	46	1.77
9082847--9082898	25	2.0	26	85	3	70	25	3	21	50	1.65
9085959--9086052	47	2.0	47	89	0	143	29	14	22	32	1.94
9086692--9086733	22	1.9	22	90	0	66	47	11	0	40	1.40
9086691--9086819	31	3.9	31	75	20	118	47	13	0	38	1.44
9086723--9086814	9	10.2	9	73	23	61	46	16	0	36	1.47
9086725--9086814	38	2.2	41	84	9	114	46	16	0	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9093665--9093862	87	2.3	87	85	5	267	39	16	31	12	1.85
9093831--9093870	21	1.9	21	89	0	62	37	12	42	7	1.71
9097935--9098215	43	6.7	41	87	4	364	23	20	26	29	1.99
9099185--9099216	2	16.0	2	100	0	64	50	0	0	50	1.00
9099752--9099798	18	2.6	18	86	3	58	70	0	0	29	0.88
9099753--9099805	18	2.8	18	75	16	54	69	0	0	30	0.88
9099966--9100018	18	2.8	19	73	21	58	66	1	0	32	1.03
9099938--9100023	27	3.2	26	80	11	75	65	3	2	29	1.22
9099948--9100033	27	3.1	26	76	14	84	65	2	3	29	1.22
9100407--9100437	16	1.9	16	100	0	62	77	0	0	22	0.77
9105128--9105191	31	2.0	32	93	3	112	37	18	10	32	1.86
9106812--9106851	21	1.9	21	89	0	62	0	60	0	40	0.97
9106814--9106851	11	3.5	11	85	7	51	0	57	0	42	0.98
9106845--9106887	18	2.4	18	88	0	59	9	13	6	69	1.35
9106887--9106996	55	2.0	55	92	0	184	35	11	15	37	1.84
9107435--9107491	27	2.1	28	86	3	80	40	7	7	45	1.58
9109166--9109212	16	3.0	15	79	14	51	74	6	6	12	1.20
9109310--9109350	16	2.5	17	80	11	50	80	7	0	12	0.90
9113756--9113782	11	2.5	11	100	0	54	22	7	18	51	1.70
9116577--9116674	45	2.2	44	83	5	126	35	27	4	32	1.76
9117625--9117653	14	2.1	14	100	0	58	31	0	0	68	0.89
9119353--9119550	46	4.3	46	95	0	342	33	14	23	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9120889--9120918	13	2.3	13	100	0	60	60	6	6	26	1.47
9121804--9121837	16	2.1	16	94	0	59	32	0	41	26	1.56
9123219--9123251	3	11.0	3	100	0	66	66	0	0	33	0.92
9123219--9123280	9	6.6	10	81	17	55	69	0	3	27	1.04
9127386--9127719	166	2.0	167	99	0	661	46	6	8	38	1.60
9136558--9136595	20	1.9	20	88	0	58	50	13	7	28	1.69
9136544--9136610	34	1.9	35	87	3	100	47	13	7	31	1.70
9151561--9151600	20	2.0	21	90	5	64	42	2	0	55	1.13
9157165--9157265	52	1.9	53	82	7	127	32	0	9	56	1.39
9158860--9158925	21	3.3	21	71	16	77	21	6	21	51	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135