genome.fa.s8.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  36  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14199190--14199247	2	29.0	2	100	0	116	50	0	50	0	1.00
14206495--14206622	35	3.6	35	74	6	114	37	34	13	14	1.86
14209335--14209413	38	2.1	38	100	0	158	34	13	5	46	1.66
14231338--14231389	21	2.5	21	83	0	68	32	50	13	3	1.60
14231524--14231594	25	2.7	28	77	16	80	42	1	4	52	1.29
14234557--14234823	125	2.2	125	82	4	346	30	17	16	35	1.92
14234882--14235011	34	3.8	34	80	7	147	40	16	2	40	1.62
14235035--14235097	33	1.9	33	86	0	90	44	20	1	33	1.61
14242249--14242273	12	2.1	12	100	0	50	56	16	8	20	1.65
14251695--14251825	37	3.5	37	77	10	142	16	14	32	36	1.89
14255337--14255384	16	2.9	16	80	14	53	60	0	2	37	1.09
14255773--14255818	17	2.7	17	82	0	56	39	0	0	60	0.97
14255813--14255867	29	2.0	26	86	10	74	34	5	0	60	1.20
14255834--14255878	20	2.3	19	80	3	54	37	4	0	57	1.19
14259853--14259910	29	2.0	29	89	0	89	10	39	13	36	1.79
14263662--14263724	13	4.9	13	86	7	85	39	23	7	28	1.83
14263665--14263724	25	2.3	26	86	8	88	41	25	8	25	1.83
14268878--14268914	9	4.1	9	89	0	56	43	13	13	29	1.82
14274246--14274280	12	2.8	13	91	8	56	74	0	5	20	1.02
14274245--14274295	4	12.2	4	76	15	50	70	0	3	25	1.04
14274473--14274503	12	2.5	13	94	5	55	74	0	6	19	1.03
14279622--14279671	24	2.1	25	81	7	59	8	10	10	72	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14279848--14279895	25	1.9	25	91	8	80	35	2	8	54	1.42
14294090--14294293	42	4.9	42	89	5	315	35	20	21	23	1.96
14294091--14294293	83	2.4	83	90	5	320	34	20	21	23	1.96
14306081--14306133	20	2.6	20	87	3	70	32	3	1	62	1.24
14306102--14306141	21	2.0	21	85	5	55	40	2	2	55	1.27
14306120--14306217	42	2.2	45	77	15	107	35	3	4	57	1.33
14306133--14306214	44	1.9	42	83	14	105	36	2	4	56	1.34
14306842--14306903	21	2.9	21	75	11	63	48	1	0	50	1.10
14309917--14310036	50	2.4	50	92	0	195	28	13	17	40	1.87
14314336--14314376	22	1.9	21	85	5	55	4	39	2	53	1.35
14319221--14319302	19	4.2	19	75	9	76	53	1	0	45	1.08
14332944--14333162	110	2.0	110	92	0	366	31	13	23	31	1.93
14336636--14336704	25	2.8	25	76	14	79	33	23	23	20	1.97
14336853--14336894	20	2.1	20	82	8	50	57	9	0	33	1.31
14344084--14344153	25	2.8	25	83	12	90	28	20	27	24	1.99
14349856--14349891	17	2.1	17	89	0	54	66	2	0	30	1.06
14354927--14354951	13	1.9	13	100	0	50	64	4	0	32	1.12
14354930--14354974	21	2.1	21	83	4	54	66	4	4	24	1.29
14357258--14357318	30	2.0	31	87	6	90	21	40	0	37	1.53
14357359--14357396	20	2.0	20	94	5	69	26	36	0	36	1.57
14372714--14372798	43	2.0	43	97	0	161	52	15	4	27	1.62
14372820--14372866	19	2.5	19	93	3	78	44	10	4	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14374303--14374349	24	2.0	24	83	8	60	17	29	0	53	1.44
14381269--14381302	16	2.2	15	89	5	50	35	0	2	61	1.11
14381528--14381567	3	13.3	3	100	0	80	32	0	0	67	0.91
14387365--14387392	2	14.0	2	100	0	56	50	0	0	50	1.00
14403395--14403443	24	2.0	24	92	0	80	46	10	8	34	1.67
14412000--14412026	14	1.9	14	100	0	54	92	0	7	0	0.38
14412611--14412652	23	1.9	21	90	9	66	0	7	4	88	0.64
14412614--14412651	21	1.9	20	89	10	60	0	7	2	89	0.57
14413842--14413990	48	3.1	48	65	16	135	37	5	12	44	1.64
14413793--14413990	97	2.0	98	99	0	389	38	6	9	46	1.60
14416098--14416125	7	4.0	7	100	0	56	0	14	0	85	0.59
14425390--14425434	20	2.3	19	81	7	54	46	2	0	51	1.13
14428972--14428996	8	3.1	8	100	0	50	64	0	0	36	0.94
14445670--14445698	7	4.1	7	100	0	58	58	0	41	0	0.98
14454430--14454456	13	2.1	13	100	0	54	29	44	11	14	1.80
14455386--14455494	32	3.5	31	70	14	91	47	10	2	39	1.52
14457688--14457730	20	2.2	20	95	0	77	34	0	0	65	0.93
14477284--14477318	16	2.1	17	89	5	54	40	5	5	48	1.51
14483846--14483928	34	2.4	34	81	0	94	49	8	9	32	1.66
14486610--14486842	116	2.0	117	99	0	459	48	11	5	35	1.61
14487168--14487229	25	2.3	27	86	8	83	50	4	4	40	1.45
14487453--14487485	3	11.0	3	93	0	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14490595--14490620	1	26.0	1	100	0	52	0	0	0	100	0.00
14498345--14498383	19	2.1	19	100	0	78	20	10	20	48	1.78
14528378--14528417	17	2.3	18	95	4	73	27	12	0	60	1.33
14530778--14530815	17	2.1	19	85	9	53	55	0	5	39	1.23
14549912--14549936	9	2.8	9	100	0	50	24	36	20	20	1.95
14552840--14552874	15	2.2	16	90	5	54	0	34	11	54	1.37
14572935--14573004	27	2.6	27	90	4	106	41	12	1	44	1.52
14573082--14573157	27	2.8	27	93	0	125	26	28	28	15	1.96
14580488--14580526	20	2.0	21	85	10	55	66	7	0	25	1.18
14580649--14580724	27	2.8	27	85	0	107	15	28	28	26	1.96
14580766--14580805	18	2.2	18	86	4	53	12	0	17	70	1.18
14580794--14580866	28	2.6	28	88	2	101	47	1	10	39	1.47
14580901--14581356	228	2.0	228	100	0	912	38	22	19	19	1.93
14590304--14590407	26	4.2	26	64	14	65	28	6	13	50	1.66
14590295--14590444	74	2.0	75	97	2	284	29	7	12	51	1.66
14595060--14595099	20	2.0	20	85	0	53	45	15	10	30	1.78
14602584--14602653	31	2.2	32	94	5	124	48	15	10	25	1.76
14605888--14605950	31	2.0	31	100	0	126	46	25	0	28	1.53
14607654--14607766	57	2.0	57	89	3	174	30	21	25	23	1.99
14609005--14609041	18	2.1	17	90	5	56	35	8	0	56	1.29
14609102--14609133	16	2.0	16	93	0	55	46	0	0	53	1.00
14609738--14610021	132	2.1	133	89	0	426	26	28	7	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14617265--14617335	27	2.6	27	84	4	99	23	33	32	9	1.88
14617367--14617400	3	11.3	3	93	0	59	61	0	38	0	0.96
14617656--14617802	39	3.8	40	66	18	96	29	4	14	51	1.63
14621307--14622071	157	4.9	153	88	5	1042	31	9	8	50	1.66
14622005--14622040	16	2.1	18	90	10	58	22	5	5	66	1.34
14622452--14622478	13	2.1	13	100	0	54	0	37	0	62	0.95
14629037--14629066	16	1.9	16	93	6	53	56	0	10	33	1.32
14630628--14630681	26	2.0	27	89	10	85	46	0	5	48	1.25
14634525--14634664	66	2.1	66	94	0	253	46	13	12	27	1.79
14635728--14635821	33	2.8	34	79	9	93	32	14	25	26	1.95
14635764--14635839	33	2.3	32	77	6	80	32	18	23	25	1.97
14635868--14635944	33	2.3	32	82	6	91	33	14	23	28	1.94
14635763--14635956	105	1.8	105	84	2	264	31	16	25	25	1.96
14643007--14643045	11	3.5	11	82	6	51	35	2	0	61	1.10
14646221--14646278	3	19.3	3	83	13	75	34	3	0	62	1.12
14646221--14646275	24	2.3	24	90	6	85	34	3	0	61	1.13
14646221--14646288	27	2.7	25	76	10	75	38	2	0	58	1.13
14646308--14646382	33	2.3	35	82	15	97	29	1	0	69	0.97
14650808--14650913	1	106.0	1	67	0	59	83	7	7	0	0.84
14650808--14650913	9	11.8	9	81	15	89	83	7	7	0	0.84
14650808--14650914	17	6.0	17	78	15	101	83	8	7	0	0.86
14653354--14653708	87	4.1	87	64	17	187	25	19	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14653516--14653696	44	4.2	44	66	17	117	24	20	24	30	1.98
14653287--14653740	131	3.5	131	94	1	811	25	19	24	30	1.98
14655162--14655219	3	19.3	3	79	13	66	32	3	0	63	1.11
14655162--14655216	24	2.3	24	87	6	76	32	3	0	63	1.12
14677409--14677444	18	2.0	18	88	0	54	47	19	11	22	1.80
14677435--14677469	17	2.1	17	94	0	61	31	11	14	42	1.81
14684718--14684750	12	2.6	13	85	9	50	54	0	0	45	0.99
14695039--14695114	24	3.1	24	75	5	73	34	18	26	21	1.96
14695840--14695883	19	2.2	20	88	4	63	36	18	4	40	1.71
14709282--14709491	81	2.7	78	79	4	249	24	10	35	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135