genome.fa.s8.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  35  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13876155--13876199	20	2.2	20	92	0	72	20	11	24	44	1.83
13877902--13877943	5	8.4	5	100	0	84	40	59	0	0	0.97
13877992--13878035	6	6.8	6	82	12	52	61	15	2	20	1.45
13877984--13878034	14	3.8	14	79	10	61	64	11	1	21	1.36
13877984--13878034	20	2.5	21	81	15	63	64	11	1	21	1.36
13877984--13878035	26	2.0	26	88	0	77	63	13	1	21	1.39
13881968--13882000	9	3.7	9	91	0	57	24	6	18	51	1.68
13882263--13882449	93	2.0	94	96	3	351	40	6	3	49	1.44
13882290--13882479	93	2.0	92	85	6	249	43	6	3	47	1.44
13887182--13887366	25	7.4	25	74	7	142	37	18	24	18	1.94
13887197--13887336	75	1.9	75	83	3	174	37	17	25	18	1.93
13887238--13887374	50	2.7	50	87	2	186	37	18	26	18	1.93
13887228--13887376	75	2.0	75	81	9	178	37	17	26	18	1.93
13893357--13893503	75	2.0	75	82	5	181	37	19	23	19	1.94
13893395--13893559	75	2.2	75	83	7	210	38	17	26	18	1.92
13893390--13893561	25	6.9	25	81	5	186	37	17	26	18	1.93
13902250--13902339	3	30.0	3	79	10	87	60	3	4	32	1.33
13904278--13904314	5	7.4	5	100	0	74	59	0	0	40	0.97
13923813--13923993	89	2.0	90	98	1	355	41	17	4	36	1.70
13928113--13928139	13	2.1	13	100	0	54	55	7	0	37	1.28
13928224--13928459	97	2.4	97	100	0	472	40	13	8	37	1.75
13928497--13928541	23	2.0	23	82	8	56	44	6	2	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13931540--13931575	16	2.2	16	95	0	63	38	33	0	27	1.57
13933141--13933192	26	2.0	26	100	0	104	34	3	30	30	1.76
13936665--13936706	17	2.6	16	85	7	57	52	23	0	23	1.47
13941236--13941277	19	2.2	19	87	8	59	71	2	0	26	0.98
13941621--13941668	24	2.0	24	100	0	96	20	20	4	54	1.61
13942784--13942825	19	2.2	19	83	8	50	38	16	2	42	1.61
13943437--13943468	16	2.1	16	94	5	57	12	50	0	37	1.41
13943544--13943583	14	2.5	17	73	23	50	20	55	12	12	1.69
13945611--13945658	24	2.0	24	95	0	87	33	6	10	50	1.62
13954528--13954563	17	2.2	17	90	5	56	44	8	0	47	1.33
13959075--13959138	15	4.5	14	80	7	58	25	23	25	26	2.00
13959086--13959127	15	2.9	15	89	3	59	26	23	21	28	1.99
13961047--13961085	15	2.6	15	88	8	53	25	10	28	35	1.89
13961153--13961235	16	5.4	16	74	7	64	20	18	38	22	1.93
13961194--13961237	15	2.8	16	79	3	54	25	20	34	20	1.97
13962729--13962761	16	2.0	17	88	5	50	33	3	3	60	1.27
13967542--13967697	79	2.0	77	89	2	240	28	14	8	47	1.75
13979292--13979390	49	2.0	50	96	4	182	56	10	5	28	1.53
13980734--13980759	11	2.4	11	100	0	52	0	7	0	92	0.39
13986277--13986431	43	3.7	43	76	10	167	28	27	19	25	1.99
13986277--13986385	41	2.6	43	84	5	134	29	25	19	25	1.98
13986277--13986432	84	1.9	84	85	10	221	28	27	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13987585--13987613	14	2.0	15	93	6	51	51	20	0	27	1.47
13993773--13993847	26	2.8	26	82	6	80	29	20	10	40	1.86
14005118--14005178	32	1.9	32	100	0	122	32	13	21	32	1.91
14008372--14008473	37	2.7	37	84	1	123	30	22	10	36	1.88
14009486--14009512	11	2.5	11	100	0	54	77	0	0	22	0.76
14011936--14011995	30	2.0	31	83	9	79	41	0	38	20	1.52
14018263--14018308	22	2.1	22	95	0	83	15	17	19	47	1.82
14024444--14024487	19	2.3	19	84	7	63	18	0	0	81	0.68
14035918--14036147	114	2.0	114	95	1	415	29	10	10	50	1.69
14036313--14036417	20	5.2	20	69	21	60	18	32	18	31	1.94
14036290--14036420	40	3.3	40	82	4	131	16	30	19	33	1.94
14037267--14037374	33	3.3	33	100	0	216	17	11	25	45	1.82
14041239--14041531	67	4.4	65	79	4	253	36	16	23	23	1.94
14041239--14041531	134	2.2	134	83	1	354	36	16	23	23	1.94
14041239--14041572	134	2.5	134	81	2	321	36	16	23	23	1.94
14045186--14045237	21	2.4	22	75	12	54	46	1	0	51	1.12
14045155--14045272	62	1.9	59	86	5	164	47	4	2	45	1.35
14051500--14051544	24	1.9	23	81	4	54	46	11	17	24	1.81
14058754--14058797	21	2.1	21	82	0	52	29	4	4	61	1.36
14059004--14059045	22	1.9	22	85	9	59	50	16	2	30	1.58
14071921--14071958	2	19.0	2	100	0	76	50	0	0	50	1.00
14072685--14072740	28	2.0	28	82	0	67	33	17	26	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14074561--14074597	18	2.0	19	89	5	58	27	5	5	62	1.39
14076035--14076261	43	5.3	43	80	3	226	25	29	18	25	1.98
14076035--14076273	86	2.8	86	82	3	252	26	29	17	26	1.98
14076101--14076273	85	2.0	84	84	3	222	27	28	16	27	1.97
14076529--14076612	43	2.0	43	82	0	105	42	11	13	32	1.80
14079069--14079106	3	12.7	3	100	0	76	31	0	0	68	0.90
14079803--14079855	21	2.6	21	84	3	72	33	0	41	24	1.55
14080752--14080792	21	2.0	21	85	4	57	39	36	0	24	1.56
14080603--14081209	311	2.0	302	89	5	931	41	28	2	27	1.71
14081026--14081071	7	6.4	7	80	5	56	34	45	2	17	1.61
14081026--14081064	15	2.7	15	88	4	53	35	43	2	17	1.63
14081090--14081138	14	3.4	14	83	5	62	38	34	0	26	1.57
14081090--14081136	15	3.3	15	85	5	62	40	31	0	27	1.57
14081343--14081397	25	2.2	25	75	12	60	21	9	7	61	1.50
14081481--14081799	41	7.8	41	81	0	350	33	27	16	22	1.95
14081481--14081799	123	2.6	122	84	2	386	33	27	16	22	1.95
14081838--14081916	39	2.0	40	87	2	115	22	21	20	35	1.96
14085228--14085347	36	3.4	35	82	4	134	13	11	34	40	1.81
14085947--14085991	23	2.0	22	82	4	54	37	6	20	35	1.79
14094606--14094654	18	2.6	18	83	6	62	48	2	4	44	1.33
14098634--14098786	36	4.3	36	89	1	146	11	11	37	38	1.79
14098662--14098789	36	3.6	36	95	1	231	11	10	39	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14099368--14099551	92	2.0	92	97	0	350	25	5	24	44	1.76
14113731--14113798	30	2.2	31	89	2	102	47	2	5	44	1.42
14128341--14128890	44	12.3	43	71	13	217	32	18	20	28	1.96
14128341--14128752	137	3.0	135	83	3	490	31	19	21	27	1.97
14128401--14128846	88	5.0	88	76	7	380	32	18	20	28	1.96
14128401--14128835	132	3.3	132	82	3	444	31	18	20	28	1.97
14133924--14133962	20	1.9	20	84	5	51	46	7	10	35	1.67
14142717--14142749	17	1.9	18	88	11	52	45	0	12	42	1.41
14144271--14144397	62	2.0	62	96	0	236	27	21	22	28	1.99
14146155--14146240	39	2.2	40	95	2	156	63	3	8	24	1.37
14148097--14148130	15	2.3	15	94	0	59	64	17	0	17	1.29
14148137--14148174	13	2.8	14	80	19	53	65	7	5	21	1.38
14149852--14149977	63	2.0	63	96	0	234	30	17	7	43	1.78
14152221--14152618	195	2.0	197	93	3	674	35	20	3	40	1.70
14156707--14156779	14	5.7	13	75	18	55	46	1	4	47	1.30
14156715--14156782	12	5.4	12	74	20	50	44	1	4	50	1.31
14156740--14156783	21	2.1	21	82	0	52	38	0	4	56	1.20
14161202--14161262	28	2.1	30	82	11	74	22	0	18	59	1.38
14162161--14162333	45	3.9	44	78	6	147	43	13	21	21	1.87
14162170--14162333	44	3.7	44	79	7	154	42	14	20	22	1.88
14177441--14177470	14	2.2	13	94	5	51	33	26	0	40	1.57
14177866--14178029	86	1.9	86	87	2	240	36	21	9	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14178491--14178687	91	2.2	89	88	2	288	31	11	20	36	1.88
14179442--14179495	23	2.4	23	81	3	74	55	9	3	31	1.49
14179708--14179758	21	2.4	22	80	6	70	54	7	3	33	1.47
14179357--14179885	263	2.0	265	96	1	990	41	10	15	32	1.81
14183152--14183209	19	3.1	19	74	16	57	31	1	0	67	1.01
14183755--14183793	20	2.1	18	85	9	51	33	7	0	58	1.26
14189144--14189356	106	2.0	107	99	0	419	43	9	3	43	1.54
14189186--14189349	52	3.1	52	66	13	154	43	8	3	45	1.50
14197057--14197110	24	2.2	24	83	9	65	42	0	7	50	1.30
14197467--14197506	13	3.2	13	85	3	55	70	2	2	25	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135