Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr9 Parameters: 2 7 7 80 10 50 1000 Length: 48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  58  of  135  ( 16172 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23697561--23697609
25
2.0
25
84
8
64
12
18
20
48
1.79
23698116--23698264
67
2.2
67
93
0
262
52
7
10
30
1.62
23698239--23698264
12
2.2
12
100
0
52
57
11
7
23
1.59
23700295--23700399
49
2.1
49
85
0
138
31
7
10
50
1.65
23701934--23702022
46
2.0
46
86
4
128
40
23
4
31
1.75
23702011--23702055
16
2.8
16
93
0
72
20
26
4
48
1.68
23712860--23712954
47
2.0
47
100
0
190
23
18
23
34
1.96
23713525--23713551
5
5.4
5
100
0
54
37
0
22
40
1.54
23717037--23717074
17
2.2
18
85
4
51
31
2
2
63
1.22
23717201--23717231
14
2.2
14
94
0
53
22
0
3
74
0.96
23727284--23727336
26
2.0
26
89
7
81
39
7
16
35
1.78
23730763--23730787
2
12.5
2
100
0
50
52
0
0
48
1.00
23741756--23741820
22
2.9
22
79
2
67
36
4
32
26
1.77
23743325--23743368
16
2.8
16
78
0
52
45
0
2
52
1.13
23743357--23743408
19
2.7
20
82
11
63
38
0
3
57
1.17
23743391--23743601
101
2.1
102
99
0
415
35
10
8
45
1.69
23760908--23760934
7
3.9
7
100
0
54
59
0
0
40
0.98
23768291--23768391
2
50.0
2
98
2
193
49
0
0
49
1.07
23768642--23768769
64
2.0
64
93
0
220
38
2
22
36
1.67
23779278--23779563
149
1.9
150
87
5
418
41
3
10
44
1.56
23783450--23783494
22
2.0
22
100
0
90
42
13
13
31
1.82
23788822--23788870
21
2.3
21
92
3
80
24
4
32
38
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23788833--23788878
21
2.2
21
84
0
56
26
6
32
34
1.82
23788843--23788928
35
2.5
35
92
5
140
27
5
31
34
1.81
23790629--23790671
22
2.0
22
100
0
86
51
23
6
18
1.70
23791709--23791777
31
2.2
31
82
5
77
36
0
4
59
1.17
23791739--23791785
20
2.3
20
82
7
60
29
0
6
63
1.19
23792970--23793008
3
13.0
3
100
0
78
66
0
33
0
0.92
23806775--23807089
44
7.2
44
63
13
128
31
20
23
25
1.98
23806654--23807172
132
3.9
132
93
0
833
31
21
23
23
1.98
23811623--23811653
9
3.4
9
90
0
53
25
12
22
38
1.90
23819124--23819185
16
3.9
16
74
17
58
46
0
0
53
1.00
23819124--23819172
15
3.1
17
77
14
59
46
0
0
53
1.00
23819123--23819189
31
2.2
30
80
15
75
47
0
0
52
1.00
23832035--23832315
142
2.0
142
95
0
508
37
21
4
36
1.75
23844474--23844528
27
2.0
28
83
13
71
50
3
7
38
1.48
23845185--23845220
11
3.3
11
92
0
54
86
0
8
5
0.72
23848091--23848338
136
1.8
136
99
0
487
27
4
12
55
1.58
23857219--23857261
14
3.0
14
86
6
59
81
4
13
0
0.84
23857219--23857262
15
3.0
15
86
3
54
81
4
13
0
0.83
23858152--23859043
50
17.9
50
69
3
508
31
22
20
25
1.98
23858152--23858444
99
2.9
100
81
3
277
32
23
19
25
1.97
23858181--23858709
249
2.1
249
90
0
824
31
22
19
27
1.98
23858463--23859119
99
6.6
100
84
1
802
30
22
21
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23858463--23859119
199
3.3
199
86
3
883
30
22
21
25
1.98
23858181--23858787
249
2.4
249
85
0
730
31
22
19
26
1.98
23858482--23859119
298
2.1
298
87
1
902
30
22
21
25
1.99
23859125--23859944
44
19.0
42
70
12
350
32
21
20
25
1.97
23859126--23859677
129
4.3
128
91
2
849
31
23
21
24
1.98
23859320--23859785
173
2.7
170
80
8
444
32
22
20
24
1.98
23859126--23859629
257
2.0
257
92
1
850
31
23
21
24
1.98
23859171--23859806
129
5.0
127
81
9
403
32
22
20
24
1.98
23859598--23859838
124
1.9
128
84
7
323
34
21
18
26
1.96
23860599--23860657
24
2.4
25
75
13
68
11
10
3
74
1.18
23861405--23861431
2
13.5
2
100
0
54
48
0
0
51
1.00
23861912--23861948
19
2.0
19
89
5
58
18
2
5
72
1.15
23861979--23862034
20
2.8
20
71
7
51
25
1
7
66
1.27
23863025--23863062
19
2.1
18
85
9
51
42
7
0
50
1.31
23864603--23864651
25
1.9
26
84
12
66
42
4
2
51
1.32
23871357--23871389
17
1.9
17
93
0
57
15
6
12
66
1.42
23873403--23873878
233
2.0
235
91
5
762
36
13
13
36
1.83
23874259--23874289
14
2.2
14
94
0
53
29
19
12
38
1.89
23875801--23875851
26
2.0
26
96
0
93
78
7
7
5
1.09
23877977--23878016
19
2.1
19
90
0
62
30
20
0
50
1.49
23878204--23878394
45
4.2
45
90
1
267
41
19
18
20
1.91
23878597--23878678
40
2.0
40
83
4
103
40
20
7
31
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23881043--23881417
187
2.0
188
98
0
734
24
19
17
38
1.93
23886988--23887043
20
2.8
20
83
0
76
44
3
7
44
1.48
23886988--23887050
20
3.2
19
82
8
72
41
3
9
46
1.52
23888545--23888584
13
2.6
16
74
25
50
65
0
0
35
0.93
23900968--23900992
3
8.3
3
100
0
50
64
0
0
36
0.94
23903443--23903494
22
2.4
23
81
12
65
40
0
30
28
1.57
23903438--23903495
22
2.8
20
78
7
62
36
1
29
32
1.68
23917569--23917625
21
2.7
21
78
7
62
19
21
14
45
1.85
23917591--23917641
21
2.4
21
83
6
59
21
19
11
47
1.81
23917631--23917719
42
2.1
42
85
4
117
13
21
20
44
1.85
23920454--23920537
25
3.2
25
67
18
71
52
13
5
28
1.63
23920410--23920547
54
2.5
54
91
1
222
52
13
5
28
1.61
23920524--23920571
24
2.0
24
95
0
87
50
10
6
33
1.62
23921080--23921124
5
9.0
5
97
0
81
60
2
0
37
1.09
23925599--23925881
140
2.0
141
90
6
446
31
19
21
28
1.97
23926488--23926526
18
2.3
16
86
8
51
28
5
0
66
1.12
23926643--23926681
18
2.3
16
86
8
51
28
5
0
66
1.12
23926277--23926681
155
2.6
156
94
1
690
29
10
7
52
1.63
23926898--23926947
14
3.7
14
75
20
52
26
0
8
66
1.19
23946082--23946154
36
2.0
36
100
0
146
43
19
16
20
1.88
23949187--23949389
104
2.0
101
83
2
253
33
17
21
27
1.96
23949288--23949527
125
1.9
126
88
1
365
30
18
22
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23952738--23953926
22
53.9
22
72
14
669
23
1
30
45
1.60
23952733--23953926
65
18.4
65
80
9
1004
23
1
30
45
1.60
23952867--23952972
53
2.0
55
81
7
128
20
1
31
46
1.62
23952937--23952969
15
2.3
15
89
5
50
18
0
36
45
1.49
23953261--23953411
80
1.9
80
87
2
223
23
1
28
46
1.61
23953479--23953603
37
3.2
37
77
16
135
21
0
32
44
1.58
23953444--23953603
80
2.0
80
91
1
259
22
1
32
43
1.61
23956441--23956484
11
3.8
12
80
19
58
43
0
31
25
1.55
23962425--23962510
25
3.5
24
81
9
84
27
12
30
29
1.93
23965150--23965189
21
1.9
21
89
0
62
25
15
10
50
1.74
23967497--23967594
27
3.6
28
72
9
78
36
19
25
18
1.94
23984131--23984198
30
2.2
31
86
2
93
41
0
5
52
1.25
23988415--23988658
121
2.0
122
99
0
481
30
4
7
57
1.47
23998090--23998126
9
4.1
9
92
0
65
45
13
10
29
1.77
24004824--24004876
21
2.5
21
75
0
52
16
7
30
45
1.75
24005573--24005610
20
2.0
20
94
5
69
36
0
0
63
0.95
24005549--24005635
20
4.3
20
76
19
67
43
0
1
55
1.07
24005570--24005635
19
3.2
21
81
12
66
43
0
1
54
1.09
24025796--24025835
11
3.5
11
83
12
53
45
2
2
50
1.28
24027961--24028008
13
3.7
13
78
8
53
33
0
2
64
1.05
24027960--24028011
14
3.9
14
80
7
54
34
0
1
63
1.06
24034267--24034537
143
1.9
143
89
0
425
19
16
21
42
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24039210--24039280
3
24.7
3
74
8
67
30
2
4
61
1.29
24040073--24040395
107
3.0
106
93
1
538
30
17
18
34
1.94
24044406--24044505
19
4.8
20
73
13
76
41
0
6
53
1.26
24044478--24044517
11
3.5
11
89
3
53
27
0
5
67
1.11
24046444--24046562
25
4.8
25
72
6
82
31
20
26
21
1.98
24046506--24046587
25
3.3
24
75
11
85
35
21
25
17
1.95
24048185--24048212
8
3.5
8
100
0
56
42
0
28
28
1.56
24048648--24048791
64
2.2
64
92
0
243
32
11
16
38
1.85
24048648--24048808
32
5.0
32
81
3
182
32
11
16
40
1.83
24048648--24048808
64
2.5
64
82
6
202
32
11
16
40
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135