genome.fa.s8.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  78  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30739317--30739855	113	4.8	112	74	8	394	30	19	23	26	1.98
30739408--30740064	340	1.9	340	81	5	799	30	19	22	27	1.98
30739768--30739983	112	1.9	115	79	2	249	31	18	22	27	1.97
30740158--30746089	90	65.9	90	99	0	11839	27	3	25	43	1.70
30747032--30747259	42	5.4	42	86	2	269	25	21	21	30	1.98
30750281--30750408	24	5.3	24	98	0	238	41	14	35	8	1.76
30758599--30758783	101	1.8	101	84	3	255	31	26	17	24	1.97
30777390--30777424	16	2.1	17	89	5	54	28	0	0	71	0.86
30778066--30778105	20	2.0	20	86	13	57	20	10	7	62	1.50
30778638--30778699	30	2.0	31	84	3	81	24	22	20	32	1.98
30784678--30784721	18	2.4	19	88	11	74	65	0	6	27	1.17
30790060--30790130	22	3.2	22	77	15	74	2	22	4	70	1.18
30790108--30790141	18	1.9	17	88	5	50	11	14	2	70	1.27
30792537--30792599	25	2.5	25	80	10	74	31	22	22	23	1.98
30792774--30792817	22	2.0	23	86	4	63	54	9	0	36	1.32
30805720--30806014	139	2.1	139	96	2	549	29	4	9	56	1.51
30823686--30823739	27	2.0	27	82	10	67	64	3	31	0	1.11
30824487--30824538	17	3.1	17	88	2	79	38	1	21	38	1.64
30835234--30835394	33	4.8	32	69	11	117	28	26	15	29	1.96
30835029--30835628	101	5.9	101	85	2	756	29	23	15	31	1.95
30835029--30835596	202	2.8	203	91	2	899	29	23	15	31	1.95
30836559--30836591	16	2.0	17	88	5	50	27	12	12	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30837019--30837060	21	2.0	21	81	9	50	73	2	4	19	1.12
30840145--30840229	42	2.0	42	81	0	98	22	23	23	30	1.99
30853273--30853313	18	2.4	17	79	4	55	29	34	9	26	1.88
30857479--30857515	19	1.9	19	89	10	58	48	0	5	45	1.25
30857473--30857518	23	2.0	22	84	12	58	47	0	6	45	1.28
30861811--30861861	24	2.1	24	85	0	66	25	19	5	49	1.71
30861881--30862024	33	4.3	33	69	13	105	28	21	15	34	1.94
30861864--30862093	101	2.3	101	94	0	397	29	22	15	32	1.95
30864071--30864356	42	6.8	42	86	3	346	33	19	21	25	1.97
30864785--30864829	21	2.1	21	83	0	54	6	42	17	33	1.76
30865725--30865767	19	2.2	19	91	4	68	39	2	11	46	1.53
30865828--30865878	25	2.0	25	96	0	93	37	1	15	45	1.58
30865875--30865908	17	1.9	18	94	5	61	52	0	5	41	1.25
30865944--30865987	19	2.3	19	96	0	79	40	0	11	47	1.39
30865951--30865995	19	2.3	19	92	3	72	42	2	11	44	1.52
30866056--30866106	25	2.0	25	96	0	93	37	1	15	45	1.58
30865706--30866246	228	2.4	228	98	0	1046	40	1	13	45	1.52
30866172--30866215	19	2.3	19	96	0	79	40	0	11	47	1.39
30866179--30866223	19	2.3	19	92	3	72	42	2	11	44	1.52
30867341--30867386	22	2.1	22	95	0	83	43	13	4	39	1.63
30869200--30869250	21	2.4	21	86	0	75	33	43	0	23	1.54
30869242--30869303	7	8.9	7	81	0	61	38	37	1	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30869224--30869299	35	2.2	35	82	0	89	38	35	1	25	1.64
30872750--30872903	70	2.2	70	92	0	254	30	9	25	33	1.88
30874972--30875009	14	2.6	15	91	4	60	42	0	2	55	1.14
30888613--30888657	23	2.0	23	82	8	56	20	15	6	57	1.60
30891707--30891762	21	2.7	21	94	0	94	16	7	19	57	1.62
30891707--30891773	21	3.2	20	83	6	73	14	7	17	59	1.58
30893199--30893254	24	2.3	24	93	0	94	39	1	0	58	1.08
30893851--30893876	3	8.7	3	100	0	52	30	0	0	69	0.89
30895863--30895912	5	10.2	5	76	20	52	60	2	0	38	1.09
30899184--30899214	9	3.4	9	90	0	53	25	12	22	38	1.90
30899269--30899305	9	4.1	9	92	0	65	45	13	10	29	1.77
30900358--30900383	5	5.2	5	100	0	52	19	19	19	42	1.90
30927900--30927944	23	2.0	23	100	0	90	33	26	22	17	1.96
30928032--30928060	8	3.6	8	100	0	58	34	27	13	24	1.93
30930037--30930078	23	1.9	22	85	9	59	26	0	4	69	1.08
30939413--30939450	18	2.1	18	85	9	51	63	0	7	28	1.23
30940054--30940139	31	2.8	30	75	1	82	44	12	6	36	1.70
30942092--30942125	8	4.1	8	96	3	59	50	0	0	50	1.00
30942091--30942166	9	8.8	9	72	20	56	42	0	1	56	1.07
30951976--30952307	101	3.3	101	96	0	585	27	24	16	31	1.96
30954645--30954729	45	1.9	44	83	9	111	31	5	11	50	1.63
30955144--30955172	11	2.6	11	100	0	58	17	17	27	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30955269--30955322	20	2.7	20	83	13	67	55	5	1	37	1.34
30958583--30958617	18	1.9	18	88	11	54	37	0	2	60	1.12
30958701--30958762	27	2.3	27	97	0	115	29	22	33	14	1.94
30958925--30958968	21	2.1	21	91	4	72	70	0	2	27	0.99
30959568--30959644	27	2.9	28	90	3	115	19	38	24	16	1.92
30966711--30966742	16	2.0	16	93	0	55	34	0	0	65	0.93
30969850--30969915	24	2.9	24	71	22	61	37	6	6	50	1.52
30969854--30970064	101	2.1	102	92	3	354	39	5	7	47	1.54
30969961--30970007	24	2.0	23	87	4	67	36	6	8	48	1.59
30974299--30974328	14	2.1	15	93	6	53	76	0	16	6	0.99
30974299--30974329	15	2.1	15	93	0	53	77	0	16	6	0.97
30977199--30977286	27	3.2	27	75	9	88	36	6	5	51	1.52
30977332--30977357	10	2.6	10	100	0	52	19	0	0	80	0.71
30978502--30983247	82	57.9	82	99	0	9483	25	15	23	35	1.94
30983862--30984036	50	3.5	50	72	6	174	29	20	25	24	1.99
30983808--30984055	100	2.5	100	95	0	433	29	20	24	25	1.99
30986438--30986510	27	2.7	26	81	8	83	35	8	6	49	1.59
30986653--30986865	106	2.0	107	99	0	419	17	11	10	60	1.58
31001074--31001114	11	3.2	13	76	16	50	29	0	2	68	1.03
31003327--31003383	23	2.5	23	83	11	64	38	0	7	54	1.28
31004292--31004324	17	1.9	17	100	0	66	27	12	36	24	1.91
31006447--31006564	34	3.5	34	81	8	152	43	10	7	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31007095--31007127	17	1.9	17	100	0	66	42	12	0	45	1.41
31009782--31009836	4	13.8	4	92	0	92	54	21	0	23	1.45
31009834--31009893	2	30.0	2	81	6	68	46	3	1	48	1.28
31019533--31019601	36	1.9	35	85	2	93	60	4	4	30	1.35
31019525--31019609	36	2.3	36	76	9	91	61	3	5	29	1.36
31019573--31019621	22	2.2	22	81	0	62	63	2	8	26	1.34
31019838--31019877	3	13.3	3	100	0	80	32	0	0	67	0.91
31020545--31020599	30	1.9	29	85	10	78	49	12	14	23	1.78
31022885--31022909	2	12.5	2	100	0	50	52	0	0	48	1.00
31030543--31030664	61	2.0	61	100	0	244	54	21	13	11	1.70
31035387--31035642	126	2.0	125	85	3	345	30	14	20	34	1.93
31035608--31035669	27	2.3	27	91	8	99	27	8	14	50	1.71
31038642--31038736	23	4.1	23	93	5	165	31	0	20	48	1.50
31038640--31038766	24	5.2	24	85	11	170	29	0	23	47	1.52
31038681--31039058	29	12.1	29	73	19	300	26	0	30	42	1.60
31038703--31038835	66	2.0	66	92	2	223	26	0	31	42	1.56
31038681--31039056	95	3.9	95	81	10	407	26	0	30	42	1.60
31038793--31039056	66	4.0	66	94	2	426	26	0	32	40	1.61
31038703--31038997	161	1.8	163	93	1	513	25	0	32	41	1.61
31039125--31039294	25	6.8	25	100	0	340	40	11	0	47	1.40
31039361--31040071	365	2.0	364	89	0	1109	19	24	28	27	1.98
31040091--31040125	18	1.9	18	94	0	61	34	8	31	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31040762--31040786	7	3.6	7	100	0	50	60	12	0	28	1.32
31041532--31041558	11	2.5	11	100	0	54	51	0	0	48	1.00
31041595--31041645	22	2.3	22	96	0	93	39	0	31	29	1.57
31052043--31052092	22	2.2	24	79	10	61	46	0	4	50	1.20
31059424--31059469	17	2.7	18	80	10	60	39	2	0	58	1.10
31063890--31063923	16	2.1	16	100	0	68	20	32	11	35	1.89
31067198--31067241	22	2.0	22	100	0	88	18	9	18	54	1.69
31076209--31076241	17	1.9	17	93	0	57	75	6	9	9	1.18
31076227--31076561	159	2.1	159	89	3	507	57	8	6	27	1.53
31076763--31076821	16	3.6	16	71	15	50	20	8	5	66	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135